Inner membrane component of T3SS, cytoplasmic domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 17 - 186 | 1.8e-50 | TIR domain |
| TIR_2 | PF13676 | 19 - 143 | 5.6e-16 | TIR domain |
| NB-ARC | PF00931 | 195 - 367 | 6.1e-24 | NB-ARC domain |
| NACHT | PF05729 | 211 - 361 | 4e-07 | NACHT domain |
| WHD_ROQ1 | PF23282 | 437 - 504 | 9.7e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 721 - 806 | 2.4e-11 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 925 - 986 | 6.3e-08 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 795, 983, 1287, 1776 |
| Acc16I | TGCGCA | 1 cut(s) | 399 |
| AccB1I | GGYRCC | 1 cut(s) | 2725 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2084, 3266 |
| AccI | GTMKAC | 1 cut(s) | 3505 |
| AccIII | TCCGGA | 2 cut(s) | 461, 1396 |
| AciI | CCGC | 3 cut(s) | 85, 1952, 2981 |
| AcuI | CTGAAG | 5 cut(s) | 465, 1080, 2156, 2840, 3403 |
| AcyI | GRCGYC | 1 cut(s) | 3130 |
| AfaI | GTAC | 6 cut(s) | 115, 1650, 1669, 2017, 2975, 3277 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1348, 1403, 2084, 3266, 3434 |
| AflII | CTTAAG | 1 cut(s) | 2302 |
| AflIII | ACRYGT | 2 cut(s) | 1314, 1675 |
| AjiI | CACGTC | 1 cut(s) | 1021 |
| AjnI | CCWGG | 2 cut(s) | 618, 964 |
| AleI | CACNNNNGTG | 1 cut(s) | 2304 |
| Alw21I | GWGCWC | 4 cut(s) | 885, 1026, 1893, 3450 |
| Alw26I | GTCTC | 2 cut(s) | 2096, 3526 |
| Alw44I | GTGCAC | 1 cut(s) | 1022 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2281 |
| Ama87I | CYCGRG | 1 cut(s) | 3428 |
| Aor13HI | TCCGGA | 2 cut(s) | 461, 1396 |
| AoxI | GGCC | 3 cut(s) | 1156, 2308, 2839 |
| ApaLI | GTGCAC | 1 cut(s) | 1022 |
| ApeKI | GCWGC | 4 cut(s) | 1223, 2281, 2334, 3587 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2088, 2120 |
| AseI | ATTAAT | 1 cut(s) | 2418 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 577, 1088, 1373, 2169 |
| AspA2I | CCTAGG | 1 cut(s) | 2437 |
| AspLEI | GCGC | 1 cut(s) | 400 |
| AspS9I | GGNCC | 4 cut(s) | 962, 2001, 2581, 3437 |
| AsuC2I | CCSGG | 4 cut(s) | 1524, 2006, 3429, 3430 |
| AsuHPI | GGTGA | 4 cut(s) | 86, 88, 1369, 2066 |
| AsuII | TTCGAA | 2 cut(s) | 3309, 3412 |
| AvaI | CYCGRG | 1 cut(s) | 3428 |
| AvaII | GGWCC | 4 cut(s) | 962, 2001, 2581, 3437 |
| AvrII | CCTAGG | 1 cut(s) | 2437 |
| AxyI | CCTNAGG | 1 cut(s) | 1757 |
| BaeGI | GKGCMC | 1 cut(s) | 1026 |
| BanI | GGYRCC | 1 cut(s) | 2725 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2127, 2159 |
| BauI | CACGAG | 1 cut(s) | 1641 |
| BbsI | GAAGAC | 3 cut(s) | 2345, 2439, 3225 |
| Bbv12I | GWGCWC | 4 cut(s) | 885, 1026, 1893, 3450 |
| BbvCI | CCTCAGC | 1 cut(s) | 2577 |
| BbvI | GCAGC | 4 cut(s) | 1235, 2268, 2321, 3574 |
| BccI | CCATC | 8 cut(s) | 209, 459, 1876, 2162, 2255, 3189, 3260, 3277 |
| BceAI | ACGGC | 2 cut(s) | 2283, 3486 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1481, 1515 |
| BciT130I | CCWGG | 2 cut(s) | 620, 966 |
| BclI | TGATCA | 1 cut(s) | 3625 |
| BcnI | CCSGG | 4 cut(s) | 1524, 2006, 3429, 3430 |
| BcoDI | GTCTC | 2 cut(s) | 2096, 3526 |
| BfrI | CTTAAG | 1 cut(s) | 2302 |
| BglII | AGATCT | 2 cut(s) | 406, 1371 |
| BisI | GCNGC | 5 cut(s) | 1224, 2282, 2335, 2981, 3588 |
| BlnI | CCTAGG | 1 cut(s) | 2437 |
| BlsI | GCNGC | 5 cut(s) | 1225, 2283, 2336, 2982, 3589 |
| Bme1390I | CCNGG | 6 cut(s) | 620, 966, 1524, 2006, 3429, 3430 |
| Bme18I | GGWCC | 4 cut(s) | 962, 2001, 2581, 3437 |
| BmeT110I | CYCGRG | 1 cut(s) | 3428 |
| BmgBI | CACGTC | 1 cut(s) | 1021 |
| BmgT120I | GGNCC | 4 cut(s) | 962, 2001, 2581, 3437 |
| BmiI | GGNNCC | 3 cut(s) | 2003, 2583, 2727 |
| BmrFI | CCNGG | 6 cut(s) | 620, 966, 1524, 2006, 3429, 3430 |
| BmsI | GCATC | 9 cut(s) | 139, 1045, 1452, 1627, 1784, 1896, 1953, 2458, 2992 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2180 |
| BpiI | GAAGAC | 3 cut(s) | 2345, 2439, 3225 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1927, 1959 |
| BpmI | CTGGAG | 4 cut(s) | 146, 338, 393, 1597 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1165, 1694, 2577 |
| Bpu14I | TTCGAA | 2 cut(s) | 3309, 3412 |
| BpuEI | CTTGAG | 5 cut(s) | 308, 1886, 2051, 2332, 3463 |
| BpuMI | CCSGG | 4 cut(s) | 1524, 2006, 3429, 3430 |
| BsaAI | YACGTR | 1 cut(s) | 2977 |
| BsaBI | GATNNNNATC | 1 cut(s) | 19 |
| BsaHI | GRCGYC | 1 cut(s) | 3130 |
| BsaI | GGTCTC | 2 cut(s) | 2096, 3526 |
| BsaWI | WCCGGW | 4 cut(s) | 328, 461, 1396, 3535 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1348, 1403, 2084, 3266, 3434 |
| Bse1I | ACTGG | 5 cut(s) | 321, 376, 1152, 1380, 3212 |
| Bse21I | CCTNAGG | 1 cut(s) | 1757 |
| Bse3DI | GCAATG | 1 cut(s) | 1326 |
| Bse8I | GATNNNNATC | 1 cut(s) | 19 |
| BseAI | TCCGGA | 2 cut(s) | 461, 1396 |
| BseBI | CCWGG | 2 cut(s) | 620, 966 |
| BseJI | GATNNNNATC | 1 cut(s) | 19 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1348, 1403, 2084, 3266, 3434 |
| BseMI | GCAATG | 1 cut(s) | 1326 |
| BseMII | CTCAG | 8 cut(s) | 76, 504, 1082, 2568, 2604, 2938, 2975, 3523 |
| BseNI | ACTGG | 5 cut(s) | 321, 376, 1152, 1380, 3212 |
| BseRI | GAGGAG | 2 cut(s) | 1359, 3077 |
| BseSI | GKGCMC | 1 cut(s) | 1026 |
| BseXI | GCAGC | 4 cut(s) | 1235, 2268, 2321, 3574 |
| BseYI | CCCAGC | 1 cut(s) | 3576 |
| BshFI | GGCC | 3 cut(s) | 1158, 2310, 2841 |
| BshNI | GGYRCC | 1 cut(s) | 2725 |
| BsiHKAI | GWGCWC | 4 cut(s) | 885, 1026, 1893, 3450 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3428 |
| BsiSI | CCGG | 8 cut(s) | 329, 462, 1198, 1397, 1523, 2006, 3429, 3536 |
| BslFI | GGGAC | 1 cut(s) | 2278 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1348, 1403, 2084, 3266, 3434 |
| BsmAI | GTCTC | 2 cut(s) | 2096, 3526 |
| BsmFI | GGGAC | 1 cut(s) | 2278 |
| BsmI | GAATGC | 3 cut(s) | 439, 1561, 1732 |
| BsnI | GGCC | 3 cut(s) | 1158, 2310, 2841 |
| Bso31I | GGTCTC | 2 cut(s) | 2096, 3526 |
| BsoBI | CYCGRG | 1 cut(s) | 3428 |
| Bsp119I | TTCGAA | 2 cut(s) | 3309, 3412 |
| Bsp1286I | GDGCHC | 4 cut(s) | 885, 1026, 1893, 3450 |
| Bsp13I | TCCGGA | 2 cut(s) | 461, 1396 |
| BspACI | CCGC | 3 cut(s) | 85, 1952, 2981 |
| BspANI | GGCC | 3 cut(s) | 1158, 2310, 2841 |
| BspCNI | CTCAG | 8 cut(s) | 75, 505, 1081, 2569, 2603, 2937, 2976, 3522 |
| BspEI | TCCGGA | 2 cut(s) | 461, 1396 |
| BspHI | TCATGA | 1 cut(s) | 904 |
| BspLI | GGNNCC | 3 cut(s) | 2003, 2583, 2727 |
| BspT104I | TTCGAA | 2 cut(s) | 3309, 3412 |
| BspT107I | GGYRCC | 1 cut(s) | 2725 |
| BspTI | CTTAAG | 1 cut(s) | 2302 |
| BspTNI | GGTCTC | 2 cut(s) | 2096, 3526 |
| BsrDI | GCAATG | 1 cut(s) | 1326 |
| BsrI | ACTGG | 5 cut(s) | 321, 376, 1152, 1380, 3212 |
| BssNI | GRCGYC | 1 cut(s) | 3130 |
| BssSI | CACGAG | 1 cut(s) | 1641 |
| BssT1I | CCWWGG | 3 cut(s) | 703, 2437, 2718 |
| Bst2BI | CACGAG | 1 cut(s) | 1641 |
| Bst2UI | CCWGG | 2 cut(s) | 620, 966 |
| Bst4CI | ACNGT | 9 cut(s) | 113, 351, 1306, 1458, 1602, 2020, 2083, 2630, 3474 |
| Bst6I | CTCTTC | 2 cut(s) | 1707, 2175 |
| BstACI | GRCGYC | 1 cut(s) | 3130 |
| BstAFI | CTTAAG | 1 cut(s) | 2302 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 245 |
| BstBAI | YACGTR | 1 cut(s) | 2977 |
| BstBI | TTCGAA | 2 cut(s) | 3309, 3412 |
| BstC8I | GCNNGC | 6 cut(s) | 1700, 1704, 1893, 2574, 2767, 3499 |
| BstHHI | GCGC | 1 cut(s) | 400 |
| BstMAI | GTCTC | 2 cut(s) | 2096, 3526 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 245, 395, 731, 1229, 2929, 3053 |
| BstNI | CCWGG | 2 cut(s) | 620, 966 |
| BstNSI | RCATGY | 3 cut(s) | 1318, 1335, 1679 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2180 |
| BstSCI | CCNGG | 6 cut(s) | 618, 964, 1522, 2004, 3427, 3428 |
| BstSLI | GKGCMC | 1 cut(s) | 1026 |
| BstV1I | GCAGC | 4 cut(s) | 1235, 2268, 2321, 3574 |
| BstV2I | GAAGAC | 3 cut(s) | 2345, 2439, 3225 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2161 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1757 |
| BsuRI | GGCC | 3 cut(s) | 1158, 2310, 2841 |
| BtgZI | GCGATG | 1 cut(s) | 828 |
| BtrI | CACGTC | 1 cut(s) | 1021 |
| BtsIMutI | CAGTG | 2 cut(s) | 1159, 1311 |
| Cac8I | GCNNGC | 6 cut(s) | 1700, 1704, 1893, 2574, 2767, 3499 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2281 |
| CciI | TCATGA | 1 cut(s) | 904 |
| CfoI | GCGC | 1 cut(s) | 400 |
| Cfr13I | GGNCC | 4 cut(s) | 962, 2001, 2581, 3437 |
| Cfr9I | CCCGGG | 1 cut(s) | 3428 |
| CseI | GACGC | 3 cut(s) | 196, 2893, 3119 |
| Csp6I | GTAC | 6 cut(s) | 114, 1649, 1668, 2016, 2974, 3276 |
| CviQI | GTAC | 6 cut(s) | 114, 1649, 1668, 2016, 2974, 3276 |
| Eam1104I | CTCTTC | 2 cut(s) | 1707, 2175 |
| EarI | CTCTTC | 2 cut(s) | 1707, 2175 |
| Eco130I | CCWWGG | 3 cut(s) | 703, 2437, 2718 |
| Eco31I | GGTCTC | 2 cut(s) | 2096, 3526 |
| Eco32I | GATATC | 4 cut(s) | 2388, 2815, 3106, 3573 |
| Eco47I | GGWCC | 4 cut(s) | 962, 2001, 2581, 3437 |
| Eco57I | CTGAAG | 5 cut(s) | 465, 1080, 2156, 2840, 3403 |
| Eco81I | CCTNAGG | 1 cut(s) | 1757 |
| Eco88I | CYCGRG | 1 cut(s) | 3428 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2001, 2581 |
| EcoRI | GAATTC | 2 cut(s) | 577, 1858 |
| EcoRII | CCWGG | 2 cut(s) | 618, 964 |
| EcoRV | GATATC | 4 cut(s) | 2388, 2815, 3106, 3573 |
| EcoT14I | CCWWGG | 3 cut(s) | 703, 2437, 2718 |
| EcoT22I | ATGCAT | 2 cut(s) | 1467, 1799 |
| ErhI | CCWWGG | 3 cut(s) | 703, 2437, 2718 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 422, 454, 3375, 3407 |
| FaqI | GGGAC | 1 cut(s) | 2278 |
| FauI | CCCGC | 1 cut(s) | 92 |
| FauNDI | CATATG | 1 cut(s) | 425 |
| FbaI | TGATCA | 1 cut(s) | 3625 |
| FblI | GTMKAC | 1 cut(s) | 3505 |
| Fnu4HI | GCNGC | 5 cut(s) | 1224, 2282, 2335, 2981, 3588 |
| Fsp4HI | GCNGC | 5 cut(s) | 1224, 2282, 2335, 2981, 3588 |
| FspI | TGCGCA | 1 cut(s) | 399 |
| GlaI | GCGC | 1 cut(s) | 399 |
| GluI | GCNGC | 5 cut(s) | 1224, 2282, 2335, 2981, 3588 |
| GsaI | CCCAGC | 1 cut(s) | 3580 |
| GsuI | CTGGAG | 4 cut(s) | 146, 338, 393, 1597 |
| HaeIII | GGCC | 3 cut(s) | 1158, 2310, 2841 |
| HapII | CCGG | 8 cut(s) | 329, 462, 1198, 1397, 1523, 2006, 3429, 3536 |
| HgaI | GACGC | 3 cut(s) | 196, 2893, 3119 |
| HhaI | GCGC | 1 cut(s) | 400 |
| Hin1I | GRCGYC | 1 cut(s) | 3130 |
| Hin6I | GCGC | 1 cut(s) | 398 |
| HinP1I | GCGC | 1 cut(s) | 398 |
| HincII | GTYRAC | 6 cut(s) | 775, 835, 1302, 1414, 1783, 2610 |
| HindII | GTYRAC | 6 cut(s) | 775, 835, 1302, 1414, 1783, 2610 |
| HindIII | AAGCTT | 5 cut(s) | 387, 1062, 1696, 2027, 2359 |
| HpaII | CCGG | 8 cut(s) | 329, 462, 1198, 1397, 1523, 2006, 3429, 3536 |
| HphI | GGTGA | 4 cut(s) | 86, 88, 1369, 2066 |
| Hpy99I | CGWCG | 2 cut(s) | 190, 347 |
| HpyCH4III | ACNGT | 9 cut(s) | 113, 351, 1306, 1458, 1602, 2020, 2083, 2630, 3474 |
| HpyCH4IV | ACGT | 6 cut(s) | 342, 542, 1020, 1531, 2976, 3007 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 245, 395, 731, 1229, 2929, 3053 |
| HpySE526I | ACGT | 6 cut(s) | 342, 542, 1020, 1531, 2976, 3007 |
| Hsp92I | GRCGYC | 1 cut(s) | 3130 |
| HspAI | GCGC | 1 cut(s) | 398 |
| Kpn2I | TCCGGA | 2 cut(s) | 461, 1396 |
| Ksp22I | TGATCA | 1 cut(s) | 3625 |
| LmnI | GCTCC | 3 cut(s) | 1111, 2278, 2442 |
| Lsp1109I | GCAGC | 4 cut(s) | 1235, 2268, 2321, 3574 |
| LweI | GCATC | 9 cut(s) | 139, 1045, 1452, 1627, 1784, 1896, 1953, 2458, 2992 |
| MaeII | ACGT | 6 cut(s) | 342, 542, 1020, 1531, 2976, 3007 |
| MaeIII | GTNAC | 8 cut(s) | 180, 496, 1385, 1716, 2875, 3238, 3422, 3670 |
| MfeI | CAATTG | 1 cut(s) | 636 |
| MhlI | GDGCHC | 4 cut(s) | 885, 1026, 1893, 3450 |
| MlyI | GAGTC | 5 cut(s) | 130, 608, 858, 2144, 2995 |
| MmeI | TCCRAC | 5 cut(s) | 572, 1133, 2065, 2226, 3415 |
| Mph1103I | ATGCAT | 2 cut(s) | 1467, 1799 |
| MroI | TCCGGA | 2 cut(s) | 461, 1396 |
| MroXI | GAANNNNTTC | 4 cut(s) | 577, 1088, 1373, 2169 |
| MslI | CAYNNNNRTG | 5 cut(s) | 813, 1192, 1725, 2304, 2617 |
| MspA1I | CMGCKG | 3 cut(s) | 2576, 2983, 3640 |
| MspCI | CTTAAG | 1 cut(s) | 2302 |
| MspI | CCGG | 8 cut(s) | 329, 462, 1198, 1397, 1523, 2006, 3429, 3536 |
| MspR9I | CCNGG | 6 cut(s) | 620, 966, 1524, 2006, 3429, 3430 |
| MunI | CAATTG | 1 cut(s) | 636 |
| Mva1269I | GAATGC | 3 cut(s) | 439, 1561, 1732 |
| MvaI | CCWGG | 2 cut(s) | 620, 966 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 245, 395, 731, 1229, 2929, 3053 |
| NciI | CCSGG | 4 cut(s) | 1524, 2006, 3429, 3430 |
| NdeI | CATATG | 1 cut(s) | 425 |
| NlaIV | GGNNCC | 3 cut(s) | 2003, 2583, 2727 |
| NmuCI | GTSAC | 1 cut(s) | 1385 |
| NsbI | TGCGCA | 1 cut(s) | 399 |
| NsiI | ATGCAT | 2 cut(s) | 1467, 1799 |
| NspI | RCATGY | 3 cut(s) | 1318, 1335, 1679 |
| NspV | TTCGAA | 2 cut(s) | 3309, 3412 |
| OliI | CACNNNNGTG | 1 cut(s) | 2304 |
| PagI | TCATGA | 1 cut(s) | 904 |
| PciI | ACATGT | 2 cut(s) | 1314, 1675 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 351 |
| PctI | GAATGC | 3 cut(s) | 439, 1561, 1732 |
| PdmI | GAANNNNTTC | 4 cut(s) | 577, 1088, 1373, 2169 |
| PfeI | GAWTC | 8 cut(s) | 132, 488, 949, 1508, 2165, 3153, 3198, 3644 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2084, 3266 |
| PkrI | GCNGC | 5 cut(s) | 1225, 2283, 2336, 2982, 3589 |
| PleI | GAGTC | 5 cut(s) | 129, 607, 858, 2144, 2994 |
| PpsI | GAGTC | 5 cut(s) | 129, 607, 858, 2144, 2994 |
| Ppu21I | YACGTR | 1 cut(s) | 2977 |
| PpuMI | RGGWCCY | 2 cut(s) | 2001, 2581 |
| PscI | ACATGT | 2 cut(s) | 1314, 1675 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2180 |
| PshBI | ATTAAT | 1 cut(s) | 2418 |
| PsiI | TTATAA | 4 cut(s) | 795, 983, 1287, 1776 |
| Psp5II | RGGWCCY | 2 cut(s) | 2001, 2581 |
| Psp6I | CCWGG | 2 cut(s) | 618, 964 |
| PspFI | CCCAGC | 1 cut(s) | 3576 |
| PspGI | CCWGG | 2 cut(s) | 618, 964 |
| PspN4I | GGNNCC | 3 cut(s) | 2003, 2583, 2727 |
| PspPI | GGNCC | 4 cut(s) | 962, 2001, 2581, 3437 |
| PspPPI | RGGWCCY | 2 cut(s) | 2001, 2581 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2281 |
| PvuII | CAGCTG | 2 cut(s) | 2576, 3640 |
| RsaI | GTAC | 6 cut(s) | 115, 1650, 1669, 2017, 2975, 3277 |
| RsaNI | GTAC | 6 cut(s) | 114, 1649, 1668, 2016, 2974, 3276 |
| RseI | CAYNNNNRTG | 5 cut(s) | 813, 1192, 1725, 2304, 2617 |
| SatI | GCNGC | 5 cut(s) | 1224, 2282, 2335, 2981, 3588 |
| Sau96I | GGNCC | 4 cut(s) | 962, 2001, 2581, 3437 |
| SchI | GAGTC | 5 cut(s) | 130, 608, 858, 2144, 2995 |
| ScrFI | CCNGG | 6 cut(s) | 620, 966, 1524, 2006, 3429, 3430 |
| SduI | GDGCHC | 4 cut(s) | 885, 1026, 1893, 3450 |
| SfaNI | GCATC | 9 cut(s) | 139, 1045, 1452, 1627, 1784, 1896, 1953, 2458, 2992 |
| SfuI | TTCGAA | 2 cut(s) | 3309, 3412 |
| SinI | GGWCC | 4 cut(s) | 962, 2001, 2581, 3437 |
| SmaI | CCCGGG | 1 cut(s) | 3430 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 813, 1192, 1725, 2304, 2617 |
| SmlI | CTYRAG | 6 cut(s) | 287, 1901, 2030, 2302, 2347, 3478 |
| SmoI | CTYRAG | 6 cut(s) | 287, 1901, 2030, 2302, 2347, 3478 |
| SsiI | CCGC | 3 cut(s) | 85, 1952, 2981 |
| SspI | AATATT | 1 cut(s) | 848 |
| StyD4I | CCNGG | 6 cut(s) | 618, 964, 1522, 2004, 3427, 3428 |
| StyI | CCWWGG | 3 cut(s) | 703, 2437, 2718 |
| TaaI | ACNGT | 9 cut(s) | 113, 351, 1306, 1458, 1602, 2020, 2083, 2630, 3474 |
| TaiI | ACGT | 6 cut(s) | 345, 545, 1023, 1534, 2979, 3010 |
| TaqI | TCGA | 8 cut(s) | 345, 583, 1604, 2046, 3108, 3151, 3309, 3412 |
| TaqII | GACCGA | 1 cut(s) | 2949 |
| TatI | WGTACW | 2 cut(s) | 2015, 3275 |
| TauI | GCSGC | 1 cut(s) | 2983 |
| TfiI | GAWTC | 8 cut(s) | 132, 488, 949, 1508, 2165, 3153, 3198, 3644 |
| TscAI | CASTG | 2 cut(s) | 1159, 1311 |
| TseFI | GTSAC | 1 cut(s) | 1385 |
| TseI | GCWGC | 4 cut(s) | 1223, 2281, 2334, 3587 |
| Tsp45I | GTSAC | 1 cut(s) | 1385 |
| TspGWI | ACGGA | 3 cut(s) | 166, 857, 3542 |
| TspMI | CCCGGG | 1 cut(s) | 3428 |
| TspRI | CASTG | 2 cut(s) | 1159, 1311 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2084, 3266 |
| Vha464I | CTTAAG | 1 cut(s) | 2302 |
| VneI | GTGCAC | 1 cut(s) | 1022 |
| VpaK11BI | GGWCC | 4 cut(s) | 962, 2001, 2581, 3437 |
| VspI | ATTAAT | 1 cut(s) | 2418 |
| XbaI | TCTAGA | 3 cut(s) | 892, 2257, 3194 |
| XceI | RCATGY | 3 cut(s) | 1318, 1335, 1679 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1660 |
| XmaI | CCCGGG | 1 cut(s) | 3428 |
| XmaJI | CCTAGG | 1 cut(s) | 2437 |
| XmiI | GTMKAC | 1 cut(s) | 3505 |
| XmnI | GAANNNNTTC | 4 cut(s) | 577, 1088, 1373, 2169 |
| Zsp2I | ATGCAT | 2 cut(s) | 1467, 1799 |