RchiOBHm_Chr7g0229291

disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
52810561 .. 52813365
2805 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20540

Sequence Viewer

Length: 2805 bp
ATGGCTGAGGCACTCATCTCTGTGCTTCTGGAGCAATTGGCTTCAGTAGTATATCAACACACAAATGAAGTGGTGAAACTGGTTTTGAAGGCTGACAAAGATGTTAAAAGTTTCAGCAGCAAGCTCAAAGCCATTCATGGTGTGCTGGAGGATGCAGAGAAGAAACAAGTGACGGAGGCCAGGGTCAGAGACTGGTTGCAGAAGCTCAAAGATGTATCGTACGAGATGGACGACGTCCTAGACGAGTGGAACACTGAAATTTTGAAACAACAAGTGGAGGAAGGCAAGAAGAAGGTATGTTTCCCCACTCCTGCCAATTGCTGTTGTTTTGGCCAAGTCAATAAGGCAATTCATCATCATAACATTGCTAGAAGGATAAAGAAACTGAACGAGAAACTAACTGTGATTGCTGCTGAAAGAGAAATGTATGGCTTTCATCAATCCACAATAGGTGGCCATGATGATCAACAGCTTATTCATCGACGGAAGACTTCATCTTTGGTCGATATATCTATGATATTTGGCCGAGAAGAAGAAAAAGAGATGTTGTTGAGCAAGTTGTTGAGGGGGAGTAACGAAGATGGGGGGAGGTTCCTTGTCATCCCTATTGTAGGGATGGGAGGGATGGGGAAAACAACTCTTGCCCAATTAGCCTATAACAATGAAAAGGTTACTGCCCATTTTCACAAGAAAGTATGGGTTTGTGTCTCAGACCCTTTTGATGAGATCAAGATTGCTAAAGCGATCACTGAAAGTCTCTTAGGAACCCCAAGCAGTTCAAATGAGTTGGAAATTTTATTGCAGTGTATCAAGACTCATATTGAGAATAAAAAGTTACTCCTTGTTCTAGATGATGTGTGGACCGAAGACGAAACAAAGTGGGAAAATTTGAAACTACCAATAATAATGCGAAGTTGTGAAGAAGGAAGTTCAATATTGGTTACCACGCGAAAACAAGGGGTTGCTAAAATGATGAGAGCAACCAACAACATGATCTATTTAGATGAGTTGAATGATAAGGATTGTTTGGCTTTGTTCAATAGCATCGCGTTTTTGGATAGGGAAGAAGATGAGGCTGATGAGTTTGGAGCTATTGGTAAGGAAATTGTGAAACGGTGTAAAGGTTTGCCTCTTGCTGCAAAGACTTTGGGCAGTCTACTGTGGTATAAGAAAACAAGAAAGGAATGGTGGGATGTTCTGAATAGTAAGATATGGGAATTAGAAGAAGTTGAGGAACAAGTTTTCCGACCACTGTTACTTAGTTATTATGATTTGGCTCCTGCAATCAAAAGATGTCTTCTGTATTGTGCAATATTTCCCAAAGATTATGACCTCAAAAAAGATAATTTAATTGAGCTTTGGATGTCACAAGATTATCTTAATTCAAAGGAAAAAAAAGAAAAGAAAAGAATAGGTCAATATTATTTTGAAAATCTATCAATGCGGTCTTTTTTTCAAGATTTTAGAAAAGATGAGATGGGAAATGTTTATGGGTGCAAAATACATGATATTGTGCATGACTTTGTGATGTTTCTTACCAAAAAAGAATGCACTATTATAGATGCAGATGCAGCTGAGGGAGCTAATAAAAAAATAGAGCCATCAGGTGATAAGGTTCGTCATTTGACCTTAATAAATGTACCCGAAGGTCCACTTTCATTTCCTACTTCATGTTACGGATGCAAAAATATGCGAACTCTCACACTCCTTGATTCAAGCATTACAACCATAAGCTCTGGTTCAATTATGCAAATGAAATGCCTCAGGACATTGAATTTGAGTGGTAACATGCTCGATGAAGTTCCAAAAAAGATTGGTGAATTGATTCATTTGAGATATATGGATTTGTCTCGTAGTCGTAATTTGAAAGAATTATCGGAAGCTGTGTGTGATTTATACAATCTACAAACCCTGGTCCTTGTTCACTGCTATGAACTTGAGAAACTGCCCAAGGCAATGGGAAAGTTGATTAACTTGAAGCATCTATATGTTGATGGTTGTCATATGCTGGAGTACTTACCGAAAGGGATTGGGAGTTTGAAAAGTCTGCAAGTATTGGACTGCTTTCATGTATGTGAGGGTGATGATGAAGCATTGAAATTTGGAGATCTCGGAATCATGGACCAGCTTCAGGGGAGCCTTAAGATAGGATGGTTGGGGAAAGTTGATGCGAGTGAGATTGAGAAAGCACAGTTGGGGAATAAGGAGCACCTCTCTCATTTGAAAGTAGATTTCCTCGGAGGTCGAGAGCAGAGAAAAGGTGATTCAGAAATAGTGAAAGCATTGCAACCACATCAAAATTTGGAATCTTTATCCATTTTGTGGTGCCATGGCACCACCGAGTCTCTCTATTGGATCAAGTCTTTACGCAATTTGAGAAAACTTTATCTCGATGGGTGGAGATTTTGTGAGTTTTTGCCTCCTCTTGGAAAATTGCCGTCGCTTGAAATTCTGACAATAATGGATATGTGGAATGTGAAAAAGGTGGGAGTTGAATTTGTGGGAATAGAAGAAGAACAAGTCCCTGGAACTCTATTTCCCAAATTGAAACGACTTTGTTTCTGGAACATGCCCAACTGGGAAGAGTGGGCCTTTCTTTCTGAAATCACAATAATGCCACGCCTTTCTGAGTTGCGAATTGAGTGGTGCCCAAAGCTAAAAGCACTGCCAAACTTCCTCTACAAGATTAAAGCACTGCGTACTTTGGAGATCGTGGGTTGTTCGATTCTGGAAGGAGAATACGAAAAAGGCGTGGGGAAGGAGTGGCACAACATTTCTCACATCCCAAACGTTACAGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

934

Amino Acids

107.12

Weight (kDa)

6.53

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 98 2.3e-22 Rx N-terminal domain
NB-ARC PF00931 177 - 352 3.1e-33 NB-ARC domain
WHD_DRP PF23559 438 - 509 5.7e-23 Disease resistance protein Winged helix domain
LRR_8 PF13855 556 - 598 4.8e-06 Leucine rich repeat
LRR_14 PF23598 564 - 910 6.3e-34 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 703 - 823 2.1e-23 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 237
AccB1I GGYRCC 3 cut(s) 2325, 2333, 2646
AccB7I CCANNNNNTGG 1 cut(s) 2322
AccI GTMKAC 1 cut(s) 1156
AccII CGCG 2 cut(s) 949, 1049
AciI CCGC 1 cut(s) 1444
AclI AACGTT 1 cut(s) 2790
AclWI GGATC 1 cut(s) 2363
AcoI YGGCCR 3 cut(s) 331, 454, 523
AcsI RAATTY 8 cut(s) 258, 792, 886, 1774, 2099, 2299, 2448, 2495
AcuI CTGAAG 2 cut(s) 27, 2114
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 4 cut(s) 221, 1641, 2015, 2701
AfiI CCNNNNNNNGG 4 cut(s) 611, 2131, 2322, 2426
AflII CTTAAG 1 cut(s) 2141
AjnI CCWGG 3 cut(s) 179, 1911, 2524
AjuI GAANNNNNNNTTGG 2 cut(s) 2177, 2209
AloI GAACNNNNNNTCC 4 cut(s) 1227, 1259, 2521, 2553
Alw21I GWGCWC 1 cut(s) 2211
Alw26I GTCTC 5 cut(s) 183, 712, 761, 1854, 2349
AlwI GGATC 1 cut(s) 2363
AlwNI CAGNNNCTG 1 cut(s) 192
AoxI GGCC 5 cut(s) 177, 331, 454, 523, 2589
ApeKI GCWGC 4 cut(s) 117, 410, 1136, 1571
ApoI RAATTY 8 cut(s) 258, 792, 886, 1774, 2099, 2299, 2448, 2495
ArsI GACNNNNNNTTYG 4 cut(s) 481, 513, 1759, 1791
Asp700I GAANNNNTTC 1 cut(s) 1824
AspS9I GGNCC 5 cut(s) 861, 1649, 1915, 2122, 2589
AsuHPI GGTGA 5 cut(s) 85, 1619, 1829, 2093, 2273
AvaII GGWCC 4 cut(s) 861, 1649, 1915, 2122
AxyI CCTNAGG 1 cut(s) 1763
BaeGI GKGCMC 1 cut(s) 2651
BalI TGGCCA 2 cut(s) 333, 456
BanI GGYRCC 3 cut(s) 2325, 2333, 2646
BbsI GAAGAC 3 cut(s) 494, 873, 1289
Bbv12I GWGCWC 1 cut(s) 2211
BbvCI CCTCAGC 2 cut(s) 6, 1575
BbvI GCAGC 4 cut(s) 129, 397, 1123, 1583
BccI CCATC 9 cut(s) 220, 575, 610, 619, 1471, 1609, 1988, 2145, 2387
BceAI ACGGC 1 cut(s) 2422
BciT130I CCWGG 3 cut(s) 181, 1913, 2526
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 5 cut(s) 183, 712, 761, 1854, 2349
BfaI CTAG 3 cut(s) 239, 369, 848
BfrI CTTAAG 1 cut(s) 2141
BglII AGATCT 1 cut(s) 2107
BisI GCNGC 4 cut(s) 118, 411, 1137, 1572
BlsI GCNGC 4 cut(s) 119, 412, 1138, 1573
BmcAI AGTACT 1 cut(s) 2015
Bme1390I CCNGG 3 cut(s) 181, 1913, 2526
Bme18I GGWCC 4 cut(s) 861, 1649, 1915, 2122
BmgT120I GGNCC 5 cut(s) 861, 1649, 1915, 2122, 2589
BmiI GGNNCC 7 cut(s) 593, 766, 1278, 2138, 2327, 2335, 2648
BmrFI CCNGG 3 cut(s) 181, 1913, 2526
BmrI ACTGGG 1 cut(s) 2587
BmsI GCATC 7 cut(s) 142, 1053, 1552, 1558, 1670, 1990, 2158
BmuI ACTGGG 1 cut(s) 2587
BpiI GAAGAC 3 cut(s) 494, 873, 1289
BplI GAGNNNNNCTC 2 cut(s) 2198, 2230
BpmI CTGGAG 3 cut(s) 50, 167, 2030
Bpu10I CCTNAGC 2 cut(s) 6, 1575
BpuEI CTTGAG 1 cut(s) 1958
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 6 cut(s) 180, 1911, 1950, 2236, 2329, 2524
BsaXI ACNNNNNCTCC 2 cut(s) 2392, 2422
Bsc4I CCNNNNNNNGG 4 cut(s) 611, 2131, 2322, 2426
Bse1I ACTGG 3 cut(s) 84, 197, 2582
Bse21I CCTNAGG 1 cut(s) 1763
Bse3DI GCAATG 3 cut(s) 363, 1962, 2282
BseBI CCWGG 3 cut(s) 181, 1913, 2526
BseDI CCNNGG 6 cut(s) 180, 1911, 1950, 2236, 2329, 2524
BseGI GGATG 9 cut(s) 157, 600, 621, 630, 1198, 1368, 1685, 2156, 2781
BseLI CCNNNNNNNGG 4 cut(s) 611, 2131, 2322, 2426
BseMI GCAATG 3 cut(s) 363, 1962, 2282
BseMII CTCAG 4 cut(s) 723, 1566, 1777, 2619
BseNI ACTGG 3 cut(s) 84, 197, 2582
BseRI GAGGAG 1 cut(s) 2412
BseSI GKGCMC 1 cut(s) 2651
BseXI GCAGC 4 cut(s) 129, 397, 1123, 1583
Bsh1236I CGCG 2 cut(s) 949, 1049
BshFI GGCC 5 cut(s) 179, 333, 456, 525, 2591
BshNI GGYRCC 3 cut(s) 2325, 2333, 2646
BsiHKAI GWGCWC 1 cut(s) 2211
BsiWI CGTACG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 2507
BslI CCNNNNNNNGG 4 cut(s) 611, 2131, 2322, 2426
BsmAI GTCTC 5 cut(s) 183, 712, 761, 1854, 2349
BsmFI GGGAC 1 cut(s) 2507
BsmI GAATGC 1 cut(s) 1553
BsnI GGCC 5 cut(s) 179, 333, 456, 525, 2591
Bsp1286I GDGCHC 2 cut(s) 2211, 2651
Bsp143I GATC 7 cut(s) 463, 726, 744, 993, 2107, 2355, 2709
Bsp19I CCATGG 1 cut(s) 2329
BspACI CCGC 1 cut(s) 1444
BspANI GGCC 5 cut(s) 179, 333, 456, 525, 2591
BspCNI CTCAG 4 cut(s) 722, 1567, 1776, 2620
BspFNI CGCG 2 cut(s) 949, 1049
BspLI GGNNCC 7 cut(s) 593, 766, 1278, 2138, 2327, 2335, 2648
BspPI GGATC 1 cut(s) 2363
BspT107I GGYRCC 3 cut(s) 2325, 2333, 2646
BspTI CTTAAG 1 cut(s) 2141
BsrDI GCAATG 3 cut(s) 363, 1962, 2282
BsrI ACTGG 3 cut(s) 84, 197, 2582
BssECI CCNNGG 6 cut(s) 180, 1911, 1950, 2236, 2329, 2524
BssMI GATC 7 cut(s) 463, 726, 744, 993, 2107, 2355, 2709
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 2 cut(s) 1950, 2329
Bst2UI CCWGG 3 cut(s) 181, 1913, 2526
Bst4CI ACNGT 6 cut(s) 403, 1116, 1161, 1254, 2193, 2797
Bst6I CTCTTC 1 cut(s) 2577
BstACI GRCGYC 1 cut(s) 234
BstAFI CTTAAG 1 cut(s) 2141
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 7 cut(s) 6, 709, 760, 1259, 1575, 1763, 2628
BstDSI CCRYGG 1 cut(s) 2329
BstEII GGTNACC 1 cut(s) 940
BstENI CCTNNNNNAGG 1 cut(s) 609
BstF5I GGATG 9 cut(s) 157, 600, 621, 630, 1198, 1368, 1685, 2156, 2781
BstFNI CGCG 2 cut(s) 949, 1049
BstKTI GATC 7 cut(s) 466, 729, 747, 996, 2110, 2358, 2712
BstMAI GTCTC 5 cut(s) 183, 712, 761, 1854, 2349
BstMBI GATC 7 cut(s) 463, 726, 744, 993, 2107, 2355, 2709
BstMWI GCNNNNNNNGC 4 cut(s) 31, 650, 1571, 1580
BstNI CCWGG 3 cut(s) 181, 1913, 2526
BstNSI RCATGY 2 cut(s) 1792, 2572
BstPI GGTNACC 1 cut(s) 940
BstSCI CCNGG 3 cut(s) 179, 1911, 2524
BstSLI GKGCMC 1 cut(s) 2651
BstUI CGCG 2 cut(s) 949, 1049
BstV1I GCAGC 4 cut(s) 129, 397, 1123, 1583
BstV2I GAAGAC 3 cut(s) 494, 873, 1289
BstX2I RGATCY 1 cut(s) 2107
BstXI CCANNNNNNTGG 1 cut(s) 1957
BstYI RGATCY 1 cut(s) 2107
Bsu36I CCTNAGG 1 cut(s) 1763
BsuRI GGCC 5 cut(s) 179, 333, 456, 525, 2591
BtgI CCRYGG 1 cut(s) 2329
BtgZI GCGATG 1 cut(s) 1030
BtsCI GGATG 9 cut(s) 157, 600, 621, 630, 1198, 1368, 1685, 2156, 2781
BtsI GCAGTG 4 cut(s) 809, 1924, 2663, 2693
BtsIMutI CAGTG 7 cut(s) 252, 747, 809, 1250, 1924, 2663, 2693
Cac8I GCNNGC 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 192
Cfr13I GGNCC 5 cut(s) 861, 1649, 1915, 2122, 2589
Csp6I GTAC 4 cut(s) 220, 1640, 2014, 2700
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviQI GTAC 4 cut(s) 220, 1640, 2014, 2700
DdeI CTNAG 7 cut(s) 6, 709, 760, 1259, 1575, 1763, 2628
DpnI GATC 7 cut(s) 465, 728, 746, 995, 2109, 2357, 2711
DpnII GATC 7 cut(s) 463, 726, 744, 993, 2107, 2355, 2709
EaeI YGGCCR 3 cut(s) 331, 454, 523
Eam1104I CTCTTC 1 cut(s) 2577
EarI CTCTTC 1 cut(s) 2577
Eco130I CCWWGG 2 cut(s) 1950, 2329
Eco47I GGWCC 4 cut(s) 861, 1649, 1915, 2122
Eco57I CTGAAG 2 cut(s) 27, 2114
Eco81I CCTNAGG 1 cut(s) 1763
Eco91I GGTNACC 1 cut(s) 940
EcoNI CCTNNNNNAGG 1 cut(s) 609
EcoO65I GGTNACC 1 cut(s) 940
EcoRII CCWGG 3 cut(s) 179, 1911, 2524
EcoT14I CCWWGG 2 cut(s) 1950, 2329
ErhI CCWWGG 2 cut(s) 1950, 2329
FalI AAGNNNNNCTT 4 cut(s) 1362, 1394, 1638, 1670
FaqI GGGAC 1 cut(s) 2507
FauNDI CATATG 1 cut(s) 2004
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 1156
Fnu4HI GCNGC 4 cut(s) 118, 411, 1137, 1572
FokI GGATG 9 cut(s) 164, 587, 628, 637, 1205, 1375, 1692, 2163, 2768
Fsp4HI GCNGC 4 cut(s) 118, 411, 1137, 1572
FspBI CTAG 3 cut(s) 239, 369, 848
GluI GCNGC 4 cut(s) 118, 411, 1137, 1572
GsuI CTGGAG 3 cut(s) 50, 167, 2030
HaeIII GGCC 5 cut(s) 179, 333, 456, 525, 2591
Hin1I GRCGYC 1 cut(s) 234
HinfI GANTC 8 cut(s) 814, 1712, 1825, 2115, 2264, 2306, 2342, 2725
HphI GGTGA 5 cut(s) 85, 1619, 1829, 2093, 2273
Hpy166II GTNNAC 4 cut(s) 861, 1157, 1652, 1924
Hpy8I GTNNAC 4 cut(s) 861, 1157, 1652, 1924
Hpy99I CGWCG 3 cut(s) 236, 486, 2443
HpyAV CCTTC 8 cut(s) 82, 275, 286, 366, 917, 1640, 2726, 2752
HpyCH4III ACNGT 6 cut(s) 403, 1116, 1161, 1254, 2193, 2797
HpyCH4IV ACGT 2 cut(s) 234, 2790
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 650, 1571, 1580
HpyF3I CTNAG 7 cut(s) 6, 709, 760, 1259, 1575, 1763, 2628
HpySE526I ACGT 2 cut(s) 234, 2790
Hsp92I GRCGYC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 7 cut(s) 463, 726, 744, 993, 2107, 2355, 2709
LmnI GCTCC 6 cut(s) 31, 1088, 1282, 1580, 2136, 2206
Lsp1109I GCAGC 4 cut(s) 129, 397, 1123, 1583
LweI GCATC 7 cut(s) 142, 1053, 1552, 1558, 1670, 1990, 2158
MaeI CTAG 3 cut(s) 239, 369, 848
MaeII ACGT 2 cut(s) 234, 2790
MalI GATC 7 cut(s) 465, 728, 746, 995, 2109, 2357, 2711
MboI GATC 7 cut(s) 463, 726, 744, 993, 2107, 2355, 2709
MfeI CAATTG 2 cut(s) 35, 316
MflI RGATCY 1 cut(s) 2107
MhlI GDGCHC 2 cut(s) 2211, 2651
MlsI TGGCCA 2 cut(s) 333, 456
MluNI TGGCCA 2 cut(s) 333, 456
MlyI GAGTC 2 cut(s) 808, 2351
MmeI TCCRAC 2 cut(s) 768, 1270
Mox20I TGGCCA 2 cut(s) 333, 456
MroXI GAANNNNTTC 1 cut(s) 1824
MscI TGGCCA 2 cut(s) 333, 456
MseI TTAA 7 cut(s) 105, 1349, 1380, 1631, 1971, 2142, 2688
MslI CAYNNNNRTG 6 cut(s) 20, 63, 1929, 1986, 2073, 2612
Msp20I TGGCCA 2 cut(s) 333, 456
MspA1I CMGCKG 1 cut(s) 1574
MspCI CTTAAG 1 cut(s) 2141
MspR9I CCNGG 3 cut(s) 181, 1913, 2526
MunI CAATTG 2 cut(s) 35, 316
Mva1269I GAATGC 1 cut(s) 1553
MvaI CCWGG 3 cut(s) 181, 1913, 2526
MvnI CGCG 2 cut(s) 949, 1049
MwoI GCNNNNNNNGC 4 cut(s) 31, 650, 1571, 1580
NcoI CCATGG 1 cut(s) 2329
NdeI CATATG 1 cut(s) 2004
NdeII GATC 7 cut(s) 463, 726, 744, 993, 2107, 2355, 2709
NlaIV GGNNCC 7 cut(s) 593, 766, 1278, 2138, 2327, 2335, 2648
NmeAIII GCCGAG 1 cut(s) 551
NmuCI GTSAC 2 cut(s) 169, 1365
NspI RCATGY 2 cut(s) 1792, 2572
PcsI WCGNNNNNNNCGW 3 cut(s) 228, 240, 2748
PctI GAATGC 1 cut(s) 1553
PdmI GAANNNNTTC 1 cut(s) 1824
PfeI GAWTC 6 cut(s) 1712, 1825, 2115, 2264, 2306, 2725
Pfl23II CGTACG 1 cut(s) 219
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 2322
PkrI GCNGC 4 cut(s) 119, 412, 1138, 1573
PleI GAGTC 2 cut(s) 808, 2350
PpsI GAGTC 2 cut(s) 808, 2350
Psp1406I AACGTT 1 cut(s) 2790
Psp6I CCWGG 3 cut(s) 179, 1911, 2524
PspEI GGTNACC 1 cut(s) 940
PspGI CCWGG 3 cut(s) 179, 1911, 2524
PspLI CGTACG 1 cut(s) 219
PspN4I GGNNCC 7 cut(s) 593, 766, 1278, 2138, 2327, 2335, 2648
PspPI GGNCC 5 cut(s) 861, 1649, 1915, 2122, 2589
PstNI CAGNNNCTG 1 cut(s) 192
PsuI RGATCY 1 cut(s) 2107
PsyI GACNNNGTC 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 1574
RsaI GTAC 4 cut(s) 221, 1641, 2015, 2701
RsaNI GTAC 4 cut(s) 220, 1640, 2014, 2700
RseI CAYNNNNRTG 6 cut(s) 20, 63, 1929, 1986, 2073, 2612
SaqAI TTAA 7 cut(s) 105, 1349, 1380, 1631, 1971, 2142, 2688
SatI GCNGC 4 cut(s) 118, 411, 1137, 1572
Sau3AI GATC 7 cut(s) 463, 726, 744, 993, 2107, 2355, 2709
Sau96I GGNCC 5 cut(s) 861, 1649, 1915, 2122, 2589
ScaI AGTACT 1 cut(s) 2015
SchI GAGTC 2 cut(s) 808, 2351
ScrFI CCNGG 3 cut(s) 181, 1913, 2526
SduI GDGCHC 2 cut(s) 2211, 2651
SfaNI GCATC 7 cut(s) 142, 1053, 1552, 1558, 1670, 1990, 2158
SinI GGWCC 4 cut(s) 861, 1649, 1915, 2122
SmiMI CAYNNNNRTG 6 cut(s) 20, 63, 1929, 1986, 2073, 2612
SmlI CTYRAG 2 cut(s) 1937, 2141
SmoI CTYRAG 2 cut(s) 1937, 2141
SsiI CCGC 1 cut(s) 1444
SspI AATATT 3 cut(s) 936, 1314, 1421
SspMI CTAG 3 cut(s) 239, 369, 848
StyD4I CCNGG 3 cut(s) 179, 1911, 2524
StyI CCWWGG 2 cut(s) 1950, 2329
TaaI ACNGT 6 cut(s) 403, 1116, 1161, 1254, 2193, 2797
TaiI ACGT 2 cut(s) 237, 2793
TaqI TCGA 7 cut(s) 481, 504, 1794, 2245, 2391, 2723, 2800
TaqII GACCGA 1 cut(s) 878
TatI WGTACW 1 cut(s) 2013
TfiI GAWTC 6 cut(s) 1712, 1825, 2115, 2264, 2306, 2725
Tru1I TTAA 7 cut(s) 105, 1349, 1380, 1631, 1971, 2142, 2688
Tru9I TTAA 7 cut(s) 105, 1349, 1380, 1631, 1971, 2142, 2688
TscAI CASTG 7 cut(s) 259, 754, 809, 1257, 1931, 2670, 2700
TseFI GTSAC 2 cut(s) 169, 1365
TseI GCWGC 4 cut(s) 117, 410, 1136, 1571
Tsp45I GTSAC 2 cut(s) 169, 1365
TspGWI ACGGA 3 cut(s) 188, 499, 1692
TspRI CASTG 7 cut(s) 259, 754, 809, 1257, 1931, 2670, 2700
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 2322
Vha464I CTTAAG 1 cut(s) 2141
VpaK11BI GGWCC 4 cut(s) 861, 1649, 1915, 2122
XagI CCTNNNNNAGG 1 cut(s) 609
XapI RAATTY 8 cut(s) 258, 792, 886, 1774, 2099, 2299, 2448, 2495
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 2 cut(s) 1792, 2572
XmiI GTMKAC 1 cut(s) 1156
XmnI GAANNNNTTC 1 cut(s) 1824
XspI CTAG 3 cut(s) 239, 369, 848
ZraI GACGTC 1 cut(s) 235
ZrmI AGTACT 1 cut(s) 2015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.