MD15G1035200.v1.1

disease resistance protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
2482735 .. 2493328
10594 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1035200.v1.1.491

Sequence Viewer

Length: 2553 bp
ATGGCAGACGGGATCATTTTCATGCTACTGGATCGGCTGGCTTCAACAGCTTATGAATATGTGGACGGTGAGGTGAAACATGTTTTGGACGCCAAGAAAGATATTGAAGAATTTGCTGACAATCTCAAGGCTATTCAAGTTGTACTCGAAGATGCGGAGCAAAGGCAAGTGAAGGAGGCCAGCGTTGAGAAGCAAGAACGAGAAAGTGAAAATGCTCTTGTTCTTAACAATAAGAAGAAGAAGAAGGTAACTCTCTCTGTTTCCCCTAGCTGCTTTTGTTTTGGCAAAGTCAGACGGGTAATTTTCCGTCGTGACATTGCGCGTAAGATAAAAGATCTGAATGGTAGACTAAGTGCGATTGATGAGCAGAGAAAAAGGTATGAGTTTCAACACATAGAAAGAGGCATTCAACAATTACCTGAACGGCAGAAGACTTCGTCCTTCGTCGTCATTTCAGAGGTATTTGGTCGAGGAAAAGAAAAAGACATTTTGATAACAAAATTGTTGGGTGATGGTGGAAAAGATCGGATGGGGCTCCTTATCATCCCTATTCTAGGAATGGGCGGAATGGGAGAGACAACTCTAGCCCAACTAGTTTATAATGATAGCAAGGTTAAATCCCATTTTGAAAAGAGAGTGTGGGTTTGTGTCTCAGACCCTTTTGATGAGATTAAGATTGCCAAATCCATAAGTGGTGATGGTGCCCCAAGTTCAAATGAGTTGGACTATGTCTTGCAGTGCATGTCAAGATCTATCGAGGGCAAAAGGTTTCTCCTTGTCCTAGATGATGTGTGGAACCACGATAGTGAAAAGTGGGAACGATTAAGGGCACCACTAATACAAAGTGGTGCTCATGGCAGTAGAATATTGGTGACCACAAGAAAGCATGAGGTTGTTGATATGATGAGAGCAACAAGTGACATGATTAGTTTGGGAGAGTTGAGTGAAGGATATTGTTTATCAATCTTCAATCACATGGCGTTTGCTGATAGAGAAGTAGGTGAGTCTAAAGCGTTTGAAGATATTAGTAAGAAAATTGTAGAAAAATGTAAGGGTTTGCTTCTTGCCGCAAAAGCTTTAGGCAGTCTCATGCACAATAAGAGAACAAGGAGGGAATGGCTAGATGTTTTGAATAGCAAGATATGGGATCGAGAAGAGGTGGAGCAAAAAGTTTTCCAACCGTTATTACTAAGTTATTATGATTTGGCCCCATCAATCAAATGTTGCCTTTTGTATTGTGCTAGTTTTCCTAAAGATTTTGAGTTTGAGAGAAAATATTTTATTAATCTTTGGATGGCACAAGATTATCTTAATTCAAAAGGGAATAAAGATGAGGGAGAAATTGGTGAAGCATTTTTTGATAACTTAGTTGCACGATCTTTTTTCCAAGATTTGGTGAAAGATAGTGTTAGTGGTAAAGTTATAGGTTGCAAAATGCATGATATTGTTCATGACTTTGTGCAATCTCTCAACAACAACGAATGTTTGATCATGGATGCTGAGGGTGTTGGCAATGAAGTAGAGGTTTTGGGTGAAAAGGTTCGTCATTTGACCTTAAGGTTGAAATGTGGTGAGCCACTCCCACCTTCTAATGCATGTTACAATTGCAAAAATTTACGTACACTCACAAGAATCTCAAACTCGATGTATGGTTCAACCATTTCTACGATAGAATCAAATTTCATTTTGCAACTAAAATGTCTTAGGACATTAAATTTGCGTAAAAATGGCATAATTGAAGTCCCAAAGGAAATTGGTGAATTGATACATTTGAGGCATATTGATTTGTCAAGGAATGAAGGTTTGAAGATATTGCCGGACAGTATATGTGAGATGTACAATTTGTATACCTTGCGCCTATATTATTGCAGGTCACTTGAAAAACTACCAGATAACATGGGAAAGTTGATTAGCTTAAAGCACCTTTATGTTTTTGGCTGCGATATGCTGGAGTACTTGCCAAAAGGGATTCGGAGACTACAAAAATTGAGAACAATTGAAGTGTGTGTTGTGGTTTGTGATGAAGATGAGGACAAAGAAGCATTACAACTGGGAGATCTGAGGGGCTTGAACCTTGATGGCCGTCTCAACATAATATTAAAGGGGAATGTGAAAGATGAGAGTGAGCTTGAGAAAGCACAATTGTGGCGCATGAAGCAACTCTTTCCTCTCGGAATTAATTCTTACTATGTCCAATACATGCAGACATCAAGCACCGTTGAAATACTGAATGTCTTACGACCGCACGAAAATCTGGAATCTTTAAGCATTCGTGTGCACTCAGGCGCCACCTGCCCTAATTGGATGATGTCTTTGCACAACTTAAAAATCATCTTTCTATCTGGATGGAGTGAATGCAAGTTTTTGCCTCCTCTTGGGAAATTGCCATACCTTGCAAAACTGACCATAGTGCTAATGATGAAGGTGAAAAAGGTTGGTGGTGAATTTTTGGGAGTAGACCAAGATGAAACGTCAATGAAATCATCATCATACTCATTTTTCCCAAAGTTGAAAGAACTCGAAATTGCCTACATGGAAGCGTTGGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

851

Amino Acids

97.15

Weight (kDa)

6.99

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 15 - 64 4.7e-06 Rx N-terminal domain
NB-ARC PF00931 162 - 330 6.2e-29 NB-ARC domain
WHD_DRP PF23559 416 - 487 5e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 562 - 843 2.4e-18 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 684 - 804 5.4e-22 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
AarI CACCTGC 1 cut(s) 2300
Acc36I ACCTGC 2 cut(s) 1860, 2300
AccB1I GGYRCC 3 cut(s) 701, 829, 2285
AccB7I CCANNNNNTGG 1 cut(s) 1393
AccI GTMKAC 3 cut(s) 346, 1847, 2457
AccII CGCG 1 cut(s) 322
AciI CCGC 4 cut(s) 155, 564, 1068, 2243
AclWI GGATC 3 cut(s) 20, 39, 1155
AcoI YGGCCR 1 cut(s) 2080
AcsI RAATTY 5 cut(s) 110, 1612, 1678, 1714, 2444
AcyI GRCGYC 2 cut(s) 90, 2286
AfaI GTAC 4 cut(s) 144, 1621, 1838, 1955
AfiI CCNNNNNNNGG 3 cut(s) 554, 1393, 2375
AflII CTTAAG 1 cut(s) 1555
AflIII ACRYGT 1 cut(s) 79
AhlI ACTAGT 1 cut(s) 592
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AleI CACNNNNGTG 2 cut(s) 804, 2143
AluBI AGCT 5 cut(s) 50, 270, 1076, 1914, 2128
AluI AGCT 5 cut(s) 50, 270, 1076, 1914, 2128
Alw21I GWGCWC 2 cut(s) 853, 2280
Alw26I GTCTC 5 cut(s) 569, 655, 1091, 1969, 2090
Alw44I GTGCAC 1 cut(s) 2276
AlwI GGATC 3 cut(s) 20, 39, 1155
AoxI GGCC 3 cut(s) 177, 1206, 2080
ApaLI GTGCAC 1 cut(s) 2276
ApeKI GCWGC 2 cut(s) 270, 1938
ApoI RAATTY 5 cut(s) 110, 1612, 1678, 1714, 2444
ArsI GACNNNNNNTTYG 2 cut(s) 1699, 1731
AseI ATTAAT 2 cut(s) 1284, 2178
Asp700I GAANNNNTTC 2 cut(s) 1539, 2179
AspLEI GCGC 4 cut(s) 322, 1857, 2151, 2288
AspS9I GGNCC 1 cut(s) 1207
BaeGI GKGCMC 3 cut(s) 706, 832, 2280
BanI GGYRCC 3 cut(s) 701, 829, 2285
BanII GRGCYC 1 cut(s) 537
BbsI GAAGAC 1 cut(s) 437
Bbv12I GWGCWC 2 cut(s) 853, 2280
BbvCI CCTCAGC 1 cut(s) 1500
BbvI GCAGC 2 cut(s) 257, 1925
BccI CCATC 7 cut(s) 506, 523, 692, 1219, 1288, 2072, 2340
BceAI ACGGC 2 cut(s) 440, 2067
BclI TGATCA 1 cut(s) 1488
BcoDI GTCTC 5 cut(s) 569, 655, 1091, 1969, 2090
BcuI ACTAGT 1 cut(s) 592
BfaI CTAG 7 cut(s) 267, 554, 584, 593, 782, 1121, 1242
BfoI RGCGCY 1 cut(s) 2289
BfrI CTTAAG 1 cut(s) 1555
BfuAI ACCTGC 2 cut(s) 1860, 2300
BglII AGATCT 3 cut(s) 334, 749, 2056
BisI GCNGC 3 cut(s) 271, 1068, 1939
BlsI GCNGC 3 cut(s) 272, 1069, 1940
BmcAI AGTACT 1 cut(s) 1955
BmgT120I GGNCC 1 cut(s) 1207
BmiI GGNNCC 6 cut(s) 536, 703, 797, 831, 1209, 2287
BmrI ACTGGG 1 cut(s) 2060
BmsI GCATC 2 cut(s) 142, 1486
BmuI ACTGGG 1 cut(s) 2060
BpiI GAAGAC 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 1970
Bpu10I CCTNAGC 1 cut(s) 1500
BpuEI CTTGAG 2 cut(s) 110, 2150
BsaAI YACGTR 1 cut(s) 1619
BsaHI GRCGYC 2 cut(s) 90, 2286
Bsc4I CCNNNNNNNGG 3 cut(s) 554, 1393, 2375
Bse1I ACTGG 2 cut(s) 33, 2055
Bse3DI GCAATG 2 cut(s) 315, 1519
BseGI GGATG 6 cut(s) 534, 543, 1299, 1501, 2310, 2351
BseLI CCNNNNNNNGG 3 cut(s) 554, 1393, 2375
BseMI GCAATG 2 cut(s) 315, 1519
BseMII CTCAG 4 cut(s) 666, 1491, 2051, 2295
BseNI ACTGG 2 cut(s) 33, 2055
BseRI GAGGAG 1 cut(s) 2361
BseSI GKGCMC 3 cut(s) 706, 832, 2280
BseXI GCAGC 2 cut(s) 257, 1925
Bsh1236I CGCG 1 cut(s) 322
Bsh1285I CGRYCG 1 cut(s) 2243
BshFI GGCC 3 cut(s) 179, 1208, 2082
BshNI GGYRCC 3 cut(s) 701, 829, 2285
BsiEI CGRYCG 1 cut(s) 2243
BsiHKAI GWGCWC 2 cut(s) 853, 2280
BsiSI CCGG 1 cut(s) 1817
BslFI GGGAC 1 cut(s) 1727
BslI CCNNNNNNNGG 3 cut(s) 554, 1393, 2375
BsmAI GTCTC 5 cut(s) 569, 655, 1091, 1969, 2090
BsmBI CGTCTC 1 cut(s) 2090
BsmFI GGGAC 1 cut(s) 1727
BsmI GAATGC 3 cut(s) 405, 2268, 2360
BsnI GGCC 3 cut(s) 179, 1208, 2082
Bsp1286I GDGCHC 5 cut(s) 537, 706, 832, 853, 2280
Bsp1407I TGTACA 1 cut(s) 1836
Bsp143I GATC 9 cut(s) 12, 31, 334, 523, 749, 1147, 1376, 1488, 2056
BspACI CCGC 4 cut(s) 155, 564, 1068, 2243
BspANI GGCC 3 cut(s) 179, 1208, 2082
BspCNI CTCAG 4 cut(s) 665, 1492, 2052, 2294
BspFNI CGCG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 1450
BspLI GGNNCC 6 cut(s) 536, 703, 797, 831, 1209, 2287
BspMI ACCTGC 2 cut(s) 1860, 2300
BspPI GGATC 3 cut(s) 20, 39, 1155
BspT107I GGYRCC 3 cut(s) 701, 829, 2285
BspTI CTTAAG 1 cut(s) 1555
BsrDI GCAATG 2 cut(s) 315, 1519
BsrGI TGTACA 1 cut(s) 1836
BsrI ACTGG 2 cut(s) 33, 2055
BssMI GATC 9 cut(s) 12, 31, 334, 523, 749, 1147, 1376, 1488, 2056
BssNAI GTATAC 1 cut(s) 1848
BssNI GRCGYC 2 cut(s) 90, 2286
Bst1107I GTATAC 1 cut(s) 1848
Bst4CI ACNGT 4 cut(s) 68, 1182, 1823, 2218
Bst6I CTCTTC 2 cut(s) 1149, 2541
BstACI GRCGYC 2 cut(s) 90, 2286
BstAFI CTTAAG 1 cut(s) 1555
BstAUI TGTACA 1 cut(s) 1836
BstBAI YACGTR 1 cut(s) 1619
BstC8I GCNNGC 2 cut(s) 39, 181
BstDEI CTNAG 8 cut(s) 350, 652, 1190, 1366, 1500, 1703, 2060, 2281
BstEII GGTNACC 1 cut(s) 871
BstENI CCTNNNNNAGG 1 cut(s) 552
BstF5I GGATG 6 cut(s) 534, 543, 1299, 1501, 2310, 2351
BstFNI CGCG 1 cut(s) 322
BstH2I RGCGCY 1 cut(s) 2289
BstHHI GCGC 4 cut(s) 322, 1857, 2151, 2288
BstKTI GATC 9 cut(s) 15, 34, 337, 526, 752, 1150, 1379, 1491, 2059
BstMAI GTCTC 5 cut(s) 569, 655, 1091, 1969, 2090
BstMBI GATC 9 cut(s) 12, 31, 334, 523, 749, 1147, 1376, 1488, 2056
BstMCI CGRYCG 1 cut(s) 2243
BstMWI GCNNNNNNNGC 4 cut(s) 47, 1073, 2155, 2292
BstNSI RCATGY 4 cut(s) 83, 745, 1599, 2203
BstPI GGTNACC 1 cut(s) 871
BstSLI GKGCMC 3 cut(s) 706, 832, 2280
BstSNI TACGTA 1 cut(s) 1619
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 257, 1925
BstV2I GAAGAC 1 cut(s) 437
BstX2I RGATCY 3 cut(s) 334, 749, 2056
BstYI RGATCY 3 cut(s) 334, 749, 2056
BstZ17I GTATAC 1 cut(s) 1848
BsuRI GGCC 3 cut(s) 179, 1208, 2082
BtsCI GGATG 6 cut(s) 534, 543, 1299, 1501, 2310, 2351
BtsI GCAGTG 1 cut(s) 743
BtsIMutI CAGTG 1 cut(s) 743
BveI ACCTGC 2 cut(s) 1860, 2300
Cac8I GCNNGC 2 cut(s) 39, 181
CciI TCATGA 1 cut(s) 1450
CfoI GCGC 4 cut(s) 322, 1857, 2151, 2288
Cfr13I GGNCC 1 cut(s) 1207
CseI GACGC 1 cut(s) 98
Csp6I GTAC 4 cut(s) 143, 1620, 1837, 1954
CviQI GTAC 4 cut(s) 143, 1620, 1837, 1954
DdeI CTNAG 8 cut(s) 350, 652, 1190, 1366, 1500, 1703, 2060, 2281
DinI GGCGCC 1 cut(s) 2287
DpnI GATC 9 cut(s) 14, 33, 336, 525, 751, 1149, 1378, 1490, 2058
DpnII GATC 9 cut(s) 12, 31, 334, 523, 749, 1147, 1376, 1488, 2056
EaeI YGGCCR 1 cut(s) 2080
Eam1104I CTCTTC 2 cut(s) 1149, 2541
EarI CTCTTC 2 cut(s) 1149, 2541
EciI GGCGGA 1 cut(s) 579
Eco105I TACGTA 1 cut(s) 1619
Eco24I GRGCYC 1 cut(s) 537
Eco91I GGTNACC 1 cut(s) 871
EcoNI CCTNNNNNAGG 1 cut(s) 552
EcoO65I GGTNACC 1 cut(s) 871
EcoT22I ATGCAT 2 cut(s) 1440, 1597
EcoT38I GRGCYC 1 cut(s) 537
EgeI GGCGCC 1 cut(s) 2287
EheI GGCGCC 1 cut(s) 2287
Esp3I CGTCTC 1 cut(s) 2090
FalI AAGNNNNNCTT 4 cut(s) 1293, 1325, 2147, 2179
FaqI GGGAC 1 cut(s) 1727
FbaI TGATCA 1 cut(s) 1488
FblI GTMKAC 3 cut(s) 346, 1847, 2457
Fnu4HI GCNGC 3 cut(s) 271, 1068, 1939
FokI GGATG 6 cut(s) 530, 541, 1306, 1508, 2317, 2358
FriOI GRGCYC 1 cut(s) 537
Fsp4HI GCNGC 3 cut(s) 271, 1068, 1939
FspBI CTAG 7 cut(s) 267, 554, 584, 593, 782, 1121, 1242
GlaI GCGC 4 cut(s) 321, 1856, 2150, 2287
GluI GCNGC 3 cut(s) 271, 1068, 1939
GsuI CTGGAG 1 cut(s) 1970
HaeII RGCGCY 1 cut(s) 2289
HaeIII GGCC 3 cut(s) 179, 1208, 2082
HapII CCGG 1 cut(s) 1817
HgaI GACGC 1 cut(s) 98
HhaI GCGC 4 cut(s) 322, 1857, 2151, 2288
Hin1I GRCGYC 2 cut(s) 90, 2286
Hin6I GCGC 4 cut(s) 320, 1855, 2149, 2286
HinP1I GCGC 4 cut(s) 320, 1855, 2149, 2286
HindIII AAGCTT 1 cut(s) 1074
HinfI GANTC 5 cut(s) 1004, 1632, 1673, 1969, 2258
HpaII CCGG 1 cut(s) 1817
Hpy166II GTNNAC 6 cut(s) 64, 347, 1622, 1848, 2278, 2458
Hpy188I TCNGA 8 cut(s) 293, 339, 457, 528, 655, 1974, 2061, 2174
Hpy188III TCNNGA 6 cut(s) 311, 747, 1151, 1451, 2255, 2343
Hpy8I GTNNAC 6 cut(s) 64, 347, 1622, 1848, 2278, 2458
Hpy99I CGWCG 2 cut(s) 312, 449
HpyAV CCTTC 7 cut(s) 166, 238, 451, 941, 1596, 1793, 2416
HpyCH4III ACNGT 4 cut(s) 68, 1182, 1823, 2218
HpyCH4IV ACGT 2 cut(s) 1618, 2471
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 1073, 2155, 2292
HpyF3I CTNAG 8 cut(s) 350, 652, 1190, 1366, 1500, 1703, 2060, 2281
HpySE526I ACGT 2 cut(s) 1618, 2471
Hsp92I GRCGYC 2 cut(s) 90, 2286
HspAI GCGC 4 cut(s) 320, 1855, 2149, 2286
KasI GGCGCC 1 cut(s) 2285
Ksp22I TGATCA 1 cut(s) 1488
Kzo9I GATC 9 cut(s) 12, 31, 334, 523, 749, 1147, 1376, 1488, 2056
LmnI GCTCC 3 cut(s) 157, 540, 1162
Lsp1109I GCAGC 2 cut(s) 257, 1925
LweI GCATC 2 cut(s) 142, 1486
MaeI CTAG 7 cut(s) 267, 554, 584, 593, 782, 1121, 1242
MaeII ACGT 2 cut(s) 1618, 2471
MaeIII GTNAC 6 cut(s) 247, 311, 871, 917, 1598, 1872
MalI GATC 9 cut(s) 14, 33, 336, 525, 751, 1149, 1378, 1490, 2058
MboI GATC 9 cut(s) 12, 31, 334, 523, 749, 1147, 1376, 1488, 2056
MfeI CAATTG 3 cut(s) 1603, 1995, 2141
MflI RGATCY 3 cut(s) 334, 749, 2056
MhlI GDGCHC 5 cut(s) 537, 706, 832, 853, 2280
Mly113I GGCGCC 1 cut(s) 2286
MlyI GAGTC 1 cut(s) 1013
MmeI TCCRAC 3 cut(s) 702, 1201, 2523
Mph1103I ATGCAT 2 cut(s) 1440, 1597
MroXI GAANNNNTTC 2 cut(s) 1539, 2179
MslI CAYNNNNRTG 5 cut(s) 20, 804, 1926, 2143, 2273
MspCI CTTAAG 1 cut(s) 1555
MspI CCGG 1 cut(s) 1817
MunI CAATTG 3 cut(s) 1603, 1995, 2141
Mva1269I GAATGC 3 cut(s) 405, 2268, 2360
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 4 cut(s) 47, 1073, 2155, 2292
NarI GGCGCC 1 cut(s) 2286
NdeII GATC 9 cut(s) 12, 31, 334, 523, 749, 1147, 1376, 1488, 2056
NlaIV GGNNCC 6 cut(s) 536, 703, 797, 831, 1209, 2287
NmuCI GTSAC 4 cut(s) 311, 871, 917, 1872
NsiI ATGCAT 2 cut(s) 1440, 1597
NspI RCATGY 4 cut(s) 83, 745, 1599, 2203
OliI CACNNNNGTG 2 cut(s) 804, 2143
PagI TCATGA 1 cut(s) 1450
PaqCI CACCTGC 1 cut(s) 2300
PciI ACATGT 1 cut(s) 79
PctI GAATGC 3 cut(s) 405, 2268, 2360
PdmI GAANNNNTTC 2 cut(s) 1539, 2179
PfeI GAWTC 4 cut(s) 1632, 1673, 1969, 2258
PflFI GACNNNGTC 2 cut(s) 436, 728
PflMI CCANNNNNTGG 1 cut(s) 1393
PkrI GCNGC 3 cut(s) 272, 1069, 1940
PleI GAGTC 1 cut(s) 1012
PluTI GGCGCC 1 cut(s) 2289
PpsI GAGTC 1 cut(s) 1012
Ppu21I YACGTR 1 cut(s) 1619
PscI ACATGT 1 cut(s) 79
PshBI ATTAAT 2 cut(s) 1284, 2178
PsiI TTATAA 1 cut(s) 600
PspEI GGTNACC 1 cut(s) 871
PspN4I GGNNCC 6 cut(s) 536, 703, 797, 831, 1209, 2287
PspPI GGNCC 1 cut(s) 1207
PsuI RGATCY 3 cut(s) 334, 749, 2056
PsyI GACNNNGTC 2 cut(s) 436, 728
RsaI GTAC 4 cut(s) 144, 1621, 1838, 1955
RsaNI GTAC 4 cut(s) 143, 1620, 1837, 1954
RseI CAYNNNNRTG 5 cut(s) 20, 804, 1926, 2143, 2273
SatI GCNGC 3 cut(s) 271, 1068, 1939
Sau3AI GATC 9 cut(s) 12, 31, 334, 523, 749, 1147, 1376, 1488, 2056
Sau96I GGNCC 1 cut(s) 1207
ScaI AGTACT 1 cut(s) 1955
SchI GAGTC 1 cut(s) 1013
SduI GDGCHC 5 cut(s) 537, 706, 832, 853, 2280
SfaNI GCATC 2 cut(s) 142, 1486
SfoI GGCGCC 1 cut(s) 2287
SmiMI CAYNNNNRTG 5 cut(s) 20, 804, 1926, 2143, 2273
SmlI CTYRAG 3 cut(s) 125, 1555, 2129
SmoI CTYRAG 3 cut(s) 125, 1555, 2129
SnaBI TACGTA 1 cut(s) 1619
SpeI ACTAGT 1 cut(s) 592
SsiI CCGC 4 cut(s) 155, 564, 1068, 2243
SspDI GGCGCC 1 cut(s) 2285
SspI AATATT 3 cut(s) 867, 1277, 2097
SspMI CTAG 7 cut(s) 267, 554, 584, 593, 782, 1121, 1242
TaaI ACNGT 4 cut(s) 68, 1182, 1823, 2218
TaiI ACGT 2 cut(s) 1621, 2474
TaqI TCGA 6 cut(s) 147, 469, 756, 1150, 1643, 2520
TatI WGTACW 3 cut(s) 142, 1836, 1953
TauI GCSGC 1 cut(s) 1070
TfiI GAWTC 4 cut(s) 1632, 1673, 1969, 2258
TscAI CASTG 1 cut(s) 743
TseFI GTSAC 4 cut(s) 311, 871, 917, 1872
TseI GCWGC 2 cut(s) 270, 1938
Tsp45I GTSAC 4 cut(s) 311, 871, 917, 1872
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 743
Tth111I GACNNNGTC 2 cut(s) 436, 728
Van91I CCANNNNNTGG 1 cut(s) 1393
Vha464I CTTAAG 1 cut(s) 1555
VneI GTGCAC 1 cut(s) 2276
VspI ATTAAT 2 cut(s) 1284, 2178
XagI CCTNNNNNAGG 1 cut(s) 552
XapI RAATTY 5 cut(s) 110, 1612, 1678, 1714, 2444
XceI RCATGY 4 cut(s) 83, 745, 1599, 2203
XmiI GTMKAC 3 cut(s) 346, 1847, 2457
XmnI GAANNNNTTC 2 cut(s) 1539, 2179
XspI CTAG 7 cut(s) 267, 554, 584, 593, 782, 1121, 1242
ZrmI AGTACT 1 cut(s) 1955
Zsp2I ATGCAT 2 cut(s) 1440, 1597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.