Rw2G030480

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000018
Physical Location & Seq
Reverse (-)
49844524 .. 49847886
3363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G030480.1

Sequence Viewer

Length: 3363 bp
ATGGCTGAAGCACTCATTTCCGTTCTCCTAGAACAATTGGCTTCAATCACCATTCAACAGGTACAACAACAAGTGAAATTGGTAGTTGATGTTAAGAAAGAAGTTGCAAAGCTCACCCACAATTTCCAAGCTATAGAAGCCGTGCTCAAAGATGCAGAGGAGAGGCAAGTGAAGGAGGCTACCGTTAAGCTATGGCTGGATGATTTAAAGGACGTGTCCAACGAGATGGAGGACGTGTTGGATGATTGGAACACTGAAATTCTGAGGGTACAAATTGAGAAACAAGAGAAAGAAGCTGGAAATGCTCTTGATACGACTAAGAAGAAGGTATGTCTATGCATCCCTACTGCTTCCTTTTGTTATGGCCAAGTTGGTCGAGTTATTTTTCGTCACGACATTGCTAAAAAGATTAAAGATCTCAATGAAAAGTTAGCAACAATTGCTAAGAGGAGGCAAGATTTTAACTTTCAGTACACGAAAAGTGCTACTGAACATATTGAGCGACAAAAGACTACTTCTTTTGTTGATCAAACATTTGGTCGGGTAGATGAAAAGGAATTATTGGTGCGCAAGTTGTTGAGTGAGAGTAATCCTAAAGGGCAGAGTCCCCTTGTCATCCCTATTGTAGGGATGGGCGGAATTGGTAAAACAACCCTTTCCCAACTGGCATATAATGATAAAAGAGTCCAGGAAAATTTCAAAGATAGAATATGGGTTTGTGTCTCAGACCCATTTGATGAGCTCAACATAGCCAAAACCATCCTTGCACGCCTCGGTGGAAATGTCAATTCCATTTCGAGTGACCTAGACGCTTTCTTCGAATGTCTGCAGAAGTCTATTGAGGGGAAAAAGTTTCTCCTCGTCTTAGATGATGTGTGGAACCAAGACTATATGAAGTGGGCAAACTTGAAGCTACATTTACAGAAAGGTGCTGTAGGTAGTAAAATAATTGTCACTACACGAAAAGAAGAAGTAGCTAGGATGATGGGAGCACCCGATAACACTATCAATTTGAAGGTGTTGAGTGATGAAACTTGTTGGTCATTGTTCGCTGGAATTGCCTTTGCCAATAGTAACCAAGATGAGTGTCGAAATTTAGAACCTATTGGTAGGAAAATTGTAAACAAGTGCAAAGGGTTGCCTCTTATTGCTAAGACTTTAGGTGGCCTCATGCTTTGTAAGAAAACAAAGAGAGAATGGCAAGATGTTTTGAGTAGTAAGATATGGGAGTTAGACATAGTGGAGCAACAAGTTTTCCAACCGCTATTACTAAGTTTTTATGATTTAACTCCAATGATCAAGCGTTGTCTCTTATATTGTGTTATTTTTCCAAAGGACCGTATAATTAACAAAGAAGTTTTGATTAAGTTGTGGATGTCGCAAGGTTTTCTTGGTTCAGTTGGGAACAAAGAAAAGACAATGATAGACATTGGAGAATCATATTTCAATAACTTAGTAATGCGATATTTCTTCCAGAATTTCAAGAAAGATGAATTTGGAGATATTGAACAGTGCCAAATGCATGATATTGTGCATGACTTTCTCCAATTTTTAACCAAGAATGAATACTTAATTGTGGAGGTCGAAGGTGGTGAGGTGAGAGTAGAATTGCCCAATAAGCTCCGTCATTTGACCATAATGTTTGCACCCTTTGGACCTATTCCCCTTTCTTTTGACCACTGCCAACGTCTGCGGACCATTACAACATTTAATTGTAGAATTGCAGGTCTCAGCCGAGAGTGGATTTTACAATTAAAATGCGTGAGGACGTTGAATTTGAGTGACAACTTAATCAGAGAAGTTCCGGACGAGGTTGGCGTGTTGGTGCACTTGAGGTATTTGGATTTATCCGAAAACGAGAGGCTGCAGAAATTACCTGATAGTTTGGGTAATTTAGTCAATTTGCAAACCTTGCGAGTTGGTTTTACTGATGTTGAAAAGTTACCCGAGGCCATGGGAAAGATGATCAGCTTGCAGCATCTTGATGCTAAGAATTGTAAGAGGCTGAAGAAATTACCTGATAGTTTGTGTAATTTAGTCAATTTGCAAACCTTGCTACTTGATGGGTGCCGTAGCCTTGAAAAGTTACCCGAGGCCATGGGAAAGTTGATCAGCCTGCAGCATCTTGATGCTAAGAATTGTGAGAGGCTGGAGAAATTACCTGATAGTTTGTGTAATTTAGTCAATTTGCAAACCTTGCTACTTGATGGGTGCCGCAGCCTTGAAAAGTTACCCGAGGCCATGGGAAAGTTGATCAGCCTGCAGCATCTTGATGCTAAGAATTGTGAGAGGCTGGAGAAATTACCTGATAGTTTGTGTAATTTAGTCAATTTGCAAACCTTGCGAGTTGATGAGTGCCTTGGCCTTGAACAGTTACCCGAGGCCATGGGAAAGTTGACCAGCTTGCAGCATCTTCATGCTGCTTATTGTGTTTGCGGGCTGAGGTTGCCCAAATCAATTGCGAGGTTGAAAAGTCTACGGACGCTAGATCTGCCTGTTGTAATTGAAGGTAGTGGAGATGAAGAAGGATTGAGGTTAAGTGATTTGAGAGACATGGACGAGCTTCAGGGGAAGCTTTGGATCAGATTGGAGGGGAAATTGAAAGATAGTGCTGCGAGTGATGCGGAGAAAGCCAAATTGGTGAACAAGAAACACCTTCTTCATTTGAAACTAGAGTTCTACAGGGGGGAGAGGGACCAGAGTAGCATCCAGGAAGCAGTATTGAATGCCTTACAGCCAAATTCAAATCTTGAATCCTTACAGATCCTTGGTAACCGTGGCAGCAACCTGTGCCCCAATTGGACCTCCTCCTTAATTAACTTGAAAAGCCTGACCTTCTCTGGGTACCATAAGTATGTGCCTCTTTCGGTTTTGGGCTACTTGGGGTCCCTTGAGACACTCAGATTTGAATACATGTTTGGAGTGAAAAAGGTTGGATTTGAGTACTCACTTGATCATCAAGTTATATTGTTCCCCAATCTGAAACAACTCAAGTTCTGGGAAATGCGGGAGTGGGAAGAATGGGATCATCATGATGAGAATGATGCTACTTCATCGTCACCAACTTGTTTCATGCCACGCCTTTCTACTTTATCCATCTCCTACTGCAAGAAGCTGAAGACGCTGCCAGACTTCCTTCGGAAGAAGACGCCGCTGCTTCAGAATCTGATCATCGACAATTGTGCCATTCTCTCCCTAAGTTGCAAAGACAGGCAAGGCCCGGAGTGGTCCAAGATTTCTCACATCCCAAACATCGAAATTGATTGGAAAACTGTACAAAAAGATGGAGTTTGGATCGAACAAGAGGAAGCAATTGATGAAGAAACTGATGTAGAAATTGATGAAGAAAGTGATCCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1120

Amino Acids

127.9

Weight (kDa)

6.12

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 95 1.6e-20 Rx N-terminal domain
NB-ARC PF00931 186 - 358 3.4e-37 NB-ARC domain
WHD_DRP PF23559 442 - 514 2.4e-24 Disease resistance protein Winged helix domain
LRR_14 PF23598 564 - 686 7.9e-17 Leucine-rich repeat region
LRR_8 PF13855 564 - 619 4.5e-06 Leucine rich repeat
LRR_8 PF13855 588 - 641 2.7e-07 Leucine rich repeat
LRR_14 PF23598 675 - 762 5.6e-11 Leucine-rich repeat region
LRR_14 PF23598 764 - 1038 2.3e-19 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 846 - 972 1.2e-23 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 569
Acc36I ACCTGC 1 cut(s) 1715
Acc65I GGTACC 1 cut(s) 2844
AccB1I GGYRCC 3 cut(s) 2067, 2211, 2844
AccI GTMKAC 1 cut(s) 2476
AccIII TCCGGA 1 cut(s) 1804
AciI CCGC 8 cut(s) 636, 1262, 1693, 2215, 2436, 2624, 3007, 3152
AclWI GGATC 5 cut(s) 2588, 2758, 3033, 3302, 3347
AcoI YGGCCR 1 cut(s) 364
AcsI RAATTY 7 cut(s) 258, 694, 1093, 1477, 1493, 1774, 2740
AcuI CTGAAG 5 cut(s) 27, 2027, 2549, 3137, 3143
AcyI GRCGYC 1 cut(s) 3149
AfaI GTAC 6 cut(s) 63, 270, 473, 2846, 2945, 3276
AfiI CCNNNNNNNGG 2 cut(s) 626, 2841
AflIII ACRYGT 3 cut(s) 213, 234, 2913
AjiI CACGTC 2 cut(s) 214, 235
AjnI CCWGG 2 cut(s) 687, 2709
AjuI GAANNNNNNNTTGG 4 cut(s) 2621, 2653, 2901, 2933
Alw21I GWGCWC 4 cut(s) 147, 744, 994, 1830
Alw26I GTCTC 5 cut(s) 727, 1313, 1733, 2544, 2888
Alw44I GTGCAC 1 cut(s) 1826
AlwI GGATC 5 cut(s) 2588, 2758, 3033, 3302, 3347
AlwNI CAGNNNCTG 1 cut(s) 3166
Ama87I CYCGRG 4 cut(s) 1946, 2090, 2234, 2378
Aor13HI TCCGGA 1 cut(s) 1804
AoxI GGCC 8 cut(s) 364, 1165, 1950, 2094, 2238, 2362, 2382, 3217
ApaLI GTGCAC 1 cut(s) 1826
ApoI RAATTY 7 cut(s) 258, 694, 1093, 1477, 1493, 1774, 2740
ArsI GACNNNNNNTTYG 6 cut(s) 523, 555, 800, 832, 1759, 1791
Asp718I GGTACC 1 cut(s) 2844
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 8 cut(s) 1336, 1655, 1695, 2695, 2802, 2886, 3218, 3228
AsuC2I CCSGG 1 cut(s) 3221
AsuHPI GGTGA 6 cut(s) 40, 106, 1604, 1609, 2653, 3051
AsuII TTCGAA 1 cut(s) 819
AvaI CYCGRG 4 cut(s) 1946, 2090, 2234, 2378
AvaII GGWCC 7 cut(s) 1336, 1655, 1695, 2695, 2802, 2886, 3228
BaeGI GKGCMC 2 cut(s) 1830, 2795
BalI TGGCCA 1 cut(s) 366
BanI GGYRCC 3 cut(s) 2067, 2211, 2844
BanII GRGCYC 1 cut(s) 744
BbsI GAAGAC 2 cut(s) 3125, 3152
Bbv12I GWGCWC 4 cut(s) 147, 744, 994, 1830
BbvCI CCTCAGC 1 cut(s) 2441
BccI CCATC 8 cut(s) 220, 625, 767, 979, 2057, 2201, 3104, 3278
BceAI ACGGC 2 cut(s) 125, 2055
BcgI CGANNNNNNTGC 2 cut(s) 3164, 3198
BciT130I CCWGG 2 cut(s) 689, 2711
BclI TGATCA 7 cut(s) 526, 1296, 1965, 2109, 2253, 2953, 3168
BcnI CCSGG 1 cut(s) 3221
BcoDI GTCTC 5 cut(s) 727, 1313, 1733, 2544, 2888
BfaI CTAG 5 cut(s) 29, 806, 978, 2486, 2672
BfmI CTRYAG 7 cut(s) 132, 827, 933, 1865, 2117, 2261, 2680
BfuAI ACCTGC 1 cut(s) 1715
BglII AGATCT 2 cut(s) 415, 2488
BmcAI AGTACT 1 cut(s) 2945
Bme1390I CCNGG 3 cut(s) 689, 2711, 3221
Bme18I GGWCC 7 cut(s) 1336, 1655, 1695, 2695, 2802, 2886, 3228
BmeT110I CYCGRG 4 cut(s) 1946, 2090, 2234, 2378
BmgBI CACGTC 2 cut(s) 214, 235
BmgT120I GGNCC 8 cut(s) 1336, 1655, 1695, 2695, 2802, 2886, 3218, 3228
BmiI GGNNCC 7 cut(s) 881, 2069, 2213, 2696, 2846, 2887, 2888
BmrFI CCNGG 3 cut(s) 689, 2711, 3221
BpiI GAAGAC 2 cut(s) 3125, 3152
BpmI CTGGAG 2 cut(s) 2171, 2315
Bpu10I CCTNAGC 1 cut(s) 2441
Bpu14I TTCGAA 1 cut(s) 819
BpuEI CTTGAG 3 cut(s) 1852, 2912, 2975
BpuMI CCSGG 1 cut(s) 3221
BsaHI GRCGYC 1 cut(s) 3149
BsaI GGTCTC 1 cut(s) 1733
BsaWI WCCGGW 1 cut(s) 1804
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 626, 2841
Bse1I ACTGG 1 cut(s) 669
Bse3DI GCAATG 1 cut(s) 396
BseAI TCCGGA 1 cut(s) 1804
BseBI CCWGG 2 cut(s) 689, 2711
BseLI CCNNNNNNNGG 2 cut(s) 626, 2841
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 5 cut(s) 254, 738, 1744, 2432, 2914
BseNI ACTGG 1 cut(s) 669
BseRI GAGGAG 4 cut(s) 173, 463, 848, 2797
BseSI GKGCMC 2 cut(s) 1830, 2795
BshFI GGCC 8 cut(s) 366, 1167, 1952, 2096, 2240, 2364, 2384, 3219
BshNI GGYRCC 3 cut(s) 2067, 2211, 2844
BsiHKAI GWGCWC 4 cut(s) 147, 744, 994, 1830
BsiHKCI CYCGRG 4 cut(s) 1946, 2090, 2234, 2378
BsiSI CCGG 2 cut(s) 1805, 3221
BslFI GGGAC 3 cut(s) 591, 2708, 2872
BslI CCNNNNNNNGG 2 cut(s) 626, 2841
BsmAI GTCTC 5 cut(s) 727, 1313, 1733, 2544, 2888
BsmFI GGGAC 3 cut(s) 591, 2708, 2872
BsmI GAATGC 1 cut(s) 2731
BsnI GGCC 8 cut(s) 366, 1167, 1952, 2096, 2240, 2364, 2384, 3219
Bso31I GGTCTC 1 cut(s) 1733
BsoBI CYCGRG 4 cut(s) 1946, 2090, 2234, 2378
Bsp119I TTCGAA 1 cut(s) 819
Bsp1286I GDGCHC 5 cut(s) 147, 744, 994, 1830, 2795
Bsp13I TCCGGA 1 cut(s) 1804
Bsp1407I TGTACA 1 cut(s) 3274
Bsp19I CCATGG 4 cut(s) 1953, 2097, 2241, 2385
BspACI CCGC 8 cut(s) 636, 1262, 1693, 2215, 2436, 2624, 3007, 3152
BspANI GGCC 8 cut(s) 366, 1167, 1952, 2096, 2240, 2364, 2384, 3219
BspCNI CTCAG 5 cut(s) 255, 737, 1743, 2433, 2913
BspEI TCCGGA 1 cut(s) 1804
BspHI TCATGA 1 cut(s) 3031
BspLI GGNNCC 7 cut(s) 881, 2069, 2213, 2696, 2846, 2887, 2888
BspMAI CTGCAG 4 cut(s) 831, 1869, 2121, 2265
BspMI ACCTGC 1 cut(s) 1715
BspPI GGATC 5 cut(s) 2588, 2758, 3033, 3302, 3347
BspT104I TTCGAA 1 cut(s) 819
BspT107I GGYRCC 3 cut(s) 2067, 2211, 2844
BspTNI GGTCTC 1 cut(s) 1733
BsrDI GCAATG 1 cut(s) 396
BsrGI TGTACA 1 cut(s) 3274
BsrI ACTGG 1 cut(s) 669
BssNI GRCGYC 1 cut(s) 3149
BssT1I CCWWGG 6 cut(s) 1953, 2097, 2241, 2359, 2385, 2767
Bst2UI CCWGG 2 cut(s) 689, 2711
Bst4CI ACNGT 6 cut(s) 184, 1340, 1512, 2373, 2777, 3274
BstACI GRCGYC 1 cut(s) 3149
BstAPI GCANNNNNTGC 6 cut(s) 440, 1912, 2053, 2197, 2341, 2790
BstAUI TGTACA 1 cut(s) 3274
BstBI TTCGAA 1 cut(s) 819
BstC8I GCNNGC 6 cut(s) 769, 1973, 2117, 2261, 2405, 2438
BstDSI CCRYGG 5 cut(s) 1953, 2097, 2241, 2385, 2776
BstEII GGTNACC 1 cut(s) 2771
BstENI CCTNNNNNAGG 1 cut(s) 624
BstHHI GCGC 1 cut(s) 570
BstMAI GTCTC 5 cut(s) 727, 1313, 1733, 2544, 2888
BstNI CCWGG 2 cut(s) 689, 2711
BstNSI RCATGY 1 cut(s) 2917
BstPI GGTNACC 1 cut(s) 2771
BstSCI CCNGG 3 cut(s) 687, 2709, 3219
BstSFI CTRYAG 7 cut(s) 132, 827, 933, 1865, 2117, 2261, 2680
BstSLI GKGCMC 2 cut(s) 1830, 2795
BstV2I GAAGAC 2 cut(s) 3125, 3152
BstX2I RGATCY 3 cut(s) 415, 2488, 2763
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 3 cut(s) 415, 2488, 2763
BsuRI GGCC 8 cut(s) 366, 1167, 1952, 2096, 2240, 2364, 2384, 3219
BtgI CCRYGG 5 cut(s) 1953, 2097, 2241, 2385, 2776
BtrI CACGTC 2 cut(s) 214, 235
BtsI GCAGTG 1 cut(s) 1678
BtsIMutI CAGTG 3 cut(s) 252, 1517, 1678
BveI ACCTGC 1 cut(s) 1715
Cac8I GCNNGC 6 cut(s) 769, 1973, 2117, 2261, 2405, 2438
CaiI CAGNNNCTG 1 cut(s) 3166
CciI TCATGA 1 cut(s) 3031
CfoI GCGC 1 cut(s) 570
Cfr13I GGNCC 8 cut(s) 1336, 1655, 1695, 2695, 2802, 2886, 3218, 3228
CseI GACGC 4 cut(s) 818, 2491, 3130, 3157
Csp6I GTAC 6 cut(s) 62, 269, 472, 2845, 2944, 3275
CviQI GTAC 6 cut(s) 62, 269, 472, 2845, 2944, 3275
DraI TTTAAA 1 cut(s) 207
EaeI YGGCCR 1 cut(s) 364
EciI GGCGGA 1 cut(s) 651
Ecl136II GAGCTC 1 cut(s) 742
Eco130I CCWWGG 6 cut(s) 1953, 2097, 2241, 2359, 2385, 2767
Eco24I GRGCYC 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 1733
Eco47I GGWCC 7 cut(s) 1336, 1655, 1695, 2695, 2802, 2886, 3228
Eco53kI GAGCTC 1 cut(s) 742
Eco57I CTGAAG 5 cut(s) 27, 2027, 2549, 3137, 3143
Eco88I CYCGRG 4 cut(s) 1946, 2090, 2234, 2378
Eco91I GGTNACC 1 cut(s) 2771
EcoICRI GAGCTC 1 cut(s) 742
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 2886
EcoO65I GGTNACC 1 cut(s) 2771
EcoRII CCWGG 2 cut(s) 687, 2709
EcoT14I CCWWGG 6 cut(s) 1953, 2097, 2241, 2359, 2385, 2767
EcoT22I ATGCAT 2 cut(s) 341, 1524
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 6 cut(s) 1953, 2097, 2241, 2359, 2385, 2767
FalI AAGNNNNNCTT 2 cut(s) 1374, 1406
FaqI GGGAC 3 cut(s) 591, 2708, 2872
FauI CCCGC 2 cut(s) 2429, 3000
FbaI TGATCA 7 cut(s) 526, 1296, 1965, 2109, 2253, 2953, 3168
FblI GTMKAC 1 cut(s) 2476
FriOI GRGCYC 1 cut(s) 744
FspBI CTAG 5 cut(s) 29, 806, 978, 2486, 2672
FspI TGCGCA 1 cut(s) 569
GlaI GCGC 1 cut(s) 569
GsuI CTGGAG 2 cut(s) 2171, 2315
HaeIII GGCC 8 cut(s) 366, 1167, 1952, 2096, 2240, 2364, 2384, 3219
HapII CCGG 2 cut(s) 1805, 3221
HgaI GACGC 4 cut(s) 818, 2491, 3130, 3157
HhaI GCGC 1 cut(s) 570
Hin1I GRCGYC 1 cut(s) 3149
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HincII GTYRAC 1 cut(s) 2397
HindII GTYRAC 1 cut(s) 2397
HindIII AAGCTT 1 cut(s) 2573
HinfI GANTC 5 cut(s) 604, 684, 1436, 2753, 3163
HpaII CCGG 2 cut(s) 1805, 3221
HphI GGTGA 6 cut(s) 40, 106, 1604, 1609, 2653, 3051
Hpy166II GTNNAC 6 cut(s) 474, 1123, 1828, 2397, 2477, 2644
Hpy8I GTNNAC 6 cut(s) 474, 1123, 1828, 2397, 2477, 2644
HpyAV CCTTC 9 cut(s) 166, 319, 1009, 1580, 2501, 2519, 2666, 2845, 3146
HpyCH4III ACNGT 6 cut(s) 184, 1340, 1512, 2373, 2777, 3274
HpyCH4IV ACGT 4 cut(s) 213, 234, 1687, 1769
HpySE526I ACGT 4 cut(s) 213, 234, 1687, 1769
Hsp92I GRCGYC 1 cut(s) 3149
HspAI GCGC 1 cut(s) 568
KflI GGGWCCC 1 cut(s) 2886
Kpn2I TCCGGA 1 cut(s) 1804
KpnI GGTACC 1 cut(s) 2848
Ksp22I TGATCA 7 cut(s) 526, 1296, 1965, 2109, 2253, 2953, 3168
LmnI GCTCC 3 cut(s) 989, 1243, 1626
MaeI CTAG 5 cut(s) 29, 806, 978, 2486, 2672
MaeII ACGT 4 cut(s) 213, 234, 1687, 1769
MfeI CAATTG 6 cut(s) 35, 438, 2457, 2797, 3178, 3312
MflI RGATCY 3 cut(s) 415, 2488, 2763
MhlI GDGCHC 5 cut(s) 147, 744, 994, 1830, 2795
MlsI TGGCCA 1 cut(s) 366
MluNI TGGCCA 1 cut(s) 366
MlyI GAGTC 2 cut(s) 613, 693
MmeI TCCRAC 4 cut(s) 219, 243, 1282, 2914
Mox20I TGGCCA 1 cut(s) 366
Mph1103I ATGCAT 2 cut(s) 341, 1524
MroI TCCGGA 1 cut(s) 1804
MscI TGGCCA 1 cut(s) 366
MslI CAYNNNNRTG 6 cut(s) 1983, 2127, 2271, 2415, 2853, 3033
Msp20I TGGCCA 1 cut(s) 366
MspA1I CMGCKG 1 cut(s) 3154
MspI CCGG 2 cut(s) 1805, 3221
MspR9I CCNGG 3 cut(s) 689, 2711, 3221
MunI CAATTG 6 cut(s) 35, 438, 2457, 2797, 3178, 3312
Mva1269I GAATGC 1 cut(s) 2731
MvaI CCWGG 2 cut(s) 689, 2711
NciI CCSGG 1 cut(s) 3221
NcoI CCATGG 4 cut(s) 1953, 2097, 2241, 2385
NlaIV GGNNCC 7 cut(s) 881, 2069, 2213, 2696, 2846, 2887, 2888
NmeAIII GCCGAG 1 cut(s) 1760
NmuCI GTSAC 5 cut(s) 389, 800, 952, 1781, 3057
NsbI TGCGCA 1 cut(s) 569
NsiI ATGCAT 2 cut(s) 341, 1524
NspI RCATGY 1 cut(s) 2917
NspV TTCGAA 1 cut(s) 819
PacI TTAATTAA 1 cut(s) 2817
PagI TCATGA 1 cut(s) 3031
PciI ACATGT 1 cut(s) 2913
PcsI WCGNNNNNNNCGW 3 cut(s) 219, 816, 1815
PctI GAATGC 1 cut(s) 2731
PfeI GAWTC 3 cut(s) 1436, 2753, 3163
PfoI TCCNGGA 2 cut(s) 687, 2709
PleI GAGTC 2 cut(s) 612, 692
PpsI GAGTC 2 cut(s) 612, 692
PpuMI RGGWCCY 1 cut(s) 2886
PscI ACATGT 1 cut(s) 2913
Psp124BI GAGCTC 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 2886
Psp6I CCWGG 2 cut(s) 687, 2709
PspEI GGTNACC 1 cut(s) 2771
PspGI CCWGG 2 cut(s) 687, 2709
PspN4I GGNNCC 7 cut(s) 881, 2069, 2213, 2696, 2846, 2887, 2888
PspPI GGNCC 8 cut(s) 1336, 1655, 1695, 2695, 2802, 2886, 3218, 3228
PspPPI RGGWCCY 1 cut(s) 2886
PstI CTGCAG 4 cut(s) 831, 1869, 2121, 2265
PstNI CAGNNNCTG 1 cut(s) 3166
PsuI RGATCY 3 cut(s) 415, 2488, 2763
RsaI GTAC 6 cut(s) 63, 270, 473, 2846, 2945, 3276
RsaNI GTAC 6 cut(s) 62, 269, 472, 2845, 2944, 3275
RseI CAYNNNNRTG 6 cut(s) 1983, 2127, 2271, 2415, 2853, 3033
SacI GAGCTC 1 cut(s) 744
Sau96I GGNCC 8 cut(s) 1336, 1655, 1695, 2695, 2802, 2886, 3218, 3228
ScaI AGTACT 1 cut(s) 2945
SchI GAGTC 2 cut(s) 613, 693
ScrFI CCNGG 3 cut(s) 689, 2711, 3221
SduI GDGCHC 5 cut(s) 147, 744, 994, 1830, 2795
SfcI CTRYAG 7 cut(s) 132, 827, 933, 1865, 2117, 2261, 2680
SfuI TTCGAA 1 cut(s) 819
SinI GGWCC 7 cut(s) 1336, 1655, 1695, 2695, 2802, 2886, 3228
SmiMI CAYNNNNRTG 6 cut(s) 1983, 2127, 2271, 2415, 2853, 3033
SmlI CTYRAG 3 cut(s) 1831, 2891, 2990
SmoI CTYRAG 3 cut(s) 1831, 2891, 2990
SsiI CCGC 8 cut(s) 636, 1262, 1693, 2215, 2436, 2624, 3007, 3152
SspMI CTAG 5 cut(s) 29, 806, 978, 2486, 2672
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 3 cut(s) 687, 2709, 3219
StyI CCWWGG 6 cut(s) 1953, 2097, 2241, 2359, 2385, 2767
TaaI ACNGT 6 cut(s) 184, 1340, 1512, 2373, 2777, 3274
TaiI ACGT 4 cut(s) 216, 237, 1690, 1772
TaqI TCGA 8 cut(s) 376, 797, 819, 1090, 1584, 3174, 3255, 3297
TatI WGTACW 3 cut(s) 471, 2943, 3274
TauI GCSGC 2 cut(s) 2217, 3154
TfiI GAWTC 3 cut(s) 1436, 2753, 3163
TscAI CASTG 3 cut(s) 259, 1517, 1685
TseFI GTSAC 5 cut(s) 389, 800, 952, 1781, 3057
Tsp45I GTSAC 5 cut(s) 389, 800, 952, 1781, 3057
TspGWI ACGGA 3 cut(s) 10, 1613, 2494
TspRI CASTG 3 cut(s) 259, 1517, 1685
VneI GTGCAC 1 cut(s) 1826
VpaK11BI GGWCC 7 cut(s) 1336, 1655, 1695, 2695, 2802, 2886, 3228
XagI CCTNNNNNAGG 1 cut(s) 624
XapI RAATTY 7 cut(s) 258, 694, 1093, 1477, 1493, 1774, 2740
XceI RCATGY 1 cut(s) 2917
XmiI GTMKAC 1 cut(s) 2476
XspI CTAG 5 cut(s) 29, 806, 978, 2486, 2672
ZrmI AGTACT 1 cut(s) 2945
Zsp2I ATGCAT 2 cut(s) 341, 1524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.