Rroxscaffold_2G00109920

disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
34161779 .. 34171102
9324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109920.1

Sequence Viewer

Length: 1497 bp
ATGCATGATATTGTACATGACTTTCTCCAATATTTAACCAAGAATGAATGTTTAATCGTTGAGTTCAAAGGTGGGGAGGAGAGAATAGAATTGCCCAATAAGCTTGGTCATTTGACCATAATGTTTGCACCCTGTGGACCTTTTCCCCTTTCTTTTGACCACTGCCAACGTCTGCGGACTATTACAACATTTAATTGTACAATTACAAGTCTCAACCGAGAGTTAATTTTACAAATAAAATGCGTGAGGACGTTGAATTTGAGTCACAACGATATCGAAGAAGTTCCGGACGAGATTGGCGTGTTGGTGCACTTGAGGTATTTGGATTTATCTTGGAATGAGAGGTTGAAGAAATTACCTGATAGTTTGTGTAATTTAGTCAATTTGCAAACCTTGCGAGTTGATTGGTGCGAGGAGTTAGAAAAGTTACCCGAGGCCATGGGAAAGTTGACCAGCTTGCAGCATCTTCATGCTGGAGCGCTGAAGTTGCCCAAATCAATTGCGAGGTTGAAAAGTCTACGGACGCTAGATCTGCAGGTTGTAATTGAAGGTAGTGGAGATGAAGAAGGATTGAGGTTAAGTGATTTGAGAGACATGGACGAGCTTCAGGGGGTGCTTGCTATCAGCTTGGAGGGGAAATTGAAAGATAGTGCTGCGAGTGATGCGGAGAAAGCTAAATTGGTGAACAAGAAACACCTTCTTCATTTGGTACTATGGTTCAGCTGGGAGAGGGAGAGCGAGAGCGAGGGCAACCAGAGTAGCATCCAGGAAGCAGTATTGAATGTCTTACAGCCAAATTCAAATCTTGAATCCTTAGAGATCCAAGGTTACGGTGGCAGCACCCTGTACTACCCCAATTGGACCTCCTCTTTAATTAACTTGAAAAGCCTGACCTTCTCTGGGTACGATGTTTGTAAGTATGTGCCTCTTTCGGTTTTTGGCTACTTGGGGTCCCTTGAGAGACTCAAATTTGATTACATGAAAGAAGTGAAAAAGGTTGGATTTGAGTACTCACTTGATCATCAAGTTATATTGTTCCCCAATCTGAAACAACTCGAGTTCGAGGATTTGCCGGAGTGGGAAGAACGGGATCATGATGAGAATGATGCTACTTCATCGTCACCAACTTGTTTCATGCCACGCCTTTCTACTTTATCCATCTATAGATGCGATAAGCTGAAGACACTGCCAGACTTCCTTCCAAGGAAGACGCCGCTGCTTCAGAATTTGAACATCAACGAGTGTTGCATTCTCTCCCAAAGTTGCAAAGACAGGCAAGGCCCGGAGTGGTCCAAGATTTCTCACATCCCAAACATCGAAATTGATTGGAAAACTGTACAAAAAGATGGAGTTTGGATCGAACAAGAGGAAGCAATTGATGAAGAAACTGATGTAGAAATTGATGAAGAAACTGATGTAGAAATTGATGAAGAAATTGATGAAGCAATTGATGAAGAAACTGATGTAGAAATTGATGAAGAAAGTGATCCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

57.12

Weight (kDa)

4.62

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 58 - 355 1.9e-27 Leucine-rich repeat region
LRR_8 PF13855 82 - 137 3.6e-07 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 193 - 327 5.1e-24 R13L1/DRL21 LRRs
LRR_RPS2 PF23247 289 - 415 8.8e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 526
AccI GTMKAC 1 cut(s) 517
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 3 cut(s) 175, 665, 1214
AclWI GGATC 4 cut(s) 814, 1098, 1364, 1481
AcsI RAATTY 4 cut(s) 256, 796, 968, 1225
AcuI CTGAAG 4 cut(s) 503, 590, 1199, 1205
AcyI GRCGYC 1 cut(s) 1211
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 7 cut(s) 15, 199, 711, 848, 905, 1010, 1338
AfeI AGCGCT 1 cut(s) 480
AfiI CCNNNNNNNGG 1 cut(s) 900
AjnI CCWGG 1 cut(s) 765
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AluBI AGCT 7 cut(s) 103, 456, 604, 627, 674, 723, 1177
AluI AGCT 7 cut(s) 103, 456, 604, 627, 674, 723, 1177
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 3 cut(s) 215, 585, 955
Alw44I GTGCAC 1 cut(s) 308
AlwI GGATC 4 cut(s) 814, 1098, 1364, 1481
Ama87I CYCGRG 2 cut(s) 431, 1055
Aor13HI TCCGGA 1 cut(s) 286
Aor51HI AGCGCT 1 cut(s) 480
AoxI GGCC 2 cut(s) 435, 1279
ApaLI GTGCAC 1 cut(s) 308
ApeKI GCWGC 4 cut(s) 460, 653, 837, 1216
ApoI RAATTY 4 cut(s) 256, 796, 968, 1225
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
Asp700I GAANNNNTTC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 5 cut(s) 137, 861, 951, 1280, 1290
AsuC2I CCSGG 1 cut(s) 1283
AsuHPI GGTGA 2 cut(s) 694, 1113
AvaI CYCGRG 2 cut(s) 431, 1055
AvaII GGWCC 4 cut(s) 137, 861, 951, 1290
BaeGI GKGCMC 1 cut(s) 312
BaeI ACNNNNGTAYC 2 cut(s) 701, 734
BbsI GAAGAC 2 cut(s) 1187, 1214
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 4 cut(s) 472, 640, 849, 1203
BccI CCATC 2 cut(s) 1166, 1340
BciT130I CCWGG 1 cut(s) 767
BclI TGATCA 1 cut(s) 1018
BcnI CCSGG 1 cut(s) 1283
BcoDI GTCTC 3 cut(s) 215, 585, 955
BfaI CTAG 1 cut(s) 527
BfmI CTRYAG 2 cut(s) 533, 1162
BfoI RGCGCY 1 cut(s) 482
BfuAI ACCTGC 1 cut(s) 526
BglII AGATCT 1 cut(s) 529
BisI GCNGC 5 cut(s) 461, 654, 838, 1214, 1217
BlsI GCNGC 5 cut(s) 462, 655, 839, 1215, 1218
BmcAI AGTACT 1 cut(s) 1010
Bme1390I CCNGG 2 cut(s) 767, 1283
Bme18I GGWCC 4 cut(s) 137, 861, 951, 1290
BmeT110I CYCGRG 2 cut(s) 431, 1055
BmgT120I GGNCC 5 cut(s) 137, 861, 951, 1280, 1290
BmiI GGNNCC 2 cut(s) 952, 953
BmrFI CCNGG 2 cut(s) 767, 1283
BmsI GCATC 5 cut(s) 472, 652, 771, 1096, 1157
BpiI GAAGAC 2 cut(s) 1187, 1214
BpmI CTGGAG 1 cut(s) 495
BpuEI CTTGAG 2 cut(s) 334, 977
BpuMI CCSGG 1 cut(s) 1283
BsaHI GRCGYC 1 cut(s) 1211
BsaJI CCNNGG 4 cut(s) 432, 438, 823, 1202
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 900
BseAI TCCGGA 1 cut(s) 286
BseBI CCWGG 1 cut(s) 767
BseDI CCNNGG 4 cut(s) 432, 438, 823, 1202
BseGI GGATG 2 cut(s) 762, 1305
BseLI CCNNNNNNNGG 1 cut(s) 900
BseRI GAGGAG 3 cut(s) 92, 428, 856
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 4 cut(s) 472, 640, 849, 1203
BseYI CCCAGC 1 cut(s) 723
BshFI GGCC 2 cut(s) 437, 1281
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 2 cut(s) 431, 1055
BsiSI CCGG 3 cut(s) 287, 1073, 1283
BslFI GGGAC 1 cut(s) 937
BslI CCNNNNNNNGG 1 cut(s) 900
BsmAI GTCTC 3 cut(s) 215, 585, 955
BsmFI GGGAC 1 cut(s) 937
BsmI GAATGC 1 cut(s) 1248
BsnI GGCC 2 cut(s) 437, 1281
BsoBI CYCGRG 2 cut(s) 431, 1055
Bsp1286I GDGCHC 1 cut(s) 312
Bsp13I TCCGGA 1 cut(s) 286
Bsp1407I TGTACA 3 cut(s) 13, 197, 1336
Bsp143I GATC 6 cut(s) 529, 819, 1018, 1090, 1356, 1486
Bsp19I CCATGG 1 cut(s) 438
BspACI CCGC 3 cut(s) 175, 665, 1214
BspANI GGCC 2 cut(s) 437, 1281
BspEI TCCGGA 1 cut(s) 286
BspHI TCATGA 1 cut(s) 1093
BspLI GGNNCC 2 cut(s) 952, 953
BspMAI CTGCAG 1 cut(s) 537
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 4 cut(s) 814, 1098, 1364, 1481
BsrGI TGTACA 3 cut(s) 13, 197, 1336
BssECI CCNNGG 4 cut(s) 432, 438, 823, 1202
BssMI GATC 6 cut(s) 529, 819, 1018, 1090, 1356, 1486
BssNI GRCGYC 1 cut(s) 1211
BssT1I CCWWGG 3 cut(s) 438, 823, 1202
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 2 cut(s) 833, 1336
BstACI GRCGYC 1 cut(s) 1211
BstAPI GCANNNNNTGC 1 cut(s) 394
BstAUI TGTACA 3 cut(s) 13, 197, 1336
BstC8I GCNNGC 2 cut(s) 458, 618
BstDEI CTNAG 1 cut(s) 814
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 762, 1305
BstH2I RGCGCY 1 cut(s) 482
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 6 cut(s) 532, 822, 1021, 1093, 1359, 1489
BstMAI GTCTC 3 cut(s) 215, 585, 955
BstMBI GATC 6 cut(s) 529, 819, 1018, 1090, 1356, 1486
BstMWI GCNNNNNNNGC 6 cut(s) 100, 394, 487, 532, 662, 671
BstNI CCWGG 1 cut(s) 767
BstSCI CCNGG 2 cut(s) 765, 1281
BstSFI CTRYAG 2 cut(s) 533, 1162
BstSLI GKGCMC 1 cut(s) 312
BstV1I GCAGC 4 cut(s) 472, 640, 849, 1203
BstV2I GAAGAC 2 cut(s) 1187, 1214
BstX2I RGATCY 2 cut(s) 529, 819
BstYI RGATCY 2 cut(s) 529, 819
BsuRI GGCC 2 cut(s) 437, 1281
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 2 cut(s) 762, 1305
BtsI GCAGTG 2 cut(s) 160, 1184
BtsIMutI CAGTG 2 cut(s) 160, 1184
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 458, 618
CciI TCATGA 1 cut(s) 1093
CfoI GCGC 1 cut(s) 481
Cfr13I GGNCC 5 cut(s) 137, 861, 951, 1280, 1290
CseI GACGC 2 cut(s) 532, 1219
Csp6I GTAC 7 cut(s) 14, 198, 710, 847, 904, 1009, 1337
CviAII CATG 8 cut(s) 5, 17, 439, 470, 595, 979, 1094, 1135
CviQI GTAC 7 cut(s) 14, 198, 710, 847, 904, 1009, 1337
DdeI CTNAG 1 cut(s) 814
DpnI GATC 6 cut(s) 531, 821, 1020, 1092, 1358, 1488
DpnII GATC 6 cut(s) 529, 819, 1018, 1090, 1356, 1486
DraIII CACNNNGTG 1 cut(s) 134
Eco130I CCWWGG 3 cut(s) 438, 823, 1202
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 4 cut(s) 137, 861, 951, 1290
Eco47III AGCGCT 1 cut(s) 480
Eco57I CTGAAG 4 cut(s) 503, 590, 1199, 1205
Eco88I CYCGRG 2 cut(s) 431, 1055
EcoO109I RGGNCCY 1 cut(s) 951
EcoRII CCWGG 1 cut(s) 765
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 3 cut(s) 438, 823, 1202
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 438, 823, 1202
FaeI CATG 8 cut(s) 8, 20, 442, 473, 598, 982, 1097, 1138
FaqI GGGAC 1 cut(s) 937
FatI CATG 8 cut(s) 4, 16, 438, 469, 594, 978, 1093, 1134
FbaI TGATCA 1 cut(s) 1018
FblI GTMKAC 1 cut(s) 517
Fnu4HI GCNGC 5 cut(s) 461, 654, 838, 1214, 1217
FokI GGATG 2 cut(s) 749, 1292
Fsp4HI GCNGC 5 cut(s) 461, 654, 838, 1214, 1217
FspBI CTAG 1 cut(s) 527
GlaI GCGC 1 cut(s) 480
GluI GCNGC 5 cut(s) 461, 654, 838, 1214, 1217
GsaI CCCAGC 1 cut(s) 727
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 482
HaeIII GGCC 2 cut(s) 437, 1281
HapII CCGG 3 cut(s) 287, 1073, 1283
HgaI GACGC 2 cut(s) 532, 1219
HhaI GCGC 1 cut(s) 481
Hin1I GRCGYC 1 cut(s) 1211
Hin1II CATG 8 cut(s) 8, 20, 442, 473, 598, 982, 1097, 1138
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 3 cut(s) 262, 809, 963
HpaII CCGG 3 cut(s) 287, 1073, 1283
HphI GGTGA 2 cut(s) 694, 1113
Hpy166II GTNNAC 5 cut(s) 137, 310, 450, 518, 685
Hpy188I TCNGA 2 cut(s) 1047, 1224
Hpy188III TCNNGA 3 cut(s) 287, 806, 1094
Hpy8I GTNNAC 5 cut(s) 137, 310, 450, 518, 685
HpyAV CCTTC 5 cut(s) 542, 560, 707, 904, 1208
HpyCH4III ACNGT 2 cut(s) 833, 1336
HpyCH4IV ACGT 2 cut(s) 169, 251
HpyCH4V TGCA 8 cut(s) 4, 128, 310, 388, 460, 535, 1248, 1266
HpyF10VI GCNNNNNNNGC 6 cut(s) 100, 394, 487, 532, 662, 671
HpyF3I CTNAG 1 cut(s) 814
HpySE526I ACGT 2 cut(s) 169, 251
Hsp92I GRCGYC 1 cut(s) 1211
Hsp92II CATG 8 cut(s) 8, 20, 442, 473, 598, 982, 1097, 1138
HspAI GCGC 1 cut(s) 479
KflI GGGWCCC 1 cut(s) 951
Kpn2I TCCGGA 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 1018
Kzo9I GATC 6 cut(s) 529, 819, 1018, 1090, 1356, 1486
LmnI GCTCC 1 cut(s) 476
Lsp1109I GCAGC 4 cut(s) 472, 640, 849, 1203
LweI GCATC 5 cut(s) 472, 652, 771, 1096, 1157
MaeI CTAG 1 cut(s) 527
MaeII ACGT 2 cut(s) 169, 251
MaeIII GTNAC 4 cut(s) 263, 426, 827, 1119
MalI GATC 6 cut(s) 531, 821, 1020, 1092, 1358, 1488
MboI GATC 6 cut(s) 529, 819, 1018, 1090, 1356, 1486
MfeI CAATTG 4 cut(s) 498, 856, 1374, 1446
MflI RGATCY 2 cut(s) 529, 819
MhlI GDGCHC 1 cut(s) 312
MlyI GAGTC 2 cut(s) 271, 957
MmeI TCCRAC 1 cut(s) 979
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 7 cut(s) 35, 53, 192, 224, 578, 872, 876
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 2 cut(s) 723, 1216
MspI CCGG 3 cut(s) 287, 1073, 1283
MspR9I CCNGG 2 cut(s) 767, 1283
MunI CAATTG 4 cut(s) 498, 856, 1374, 1446
Mva1269I GAATGC 1 cut(s) 1248
MvaI CCWGG 1 cut(s) 767
MwoI GCNNNNNNNGC 6 cut(s) 100, 394, 487, 532, 662, 671
NciI CCSGG 1 cut(s) 1283
NcoI CCATGG 1 cut(s) 438
NdeII GATC 6 cut(s) 529, 819, 1018, 1090, 1356, 1486
NlaIII CATG 8 cut(s) 8, 20, 442, 473, 598, 982, 1097, 1138
NlaIV GGNNCC 2 cut(s) 952, 953
NmuCI GTSAC 2 cut(s) 263, 1119
NsiI ATGCAT 1 cut(s) 6
PacI TTAATTAA 1 cut(s) 876
PaeR7I CTCGAG 1 cut(s) 1055
PagI TCATGA 1 cut(s) 1093
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PctI GAATGC 1 cut(s) 1248
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 809
PfoI TCCNGGA 1 cut(s) 765
PkrI GCNGC 5 cut(s) 462, 655, 839, 1215, 1218
PleI GAGTC 2 cut(s) 270, 957
PpsI GAGTC 2 cut(s) 270, 957
PpuMI RGGWCCY 1 cut(s) 951
Psp5II RGGWCCY 1 cut(s) 951
Psp6I CCWGG 1 cut(s) 765
PspFI CCCAGC 1 cut(s) 723
PspGI CCWGG 1 cut(s) 765
PspN4I GGNNCC 2 cut(s) 952, 953
PspPI GGNCC 5 cut(s) 137, 861, 951, 1280, 1290
PspPPI RGGWCCY 1 cut(s) 951
PspXI VCTCGAGB 1 cut(s) 1055
PstI CTGCAG 1 cut(s) 537
PsuI RGATCY 2 cut(s) 529, 819
PvuII CAGCTG 1 cut(s) 723
RsaI GTAC 7 cut(s) 15, 199, 711, 848, 905, 1010, 1338
RsaNI GTAC 7 cut(s) 14, 198, 710, 847, 904, 1009, 1337
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 7 cut(s) 35, 53, 192, 224, 578, 872, 876
SatI GCNGC 5 cut(s) 461, 654, 838, 1214, 1217
Sau3AI GATC 6 cut(s) 529, 819, 1018, 1090, 1356, 1486
Sau96I GGNCC 5 cut(s) 137, 861, 951, 1280, 1290
ScaI AGTACT 1 cut(s) 1010
SchI GAGTC 2 cut(s) 271, 957
ScrFI CCNGG 2 cut(s) 767, 1283
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 5 cut(s) 472, 652, 771, 1096, 1157
SfcI CTRYAG 2 cut(s) 533, 1162
Sfr274I CTCGAG 1 cut(s) 1055
SinI GGWCC 4 cut(s) 137, 861, 951, 1290
SlaI CTCGAG 1 cut(s) 1055
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 3 cut(s) 313, 956, 1055
SmoI CTYRAG 3 cut(s) 313, 956, 1055
SsiI CCGC 3 cut(s) 175, 665, 1214
SspI AATATT 1 cut(s) 32
SspMI CTAG 1 cut(s) 527
StyD4I CCNGG 2 cut(s) 765, 1281
StyI CCWWGG 3 cut(s) 438, 823, 1202
TaaI ACNGT 2 cut(s) 833, 1336
TaiI ACGT 2 cut(s) 172, 254
TaqI TCGA 5 cut(s) 276, 1056, 1062, 1317, 1359
TatI WGTACW 5 cut(s) 13, 197, 846, 1008, 1336
TauI GCSGC 1 cut(s) 1216
TfiI GAWTC 1 cut(s) 809
Tru1I TTAA 7 cut(s) 35, 53, 192, 224, 578, 872, 876
Tru9I TTAA 7 cut(s) 35, 53, 192, 224, 578, 872, 876
TscAI CASTG 2 cut(s) 167, 1191
TseFI GTSAC 2 cut(s) 263, 1119
TseI GCWGC 4 cut(s) 460, 653, 837, 1216
Tsp45I GTSAC 2 cut(s) 263, 1119
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 2 cut(s) 167, 1191
VneI GTGCAC 1 cut(s) 308
VpaK11BI GGWCC 4 cut(s) 137, 861, 951, 1290
XapI RAATTY 4 cut(s) 256, 796, 968, 1225
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XhoI CTCGAG 1 cut(s) 1055
XmiI GTMKAC 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 1 cut(s) 527
ZrmI AGTACT 1 cut(s) 1010
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.