MD08G1047100.v1.1

disease resistance protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
3558244 .. 3562354
4111 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1047100.v1.1.491

Sequence Viewer

Length: 2634 bp
ATGCTACTGGATCGGCTGGCTTCAACAGTTTACGAGTACGTTGACGGAGAGGTGAAACTTGTTTTGAACGCTAAGAAAGACGTTGAAGACTTTGCTGGCAATCTCAGAGCTATTCAAGCCGTTCTCGAAGATGCGGAGCAAAGGCAAGTCAAGGAGGCCAGCATGAGGATCTGGTTGGATCAGCTCAAAAACATATCGTTCCAGATGGTGGACGTGCTGGACGAGTGGAACACTAACATGCTGAGACAACAGGTTGAGAAGCAAGAACGAGAAGGTGAAAATGCTCCTGTTCCTGAGAAGAAGAGAAGAAAAAGAAATAAGTATGGGTTTCAACACATAGAAAGAGGCATTCAAGAATTACCTGAACGGCAGAAGACTTCGTCTTTTGTCGTCGTGTCGGAGGTATTTGGTCGAGAAAAGGAAAAAGACAATCTGATAACAAAGTTGTTGAGTGATGGTGGAGAAGATCGGAGGGGGCTCCTTATCATCCCTATTCTAGGGATGGGAGGAGCGGGAAAAACAACTCTAGCCCAACTTGTTTATAATGATGACAAGGTTAAAGCCTATTTTGAAAAAAGAGTGTGGGTTTGTGTCTCAGATCCTTTTGATGAGATTAAGATTGCCAAAGCTATATGCGGTGATAATGCCCCAAACTCAAATGAGTTAGATCAAGTCTTGCAACATATGTCATCATCCATCGAGGGCAAAAGGTTTCTCCTTGTCCTAGATGATGTGTGGACCCACGACCGTGAAAAGTGGGAAAAATTAAGGGCATCACTAATTCAAAGTGGTGCTCATGGCAAGAGAATATTGGTGACCACAAGACAACACGATGTTGTTGATATGATGAGAGCACGAAGCGACATGATCAATTTGGAAGAGTTGAGCGAAGAATATTGTTTATCAATCTTCAACCACATGGCGTTTGTTGATGTAGAAGTAGAAGAGTCCAAGGTGTTTGAAGATATTAGTAAGGATATTGTGAAGAAATGCAAGTGTTTACCTCTCGCTGCAAAGGCTTTAGGTGGTCTCATGTATAATAAGAAAACAAGGAGGGAATGGCTAGATGTCTTGAATAGTAAAATATGGGATCAAGAAGAGGTGGAGCAAGAAGTTTTTCAACCACTTTTTATAAGTTATTATGATTTGGCCTCAGCAATCAAATGTTGTCTTTTGTATTGTGCTTGTTTTCCTAAAAATTATAAGTGTAAGAGGCATGAGTTGATTAATCTTTGGATGGCACAAGATTATCTTAATTCAAAAGGAAATAAAGATGAGGGAGAAGTTGGTCAAACATTTTTTGATAACTTAGTAGCACGGTCTTTTTTTCAAGATTTGGAGAAGGATAGTGCTTTGGGTGAAAAGGTTCGCCATTTGACCGTAAGACTGAAACCTGGTGAGCCACTCCCACCTTCGAATGCATATTACAATTGCAAAAATCTACGTTCACTCACAAAAATCTCATATTCGAGGTTTGATACATCTATTGCTATGATAGACTCAAACTTTATTCTACAATTGAAATATCTTAGGACATTAAATTTGAGTTACAGTAGCATAAGTGAAGTCCCTAAGGAAATTTGTGAATTGATACATTTGAGGCACATTGATTTGTCATGGAATCATGGTTTTAAGAGATTGCCGGACAGTATCTGTGAGTTGTACAATTTGTATACCATGCGCCTCCTTAGTTGCTGGTCACTTGAAAAACTACCTGATAACATGGGAAAGTTGATTAGCTTAAAGTACCTTGATGTTTTGGGCTGTCATAAGCTGGAGTACTTGCCAAAAGGGATTCGGAGATTAAAAAAAAGTTTGAAAACAGTAGATGGGTTTGTTGTGGTTTATGGTGAGGATGAGGACAGAGCATTACAACTGGCAGATCTGAGAGTCTTTAGCCTCCAGGGTAGACTCACCATAAAATTGAAGGGGAATGTGAAAGATGAGAGGGAGCTTGAGAAGGCGCAGTTGTGGGACTTGAAGCAATTATTTCATCTTGGAATTGATTCTAAGGATGTCTTGTACAAGCAGATGAGAAGCACAATCGAAATACTGAATGCTTTACGACCGCATGAAAATCTGGAATCCATATGCATTTCCTATCATTCAGGCGCCACCTGCCCCAGTTGGATGATGTCTTTGCACAACTTAAGAATCATTAGTCTATCTAGATGGAGTGAATGCAAGTTTTTGCCTCCTCTTGGGAAATTGCCCCACCTTGAAAAGCTGACTATGTATGGTATGGAGAAGGTGGAAAAGATTGGTGGTGAATTTTTGGGAATAGTTGACTCAGATGAAACGTCGTTGACATCATCATCATCATCCACCTCATTTTTTCCAAAGTTGAAAGAATTCGAAATTTGTTTCATGTCAACGTTGGAGGAGTGGGAAGTAGGCGTGGAAGGGTGGAACAAAGAGGATTCTGAAATTTCAATCATGCCATGTCTTTCCTCTTTAGAAATTAGTTACTGTAAAGGCATAAAAACACTGCCAGACTTCCTCTGCAAAACACCACTGCAGGATCTTATCATTAAGGCTTGTCCCATGCTTTCAGAGCGATGTGAACAAAGCAGTGGAGAGGAGTGGCCCAAGATTTCTCACATCCCAAACATCAAAATCTCAACATACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

878

Amino Acids

101.15

Weight (kDa)

6.15

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 89 1.3e-18 Rx N-terminal domain
NB-ARC PF00931 139 - 309 2.1e-31 NB-ARC domain
WHD_DRP PF23559 397 - 449 6.1e-16 Disease resistance protein Winged helix domain
LRR_14 PF23598 493 - 821 7.4e-20 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 630 - 748 5.4e-23 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 543, 1133, 1203
AarI CACCTGC 1 cut(s) 2126
Acc36I ACCTGC 1 cut(s) 2126
AccB1I GGYRCC 1 cut(s) 2111
AccB7I CCANNNNNTGG 1 cut(s) 208
AccBSI CCGCTC 1 cut(s) 512
AccI GTMKAC 2 cut(s) 1673, 1909
AciI CCGC 4 cut(s) 134, 512, 636, 2069
AclI AACGTT 1 cut(s) 2375
AclWI GGATC 6 cut(s) 18, 176, 186, 593, 1098, 2529
AcsI RAATTY 6 cut(s) 1540, 1578, 2270, 2351, 2358, 2427
AcyI GRCGYC 1 cut(s) 2112
AfaI GTAC 5 cut(s) 38, 1664, 1748, 1781, 2024
AfiI CCNNNNNNNGG 4 cut(s) 165, 208, 497, 2201
AflII CTTAAG 1 cut(s) 2149
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 2 cut(s) 1393, 1902
AleI CACNNNNGTG 1 cut(s) 747
AluBI AGCT 7 cut(s) 110, 184, 629, 1740, 1774, 1954, 2227
AluI AGCT 7 cut(s) 110, 184, 629, 1740, 1774, 1954, 2227
Alw21I GWGCWC 2 cut(s) 796, 856
Alw26I GTCTC 3 cut(s) 238, 598, 1034
AlwI GGATC 6 cut(s) 18, 176, 186, 593, 1098, 2529
AlwNI CAGNNNCTG 1 cut(s) 1653
AoxI GGCC 3 cut(s) 156, 1149, 2585
ApeKI GCWGC 1 cut(s) 1010
ApoI RAATTY 6 cut(s) 1540, 1578, 2270, 2351, 2358, 2427
ArsI GACNNNNNNTTYG 2 cut(s) 1525, 1557
AseI ATTAAT 1 cut(s) 1227
Asp700I GAANNNNTTC 4 cut(s) 1116, 1365, 2005, 2351
AspLEI GCGC 3 cut(s) 1683, 1966, 2114
AspS9I GGNCC 2 cut(s) 738, 2586
AsuHPI GGTGA 9 cut(s) 64, 287, 650, 826, 1370, 1409, 1862, 1906, 2279
AsuII TTCGAA 2 cut(s) 1415, 2355
AvaII GGWCC 1 cut(s) 738
AxyI CCTNAGG 1 cut(s) 1572
BanI GGYRCC 1 cut(s) 2111
BanII GRGCYC 1 cut(s) 480
BbsI GAAGAC 2 cut(s) 93, 380
Bbv12I GWGCWC 2 cut(s) 796, 856
BbvCI CCTCAGC 1 cut(s) 1153
BbvI GCAGC 1 cut(s) 997
BccI CCATC 7 cut(s) 199, 449, 496, 704, 1231, 1823, 2166
BceAI ACGGC 2 cut(s) 104, 383
BciT130I CCWGG 2 cut(s) 1395, 1904
BclI TGATCA 1 cut(s) 867
BcoDI GTCTC 3 cut(s) 238, 598, 1034
BfaI CTAG 5 cut(s) 497, 527, 725, 1064, 2169
BfmI CTRYAG 1 cut(s) 2516
BfoI RGCGCY 1 cut(s) 2115
BfrI CTTAAG 1 cut(s) 2149
BfuAI ACCTGC 1 cut(s) 2126
BglII AGATCT 1 cut(s) 1882
BisI GCNGC 1 cut(s) 1011
BlsI GCNGC 1 cut(s) 1012
BmcAI AGTACT 1 cut(s) 1781
Bme1390I CCNGG 2 cut(s) 1395, 1904
Bme18I GGWCC 1 cut(s) 738
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 738, 2586
BmiI GGNNCC 3 cut(s) 479, 740, 2113
BmrFI CCNGG 2 cut(s) 1395, 1904
BmrI ACTGGG 1 cut(s) 2118
BmsI GCATC 2 cut(s) 121, 782
BmuI ACTGGG 1 cut(s) 2118
BpiI GAAGAC 2 cut(s) 93, 380
BpmI CTGGAG 2 cut(s) 1796, 1886
Bpu10I CCTNAGC 1 cut(s) 1153
Bpu14I TTCGAA 2 cut(s) 1415, 2355
BpuEI CTTGAG 1 cut(s) 1976
BsaHI GRCGYC 1 cut(s) 2112
BsaI GGTCTC 1 cut(s) 1034
BsaJI CCNNGG 2 cut(s) 951, 1903
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 208, 497, 2201
Bse1I ACTGG 4 cut(s) 12, 1881, 2124, 2633
Bse21I CCTNAGG 1 cut(s) 1572
BseBI CCWGG 2 cut(s) 1395, 1904
BseDI CCNNGG 2 cut(s) 951, 1903
BseGI GGATG 9 cut(s) 486, 507, 692, 1242, 1861, 2020, 2136, 2321, 2601
BseLI CCNNNNNNNGG 4 cut(s) 165, 208, 497, 2201
BseMII CTCAG 7 cut(s) 118, 233, 285, 609, 1167, 1877, 2304
BseNI ACTGG 4 cut(s) 12, 1881, 2124, 2633
BseRI GAGGAG 4 cut(s) 522, 2187, 2396, 2594
BseXI GCAGC 1 cut(s) 997
Bsh1285I CGRYCG 2 cut(s) 748, 2069
BshFI GGCC 3 cut(s) 158, 1151, 2587
BshNI GGYRCC 1 cut(s) 2111
BsiEI CGRYCG 2 cut(s) 748, 2069
BsiHKAI GWGCWC 2 cut(s) 796, 856
BsiSI CCGG 1 cut(s) 1643
BslFI GGGAC 3 cut(s) 1553, 1988, 2526
BslI CCNNNNNNNGG 4 cut(s) 165, 208, 497, 2201
BsmAI GTCTC 3 cut(s) 238, 598, 1034
BsmFI GGGAC 3 cut(s) 1553, 1988, 2526
BsmI GAATGC 4 cut(s) 348, 1423, 2062, 2186
BsnI GGCC 3 cut(s) 158, 1151, 2587
Bso31I GGTCTC 1 cut(s) 1034
Bsp119I TTCGAA 2 cut(s) 1415, 2355
Bsp1286I GDGCHC 3 cut(s) 480, 796, 856
Bsp1407I TGTACA 2 cut(s) 1662, 2022
BspACI CCGC 4 cut(s) 134, 512, 636, 2069
BspANI GGCC 3 cut(s) 158, 1151, 2587
BspCNI CTCAG 7 cut(s) 117, 234, 286, 608, 1166, 1878, 2303
BspLI GGNNCC 3 cut(s) 479, 740, 2113
BspMAI CTGCAG 1 cut(s) 2520
BspMI ACCTGC 1 cut(s) 2126
BspPI GGATC 6 cut(s) 18, 176, 186, 593, 1098, 2529
BspT104I TTCGAA 2 cut(s) 1415, 2355
BspT107I GGYRCC 1 cut(s) 2111
BspTI CTTAAG 1 cut(s) 2149
BspTNI GGTCTC 1 cut(s) 1034
BsrBI CCGCTC 1 cut(s) 512
BsrGI TGTACA 2 cut(s) 1662, 2022
BsrI ACTGG 4 cut(s) 12, 1881, 2124, 2633
BssECI CCNNGG 2 cut(s) 951, 1903
BssNAI GTATAC 1 cut(s) 1674
BssNI GRCGYC 1 cut(s) 2112
BssT1I CCWWGG 1 cut(s) 951
Bst1107I GTATAC 1 cut(s) 1674
Bst2UI CCWGG 2 cut(s) 1395, 1904
Bst4CI ACNGT 8 cut(s) 28, 749, 1320, 1381, 1553, 1649, 1825, 2471
Bst6I CTCTTC 4 cut(s) 296, 873, 939, 1092
BstACI GRCGYC 1 cut(s) 2112
BstAFI CTTAAG 1 cut(s) 2149
BstAUI TGTACA 2 cut(s) 1662, 2022
BstBI TTCGAA 2 cut(s) 1415, 2355
BstC8I GCNNGC 3 cut(s) 18, 97, 160
BstEII GGTNACC 1 cut(s) 814
BstENI CCTNNNNNAGG 1 cut(s) 495
BstF5I GGATG 9 cut(s) 486, 507, 692, 1242, 1861, 2020, 2136, 2321, 2601
BstH2I RGCGCY 1 cut(s) 2115
BstHHI GCGC 3 cut(s) 1683, 1966, 2114
BstMAI GTCTC 3 cut(s) 238, 598, 1034
BstMCI CGRYCG 2 cut(s) 748, 2069
BstMWI GCNNNNNNNGC 4 cut(s) 116, 1016, 2118, 2554
BstNI CCWGG 2 cut(s) 1395, 1904
BstNSI RCATGY 1 cut(s) 241
BstPI GGTNACC 1 cut(s) 814
BstSCI CCNGG 2 cut(s) 1393, 1902
BstSFI CTRYAG 1 cut(s) 2516
BstV1I GCAGC 1 cut(s) 997
BstV2I GAAGAC 2 cut(s) 93, 380
BstX2I RGATCY 4 cut(s) 168, 598, 1882, 2521
BstYI RGATCY 4 cut(s) 168, 598, 1882, 2521
BstZ17I GTATAC 1 cut(s) 1674
Bsu36I CCTNAGG 1 cut(s) 1572
BsuRI GGCC 3 cut(s) 158, 1151, 2587
BtgZI GCGATG 1 cut(s) 2572
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 9 cut(s) 486, 507, 692, 1242, 1861, 2020, 2136, 2321, 2601
BtsI GCAGTG 3 cut(s) 2486, 2513, 2578
BtsIMutI CAGTG 3 cut(s) 2486, 2513, 2578
BveI ACCTGC 1 cut(s) 2126
Cac8I GCNNGC 3 cut(s) 18, 97, 160
CaiI CAGNNNCTG 1 cut(s) 1653
CfoI GCGC 3 cut(s) 1683, 1966, 2114
Cfr13I GGNCC 2 cut(s) 738, 2586
CsiI ACCWGGT 1 cut(s) 1393
Csp6I GTAC 5 cut(s) 37, 1663, 1747, 1780, 2023
CviQI GTAC 5 cut(s) 37, 1663, 1747, 1780, 2023
DinI GGCGCC 1 cut(s) 2113
Eam1104I CTCTTC 4 cut(s) 296, 873, 939, 1092
EarI CTCTTC 4 cut(s) 296, 873, 939, 1092
Eco130I CCWWGG 1 cut(s) 951
Eco24I GRGCYC 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 1034
Eco47I GGWCC 1 cut(s) 738
Eco81I CCTNAGG 1 cut(s) 1572
Eco91I GGTNACC 1 cut(s) 814
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoO65I GGTNACC 1 cut(s) 814
EcoRI GAATTC 1 cut(s) 2351
EcoRII CCWGG 2 cut(s) 1393, 1902
EcoT14I CCWWGG 1 cut(s) 951
EcoT22I ATGCAT 2 cut(s) 1423, 2096
EcoT38I GRGCYC 1 cut(s) 480
EgeI GGCGCC 1 cut(s) 2113
EheI GGCGCC 1 cut(s) 2113
ErhI CCWWGG 1 cut(s) 951
FalI AAGNNNNNCTT 4 cut(s) 1236, 1268, 2003, 2035
FaqI GGGAC 3 cut(s) 1553, 1988, 2526
FauI CCCGC 1 cut(s) 505
FauNDI CATATG 2 cut(s) 684, 2090
FbaI TGATCA 1 cut(s) 867
FblI GTMKAC 2 cut(s) 1673, 1909
Fnu4HI GCNGC 1 cut(s) 1011
FokI GGATG 9 cut(s) 473, 514, 679, 1249, 1868, 2027, 2143, 2308, 2588
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 1 cut(s) 1011
FspBI CTAG 5 cut(s) 497, 527, 725, 1064, 2169
GlaI GCGC 3 cut(s) 1682, 1965, 2113
GluI GCNGC 1 cut(s) 1011
GsuI CTGGAG 2 cut(s) 1796, 1886
HaeII RGCGCY 1 cut(s) 2115
HaeIII GGCC 3 cut(s) 158, 1151, 2587
HapII CCGG 1 cut(s) 1643
HhaI GCGC 3 cut(s) 1683, 1966, 2114
Hin1I GRCGYC 1 cut(s) 2112
Hin6I GCGC 3 cut(s) 1681, 1964, 2112
HinP1I GCGC 3 cut(s) 1681, 1964, 2112
HincII GTYRAC 4 cut(s) 43, 2287, 2307, 2373
HindII GTYRAC 4 cut(s) 43, 2287, 2307, 2373
HpaII CCGG 1 cut(s) 1643
HphI GGTGA 9 cut(s) 64, 287, 650, 826, 1370, 1409, 1862, 1906, 2279
Hpy99I CGWCG 2 cut(s) 395, 2305
HpyAV CCTTC 7 cut(s) 266, 1336, 1422, 1921, 1954, 2242, 2396
HpyCH4III ACNGT 8 cut(s) 28, 749, 1320, 1381, 1553, 1649, 1825, 2471
HpyCH4IV ACGT 6 cut(s) 39, 81, 213, 1444, 2300, 2375
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 1016, 2118, 2554
HpySE526I ACGT 6 cut(s) 39, 81, 213, 1444, 2300, 2375
Hsp92I GRCGYC 1 cut(s) 2112
HspAI GCGC 3 cut(s) 1681, 1964, 2112
KasI GGCGCC 1 cut(s) 2111
Ksp22I TGATCA 1 cut(s) 867
LmnI GCTCC 6 cut(s) 136, 289, 483, 509, 1105, 1951
Lsp1109I GCAGC 1 cut(s) 997
LweI GCATC 2 cut(s) 121, 782
MabI ACCWGGT 1 cut(s) 1393
MaeI CTAG 5 cut(s) 497, 527, 725, 1064, 2169
MaeII ACGT 6 cut(s) 39, 81, 213, 1444, 2300, 2375
MaeIII GTNAC 4 cut(s) 814, 1547, 1698, 2465
MbiI CCGCTC 1 cut(s) 512
MfeI CAATTG 2 cut(s) 1429, 1517
MflI RGATCY 4 cut(s) 168, 598, 1882, 2521
MhlI GDGCHC 3 cut(s) 480, 796, 856
Mly113I GGCGCC 1 cut(s) 2112
MlyI GAGTC 5 cut(s) 956, 1493, 1899, 1905, 2282
MmeI TCCRAC 4 cut(s) 156, 378, 2108, 2358
Mph1103I ATGCAT 2 cut(s) 1423, 2096
MroXI GAANNNNTTC 4 cut(s) 1116, 1365, 2005, 2351
MslI CAYNNNNRTG 2 cut(s) 236, 747
MspCI CTTAAG 1 cut(s) 2149
MspI CCGG 1 cut(s) 1643
MspR9I CCNGG 2 cut(s) 1395, 1904
MunI CAATTG 2 cut(s) 1429, 1517
Mva1269I GAATGC 4 cut(s) 348, 1423, 2062, 2186
MvaI CCWGG 2 cut(s) 1395, 1904
MwoI GCNNNNNNNGC 4 cut(s) 116, 1016, 2118, 2554
NarI GGCGCC 1 cut(s) 2112
NdeI CATATG 2 cut(s) 684, 2090
NlaIV GGNNCC 3 cut(s) 479, 740, 2113
NmuCI GTSAC 2 cut(s) 814, 1698
NsiI ATGCAT 2 cut(s) 1423, 2096
NspI RCATGY 1 cut(s) 241
NspV TTCGAA 2 cut(s) 1415, 2355
OliI CACNNNNGTG 1 cut(s) 747
PaqCI CACCTGC 1 cut(s) 2126
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 4 cut(s) 348, 1423, 2062, 2186
PdmI GAANNNNTTC 4 cut(s) 1116, 1365, 2005, 2351
PfeI GAWTC 6 cut(s) 1621, 1795, 2006, 2084, 2154, 2420
PflFI GACNNNGTC 1 cut(s) 379
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 1 cut(s) 1012
PleI GAGTC 5 cut(s) 955, 1493, 1898, 1905, 2282
PluTI GGCGCC 1 cut(s) 2115
PpsI GAGTC 5 cut(s) 955, 1493, 1898, 1905, 2282
PshBI ATTAAT 1 cut(s) 1227
PsiI TTATAA 3 cut(s) 543, 1133, 1203
Psp1406I AACGTT 1 cut(s) 2375
Psp6I CCWGG 2 cut(s) 1393, 1902
PspEI GGTNACC 1 cut(s) 814
PspGI CCWGG 2 cut(s) 1393, 1902
PspN4I GGNNCC 3 cut(s) 479, 740, 2113
PspPI GGNCC 2 cut(s) 738, 2586
PstI CTGCAG 1 cut(s) 2520
PstNI CAGNNNCTG 1 cut(s) 1653
PsuI RGATCY 4 cut(s) 168, 598, 1882, 2521
PsyI GACNNNGTC 1 cut(s) 379
RsaI GTAC 5 cut(s) 38, 1664, 1748, 1781, 2024
RsaNI GTAC 5 cut(s) 37, 1663, 1747, 1780, 2023
RseI CAYNNNNRTG 2 cut(s) 236, 747
SatI GCNGC 1 cut(s) 1011
Sau96I GGNCC 2 cut(s) 738, 2586
ScaI AGTACT 1 cut(s) 1781
SchI GAGTC 5 cut(s) 956, 1493, 1899, 1905, 2282
ScrFI CCNGG 2 cut(s) 1395, 1904
SduI GDGCHC 3 cut(s) 480, 796, 856
SexAI ACCWGGT 1 cut(s) 1393
SfaNI GCATC 2 cut(s) 121, 782
SfcI CTRYAG 1 cut(s) 2516
SfoI GGCGCC 1 cut(s) 2113
SfuI TTCGAA 2 cut(s) 1415, 2355
SinI GGWCC 1 cut(s) 738
SmiMI CAYNNNNRTG 2 cut(s) 236, 747
SmlI CTYRAG 2 cut(s) 1955, 2149
SmoI CTYRAG 2 cut(s) 1955, 2149
SsiI CCGC 4 cut(s) 134, 512, 636, 2069
SspDI GGCGCC 1 cut(s) 2111
SspI AATATT 2 cut(s) 810, 896
SspMI CTAG 5 cut(s) 497, 527, 725, 1064, 2169
StyD4I CCNGG 2 cut(s) 1393, 1902
StyI CCWWGG 1 cut(s) 951
TaaI ACNGT 8 cut(s) 28, 749, 1320, 1381, 1553, 1649, 1825, 2471
TaiI ACGT 6 cut(s) 42, 84, 216, 1447, 2303, 2378
TaqI TCGA 7 cut(s) 126, 412, 699, 1415, 1469, 2046, 2355
TatI WGTACW 3 cut(s) 1662, 1779, 2022
TfiI GAWTC 6 cut(s) 1621, 1795, 2006, 2084, 2154, 2420
TscAI CASTG 3 cut(s) 2493, 2520, 2578
TseFI GTSAC 2 cut(s) 814, 1698
TseI GCWGC 1 cut(s) 1010
Tsp45I GTSAC 2 cut(s) 814, 1698
TspDTI ATGAA 4 cut(s) 1982, 2088, 2310, 2356
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 3 cut(s) 2493, 2520, 2578
Tth111I GACNNNGTC 1 cut(s) 379
Van91I CCANNNNNTGG 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 2149
VpaK11BI GGWCC 1 cut(s) 738
VspI ATTAAT 1 cut(s) 1227
XagI CCTNNNNNAGG 1 cut(s) 495
XapI RAATTY 6 cut(s) 1540, 1578, 2270, 2351, 2358, 2427
XbaI TCTAGA 1 cut(s) 2168
XceI RCATGY 1 cut(s) 241
XmiI GTMKAC 2 cut(s) 1673, 1909
XmnI GAANNNNTTC 4 cut(s) 1116, 1365, 2005, 2351
XspI CTAG 5 cut(s) 497, 527, 725, 1064, 2169
ZrmI AGTACT 1 cut(s) 1781
Zsp2I ATGCAT 2 cut(s) 1423, 2096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.