Prupe.3G089200_v2.0.a1

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000018
Physical Location & Seq
Forward (+)
6614938 .. 6618804
3867 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G089200.1

Sequence Viewer

Length: 3093 bp
ATGGCTGAAGCACTCTTTTCCGTGCTCATAGAACAATTAGCCTCAATCATCCAAAAACAAGTACAACAAGAGGTCAGACTAGTTGTGGGTGTTGAGAAAGAAGTGGCAAAACTCACCAGCAATTTCAAAACTATTGAAGTTGTGCTCAAGAATGCAGAGGAGAGGCAGGTGAAGGAGGTAGACGTGAGACAATGGCTGGAAAGGTTGAAGGATGTATCCTACGAGATGGACGACCTGTTGGACGAGTGGAGTCCTGAAATCCTAAAACAACAAATTCAGCAACAAGAAGCTGGTAATGCTGGTAGTACTAGTACTACCAAGAAGGTATGTTTCTGCGTTCCTGCCCCTTGGTTTTGTTTTGGCCAAGTCAGTCAAGTAACTCTTCGTCGTGACATTGCTGTGAAGATAAAAGAACTAAATGAAAGATTAGCTCTGATTGCTAGTGAAAGGCAAAACTATAACTTTCAATACACGAAAAGAGAAATTGAACGACAAAAAAGTTCTTCTTTCGTTGATAAGACATTTGGTCGAGTCGATGAAAAGGATAAAGTAGTAGAAAAGTTGTTGAGTGGCAGTGGTCAAGGAGGGGCGACCTGCCTTGTCATCCCTATTATAGGGATGGGAGGGATTGGCAAGACAACTCTTGCCCAACTTGCCTATAATGATGAAAAGGTTCAAGGTCATTTCCACACTAGAATATGGGTTTGTGTCTCAGATCCTTTTGATGAGATCAAAATTGCCAAAGCCATCATTGAGGGTATGAAAAAAGAGACCCCAGCTTCAAATGAGTTGCACACTCTAAAGTCCATTATACATGAGTCCGTTAAAGGCAAGAAGTTCCTTCTTGTCCTAGATGATGTGTGGAACCAAGACTATTTAAAGTGGGAACAATTAAAGCTCCCTTTACAAAATGGGGCTGTGGGTAGTAGAATATTGGTGACCACACGAAAAGAGGAAGTTGCGAGGATGGTGGGAGTATCCACTGATATGGTCAATTTGGAGGTGTTGAGTGAAGACAATTGTTGGGCATTGTTCTATCACATTGCACTGGCTGATAGAGAAAAAAATGAGTCTAATGGGTTAGAATCTATTGGTAAACAAATTGTCAAAAAGTGTAAGGGTCTGCCCCTTGCTGCAAAGGCATTAGGTGGTCTCATGCGCTACAAGAAAATGAGGAAAGAATGGGAAGACGTTTTGAATAATGAGATATGGGAGTTAGACGGGGTTGAGGAACAAGTTTTCCAACCACTATTACTAAGTTATTATGATTTGGCCCCGGCAATCAAACGTTGTCTTTTGTATTGTGTTATTTTTCCAAAAGATTATAACATTGTCAAAGATGAGTTGATTGAGTTGTGGATGTCACAAAATTATCTTAATTCAATTGGAAACAAAGAAAAAGAAGCGGTAGGCGAAATGTACTTTGATAACTTAGTAATGCGCTCTTTCTTTCAAGAATTTGAGAAAGATAATCTTGGTAATATAACGGGGTGCAAGATGCATGATGTTGTGCATGACTTTCTACAATTTCTAACTAAGAATGAATGCTTAGTTTTGGAGGCTGAGGATGGTAACAATAAGAGAATAATGGAGTTTGATGGATATAAGAAGGTTCGTCATTTGACATTAATGTTTGCACCCAACGGTCCACTAATTCCAAGTTCCTTGTGCAACTGCAAGAATTTATGGACTCTTGCAACTTTTGATTCAAAGATTACTAGTTTTGGTCGAGAGTTAATTTCACAAGTAAAATGCCTTAGAATGTTGAATTTGAGTCATAACTCCTTGAAAGAAGTTCCAAATAAGGTTGGAGAATTGGCACATTTGAGGTATCTTGATTTGTCTTATAATCATGATTTGATGAAATTGCCAGACACTAATTTAATCAATCTGCAAACCTTGAGACTCATTTACTGCTGGGCACTTGAAATATTACCTGAAGGCATGGGAAAGCTGATTAACTTGCAGCATCTTCATGTTATGGGTTGTGTTGATCTAAAATTGCCCAAGGGGATTGCAAGGTTAAAAAGTCTACGAATGCTAGACGTAGTTTACATCCACGGCAACGATGACGTTGATAACAACAAAGAAGCATTATTCGAGTTAAGTGATTTGAGAAACATGGACCAGCTTCGTGGGAGTTTTTGTATTTGGTTTGGTACGGATCTAAAGGACGTGAGGCAGGCCGAGAAAGGGCATTTGGTGAACAAAAATTGCCTTGTCAGTCTGAAATTGAGTTTCTTCTCTGACACGTGGCAGCCCAAACCCATCCAGGAAGAAACAATGAATGCCTTACAACCACCTCCAAATCTGGAATCCTTATTTATTGAAGGCTACTGTGGCACCACACTTCGGCCCCATTGGATGACGTCGTTAAACAAATTGAGAAGCCTTACCCTTCAATATTGCCACTTCGTTGAGTGTGTGCCTCCTTTGGGGAGATTGGAGTCCCTTGAAGTACTAGTGATATACAAATGGCCTCGCGTGAAAAAGGTAGGAGTTGAGTTTTTGGGAATAGATGGAACAATAGAAACGCAAACATCCTCATCACCACTGATTTTATTCCCAAATTTGAAAACACTTTTATTCGACTCTTTGTATACTTGGGAAGAGTGGGAAGGAATGACAGGGTGGAGTGAAGAAGGGGATTCTCAGAATACAATTACAATAATGCCCTGCCTTTCTTCCTTACTAATTTATGATTGCGGAGTACTAAGAACGCTGCCCAACTTCTTACGAAATACACCACTGAAGAAGTTGGTCATCGATGAGAACTACTATCCAACACTTGCACAAGGTTGCCGAAAAGAAGGAGGAGAGTGGCCCAAGATTTCTCACATCCCAAACATCAAAGTTGGTAAAGAATTTGTACAAAAAGACGGAGTTTACCAAATTGATGATGATGAGATGCCAAGTGTTGCTTCCACATCTTCTTCTGGTATTAAAAAATTTCTCAAAAATTGTCTCGGGCTAGGCCTGGCCCTACCTGGCCAGGCCTTGATCCGTGCCAACGACCCCCATTTCCAAATTCTAGCCGTTGAAGGTATTTTCTGGCATGCAAAGAGGAAAGTCTCATTTGAATTCACACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1031

Amino Acids

117.5

Weight (kDa)

6.14

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1326, 1848
AarI CACCTGC 1 cut(s) 157
AatII GACGTC 1 cut(s) 2372
Acc36I ACCTGC 2 cut(s) 157, 602
AccB1I GGYRCC 1 cut(s) 2342
AccI GTMKAC 3 cut(s) 180, 2032, 2600
AccII CGCG 1 cut(s) 2484
AciI CCGC 2 cut(s) 1406, 2706
AclI AACGTT 1 cut(s) 1288
AclWI GGATC 3 cut(s) 710, 2172, 2995
AcoI YGGCCR 2 cut(s) 361, 2989
AcsI RAATTY 9 cut(s) 273, 1457, 1681, 1768, 2569, 2864, 2948, 3027, 3080
AcuI CTGAAG 3 cut(s) 27, 1959, 2771
AcvI CACGTG 1 cut(s) 2253
AcyI GRCGYC 1 cut(s) 2369
AfaI GTAC 8 cut(s) 63, 307, 313, 1421, 2161, 2460, 2712, 2871
AfiI CCNNNNNNNGG 4 cut(s) 614, 2193, 2352, 2435
AflIII ACRYGT 1 cut(s) 2250
AhdI GACNNNNNGTC 1 cut(s) 525
AhlI ACTAGT 4 cut(s) 79, 308, 1718, 2461
AjiI CACGTC 2 cut(s) 184, 2176
AjnI CCWGG 4 cut(s) 2271, 2976, 2986, 2991
AjuI GAANNNNNNNTTGG 4 cut(s) 2183, 2215, 2905, 2937
AloI GAACNNNNNNTCC 2 cut(s) 1224, 1256
AluBI AGCT 6 cut(s) 290, 431, 779, 898, 1954, 2131
AluI AGCT 6 cut(s) 290, 431, 779, 898, 1954, 2131
Alw21I GWGCWC 2 cut(s) 27, 147
Alw26I GTCTC 7 cut(s) 181, 715, 764, 1157, 1897, 2969, 3076
AlwI GGATC 3 cut(s) 710, 2172, 2995
Ama87I CYCGRG 1 cut(s) 2966
ApeKI GCWGC 4 cut(s) 1133, 1966, 2257, 2722
ApoI RAATTY 9 cut(s) 273, 1457, 1681, 1768, 2569, 2864, 2948, 3027, 3080
AseI ATTAAT 1 cut(s) 1628
Asp700I GAANNNNTTC 1 cut(s) 672
AspLEI GCGC 2 cut(s) 1161, 1443
AspS9I GGNCC 6 cut(s) 1273, 1646, 2125, 2355, 2823, 2980
AsuC2I CCSGG 1 cut(s) 1277
AsuHPI GGTGA 5 cut(s) 106, 181, 949, 2215, 2541
AvaI CYCGRG 1 cut(s) 2966
AvaII GGWCC 2 cut(s) 1646, 2125
BaeGI GKGCMC 1 cut(s) 1924
BalI TGGCCA 2 cut(s) 363, 2991
BanI GGYRCC 1 cut(s) 2342
BbrPI CACGTG 1 cut(s) 2253
BbsI GAAGAC 2 cut(s) 1020, 1194
Bbv12I GWGCWC 2 cut(s) 27, 147
BbvCI CCTCAGC 1 cut(s) 1563
BbvI GCAGC 4 cut(s) 1120, 1978, 2269, 2709
BccI CCATC 8 cut(s) 220, 613, 755, 961, 1562, 1592, 2276, 2513
BceAI ACGGC 2 cut(s) 2077, 3020
BciT130I CCWGG 4 cut(s) 2273, 2978, 2988, 2993
BciVI GTATCC 2 cut(s) 226, 988
BcnI CCSGG 1 cut(s) 1277
BcoDI GTCTC 7 cut(s) 181, 715, 764, 1157, 1897, 2969, 3076
BcuI ACTAGT 4 cut(s) 79, 308, 1718, 2461
BfuAI ACCTGC 2 cut(s) 157, 602
BfuI GTATCC 2 cut(s) 226, 988
BisI GCNGC 4 cut(s) 1134, 1967, 2258, 2723
BlsI GCNGC 4 cut(s) 1135, 1968, 2259, 2724
BmcAI AGTACT 4 cut(s) 307, 313, 2460, 2712
Bme1390I CCNGG 5 cut(s) 1277, 2273, 2978, 2988, 2993
Bme18I GGWCC 2 cut(s) 1646, 2125
BmeRI GACNNNNNGTC 1 cut(s) 525
BmeT110I CYCGRG 1 cut(s) 2966
BmgBI CACGTC 2 cut(s) 184, 2176
BmgT120I GGNCC 6 cut(s) 1273, 1646, 2125, 2355, 2823, 2980
BmiI GGNNCC 4 cut(s) 866, 1275, 2344, 2357
BmrFI CCNGG 5 cut(s) 1277, 2273, 2978, 2988, 2993
BmsI GCATC 3 cut(s) 1488, 1978, 2898
BpiI GAAGAC 2 cut(s) 1020, 1194
Bpu10I CCTNAGC 1 cut(s) 1563
BpuEI CTTGAG 2 cut(s) 131, 1921
BpuMI CCSGG 1 cut(s) 1277
Bsa29I ATCGAT 1 cut(s) 2766
BsaAI YACGTR 1 cut(s) 2253
BsaHI GRCGYC 1 cut(s) 2369
BsaI GGTCTC 2 cut(s) 764, 1157
BsaJI CCNNGG 4 cut(s) 347, 1275, 2007, 2059
BsaXI ACNNNNNCTCC 2 cut(s) 2131, 2161
Bsc4I CCNNNNNNNGG 4 cut(s) 614, 2193, 2352, 2435
Bse1I ACTGG 1 cut(s) 1053
Bse3DI GCAATG 2 cut(s) 393, 1041
BseBI CCWGG 4 cut(s) 2273, 2978, 2988, 2993
BseCI ATCGAT 1 cut(s) 2766
BseDI CCNNGG 4 cut(s) 347, 1275, 2007, 2059
BseLI CCNNNNNNNGG 4 cut(s) 614, 2193, 2352, 2435
BseMI GCAATG 2 cut(s) 393, 1041
BseMII CTCAG 3 cut(s) 726, 1554, 2666
BseNI ACTGG 1 cut(s) 1053
BseRI GAGGAG 2 cut(s) 173, 2829
BseSI GKGCMC 1 cut(s) 1924
BseXI GCAGC 4 cut(s) 1120, 1978, 2269, 2709
BseYI CCCAGC 2 cut(s) 775, 1917
Bsh1236I CGCG 1 cut(s) 2484
BshNI GGYRCC 1 cut(s) 2342
BshVI ATCGAT 1 cut(s) 2766
BsiHKAI GWGCWC 2 cut(s) 27, 147
BsiHKCI CYCGRG 1 cut(s) 2966
BsiSI CCGG 1 cut(s) 1277
BslFI GGGAC 1 cut(s) 2434
BslI CCNNNNNNNGG 4 cut(s) 614, 2193, 2352, 2435
BsmAI GTCTC 7 cut(s) 181, 715, 764, 1157, 1897, 2969, 3076
BsmFI GGGAC 1 cut(s) 2434
BsmI GAATGC 4 cut(s) 157, 1550, 2043, 2293
Bso31I GGTCTC 2 cut(s) 764, 1157
BsoBI CYCGRG 1 cut(s) 2966
Bsp1286I GDGCHC 3 cut(s) 27, 147, 1924
Bsp1407I TGTACA 1 cut(s) 2869
Bsp143I GATC 5 cut(s) 715, 729, 1993, 2164, 3000
BspACI CCGC 2 cut(s) 1406, 2706
BspCNI CTCAG 3 cut(s) 725, 1555, 2665
BspDI ATCGAT 1 cut(s) 2766
BspFNI CGCG 1 cut(s) 2484
BspHI TCATGA 1 cut(s) 1852
BspLI GGNNCC 4 cut(s) 866, 1275, 2344, 2357
BspMI ACCTGC 2 cut(s) 157, 602
BspPI GGATC 3 cut(s) 710, 2172, 2995
BspT107I GGYRCC 1 cut(s) 2342
BspTNI GGTCTC 2 cut(s) 764, 1157
BsrDI GCAATG 2 cut(s) 393, 1041
BsrGI TGTACA 1 cut(s) 2869
BsrI ACTGG 1 cut(s) 1053
BssECI CCNNGG 4 cut(s) 347, 1275, 2007, 2059
BssMI GATC 5 cut(s) 715, 729, 1993, 2164, 3000
BssNAI GTATAC 1 cut(s) 2601
BssNI GRCGYC 1 cut(s) 2369
BssT1I CCWWGG 2 cut(s) 347, 2007
Bst1107I GTATAC 1 cut(s) 2601
Bst2UI CCWGG 4 cut(s) 2273, 2978, 2988, 2993
Bst4CI ACNGT 2 cut(s) 1646, 2339
Bst6I CTCTTC 2 cut(s) 387, 2604
BstACI GRCGYC 1 cut(s) 2369
BstAUI TGTACA 1 cut(s) 2869
BstBAI YACGTR 1 cut(s) 2253
BstC8I GCNNGC 2 cut(s) 2184, 3057
BstDEI CTNAG 9 cut(s) 712, 1256, 1432, 1536, 1549, 1563, 1757, 2652, 2714
BstDSI CCRYGG 1 cut(s) 2059
BstEII GGTNACC 1 cut(s) 937
BstENI CCTNNNNNAGG 1 cut(s) 612
BstFNI CGCG 1 cut(s) 2484
BstHHI GCGC 2 cut(s) 1161, 1443
BstKTI GATC 5 cut(s) 718, 732, 1996, 2167, 3003
BstMAI GTCTC 7 cut(s) 181, 715, 764, 1157, 1897, 2969, 3076
BstMBI GATC 5 cut(s) 715, 729, 1993, 2164, 3000
BstMWI GCNNNNNNNGC 5 cut(s) 296, 437, 653, 1139, 2340
BstNI CCWGG 4 cut(s) 2273, 2978, 2988, 2993
BstNSI RCATGY 1 cut(s) 3059
BstPI GGTNACC 1 cut(s) 937
BstSCI CCNGG 5 cut(s) 1275, 2271, 2976, 2986, 2991
BstSLI GKGCMC 1 cut(s) 1924
BstUI CGCG 1 cut(s) 2484
BstV1I GCAGC 4 cut(s) 1120, 1978, 2269, 2709
BstV2I GAAGAC 2 cut(s) 1020, 1194
BstX2I RGATCY 2 cut(s) 715, 2164
BstXI CCANNNNNNTGG 2 cut(s) 988, 2135
BstYI RGATCY 2 cut(s) 715, 2164
BstZ17I GTATAC 1 cut(s) 2601
Bsu15I ATCGAT 1 cut(s) 2766
BsuI GTATCC 2 cut(s) 226, 988
BsuTUI ATCGAT 1 cut(s) 2766
BtgI CCRYGG 1 cut(s) 2059
BtrI CACGTC 2 cut(s) 184, 2176
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 5 cut(s) 580, 981, 1046, 2552, 2747
BveI ACCTGC 2 cut(s) 157, 602
Cac8I GCNNGC 2 cut(s) 2184, 3057
CciI TCATGA 1 cut(s) 1852
CfoI GCGC 2 cut(s) 1161, 1443
Cfr13I GGNCC 6 cut(s) 1273, 1646, 2125, 2355, 2823, 2980
ClaI ATCGAT 1 cut(s) 2766
Csp6I GTAC 8 cut(s) 62, 306, 312, 1420, 2160, 2459, 2711, 2870
CviAII CATG 9 cut(s) 815, 1156, 1502, 1514, 1853, 1945, 1976, 2122, 3056
CviQI GTAC 8 cut(s) 62, 306, 312, 1420, 2160, 2459, 2711, 2870
DdeI CTNAG 9 cut(s) 712, 1256, 1432, 1536, 1549, 1563, 1757, 2652, 2714
DpnI GATC 5 cut(s) 717, 731, 1995, 2166, 3002
DpnII GATC 5 cut(s) 715, 729, 1993, 2164, 3000
DraI TTTAAA 1 cut(s) 879
DriI GACNNNNNGTC 1 cut(s) 525
EaeI YGGCCR 2 cut(s) 361, 2989
Eam1104I CTCTTC 2 cut(s) 387, 2604
Eam1105I GACNNNNNGTC 1 cut(s) 525
EarI CTCTTC 2 cut(s) 387, 2604
Eco130I CCWWGG 2 cut(s) 347, 2007
Eco147I AGGCCT 2 cut(s) 2976, 2996
Eco31I GGTCTC 2 cut(s) 764, 1157
Eco47I GGWCC 2 cut(s) 1646, 2125
Eco57I CTGAAG 3 cut(s) 27, 1959, 2771
Eco72I CACGTG 1 cut(s) 2253
Eco88I CYCGRG 1 cut(s) 2966
Eco91I GGTNACC 1 cut(s) 937
EcoNI CCTNNNNNAGG 1 cut(s) 612
EcoO65I GGTNACC 1 cut(s) 937
EcoRI GAATTC 1 cut(s) 3080
EcoRII CCWGG 4 cut(s) 2271, 2976, 2986, 2991
EcoT14I CCWWGG 2 cut(s) 347, 2007
EcoT22I ATGCAT 1 cut(s) 1503
ErhI CCWWGG 2 cut(s) 347, 2007
FaeI CATG 9 cut(s) 818, 1159, 1505, 1517, 1856, 1948, 1979, 2125, 3059
FalI AAGNNNNNCTT 8 cut(s) 366, 398, 490, 522, 1458, 1490, 2905, 2937
FaqI GGGAC 1 cut(s) 2434
FatI CATG 9 cut(s) 814, 1155, 1501, 1513, 1852, 1944, 1975, 2121, 3055
FblI GTMKAC 3 cut(s) 180, 2032, 2600
Fnu4HI GCNGC 4 cut(s) 1134, 1967, 2258, 2723
Fsp4HI GCNGC 4 cut(s) 1134, 1967, 2258, 2723
GlaI GCGC 2 cut(s) 1160, 1442
GluI GCNGC 4 cut(s) 1134, 1967, 2258, 2723
GsaI CCCAGC 2 cut(s) 779, 1921
HapII CCGG 1 cut(s) 1277
HhaI GCGC 2 cut(s) 1161, 1443
Hin1I GRCGYC 1 cut(s) 2369
Hin1II CATG 9 cut(s) 818, 1159, 1505, 1517, 1856, 1948, 1979, 2125, 3059
Hin6I GCGC 2 cut(s) 1159, 1441
HinP1I GCGC 2 cut(s) 1159, 1441
HpaII CCGG 1 cut(s) 1277
HphI GGTGA 5 cut(s) 106, 181, 949, 2215, 2541
Hpy166II GTNNAC 8 cut(s) 181, 1097, 1649, 2033, 2053, 2206, 2601, 2887
Hpy188I TCNGA 6 cut(s) 77, 435, 715, 2229, 2248, 2655
Hpy188III TCNNGA 8 cut(s) 148, 254, 389, 1454, 1730, 1835, 1853, 2312
Hpy8I GTNNAC 8 cut(s) 181, 1097, 1649, 2033, 2053, 2206, 2601, 2887
Hpy99I CGWCG 2 cut(s) 390, 2374
HpyCH4III ACNGT 2 cut(s) 1646, 2339
HpyCH4IV ACGT 8 cut(s) 183, 1191, 1288, 2046, 2073, 2175, 2252, 2369
HpyF10VI GCNNNNNNNGC 5 cut(s) 296, 437, 653, 1139, 2340
HpyF3I CTNAG 9 cut(s) 712, 1256, 1432, 1536, 1549, 1563, 1757, 2652, 2714
HpySE526I ACGT 8 cut(s) 183, 1191, 1288, 2046, 2073, 2175, 2252, 2369
Hsp92I GRCGYC 1 cut(s) 2369
Hsp92II CATG 9 cut(s) 818, 1159, 1505, 1517, 1856, 1948, 1979, 2125, 3059
HspAI GCGC 2 cut(s) 1159, 1441
Kzo9I GATC 5 cut(s) 715, 729, 1993, 2164, 3000
LmnI GCTCC 1 cut(s) 903
Lsp1109I GCAGC 4 cut(s) 1120, 1978, 2269, 2709
LweI GCATC 3 cut(s) 1488, 1978, 2898
MaeII ACGT 8 cut(s) 183, 1191, 1288, 2046, 2073, 2175, 2252, 2369
MaeIII GTNAC 5 cut(s) 376, 389, 937, 1362, 1571
MalI GATC 5 cut(s) 717, 731, 1995, 2166, 3002
MboI GATC 5 cut(s) 715, 729, 1993, 2164, 3000
MfeI CAATTG 2 cut(s) 1018, 1383
MflI RGATCY 2 cut(s) 715, 2164
MhlI GDGCHC 3 cut(s) 27, 147, 1924
MlsI TGGCCA 2 cut(s) 363, 2991
MluNI TGGCCA 2 cut(s) 363, 2991
MlyI GAGTC 9 cut(s) 259, 540, 827, 1079, 1684, 1783, 1899, 2456, 2585
MmeI TCCRAC 4 cut(s) 219, 1267, 1789, 2807
Mox20I TGGCCA 2 cut(s) 363, 2991
Mph1103I ATGCAT 1 cut(s) 1503
MroXI GAANNNNTTC 1 cut(s) 672
MscI TGGCCA 2 cut(s) 363, 2991
MslI CAYNNNNRTG 3 cut(s) 398, 986, 1974
Msp20I TGGCCA 2 cut(s) 363, 2991
MspI CCGG 1 cut(s) 1277
MspR9I CCNGG 5 cut(s) 1277, 2273, 2978, 2988, 2993
MunI CAATTG 2 cut(s) 1018, 1383
Mva1269I GAATGC 4 cut(s) 157, 1550, 2043, 2293
MvaI CCWGG 4 cut(s) 2273, 2978, 2988, 2993
MvnI CGCG 1 cut(s) 2484
MwoI GCNNNNNNNGC 5 cut(s) 296, 437, 653, 1139, 2340
NciI CCSGG 1 cut(s) 1277
NdeII GATC 5 cut(s) 715, 729, 1993, 2164, 3000
NlaIII CATG 9 cut(s) 818, 1159, 1505, 1517, 1856, 1948, 1979, 2125, 3059
NlaIV GGNNCC 4 cut(s) 866, 1275, 2344, 2357
NmeAIII GCCGAG 1 cut(s) 2212
NmuCI GTSAC 3 cut(s) 389, 937, 1362
NsiI ATGCAT 1 cut(s) 1503
NspI RCATGY 1 cut(s) 3059
PaeI GCATGC 1 cut(s) 3059
PagI TCATGA 1 cut(s) 1852
PaqCI CACCTGC 1 cut(s) 157
PceI AGGCCT 2 cut(s) 2976, 2996
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 4 cut(s) 157, 1550, 2043, 2293
PdmI GAANNNNTTC 1 cut(s) 672
PfeI GAWTC 4 cut(s) 1085, 1706, 2315, 2648
PfoI TCCNGGA 1 cut(s) 2271
PkrI GCNGC 4 cut(s) 1135, 1968, 2259, 2724
PleI GAGTC 9 cut(s) 258, 539, 826, 1078, 1684, 1782, 1899, 2455, 2585
PmaCI CACGTG 1 cut(s) 2253
PmlI CACGTG 1 cut(s) 2253
PpsI GAGTC 9 cut(s) 258, 539, 826, 1078, 1684, 1782, 1899, 2455, 2585
Ppu21I YACGTR 1 cut(s) 2253
PshBI ATTAAT 1 cut(s) 1628
PsiI TTATAA 2 cut(s) 1326, 1848
Psp1406I AACGTT 1 cut(s) 1288
Psp6I CCWGG 4 cut(s) 2271, 2976, 2986, 2991
PspCI CACGTG 1 cut(s) 2253
PspEI GGTNACC 1 cut(s) 937
PspFI CCCAGC 2 cut(s) 775, 1917
PspGI CCWGG 4 cut(s) 2271, 2976, 2986, 2991
PspN4I GGNNCC 4 cut(s) 866, 1275, 2344, 2357
PspPI GGNCC 6 cut(s) 1273, 1646, 2125, 2355, 2823, 2980
PsuI RGATCY 2 cut(s) 715, 2164
RsaI GTAC 8 cut(s) 63, 307, 313, 1421, 2161, 2460, 2712, 2871
RsaNI GTAC 8 cut(s) 62, 306, 312, 1420, 2160, 2459, 2711, 2870
RseI CAYNNNNRTG 3 cut(s) 398, 986, 1974
SatI GCNGC 4 cut(s) 1134, 1967, 2258, 2723
Sau3AI GATC 5 cut(s) 715, 729, 1993, 2164, 3000
Sau96I GGNCC 6 cut(s) 1273, 1646, 2125, 2355, 2823, 2980
ScaI AGTACT 4 cut(s) 307, 313, 2460, 2712
SchI GAGTC 9 cut(s) 259, 540, 827, 1079, 1684, 1783, 1899, 2456, 2585
ScrFI CCNGG 5 cut(s) 1277, 2273, 2978, 2988, 2993
SduI GDGCHC 3 cut(s) 27, 147, 1924
SfaNI GCATC 3 cut(s) 1488, 1978, 2898
SinI GGWCC 2 cut(s) 1646, 2125
SmiMI CAYNNNNRTG 3 cut(s) 398, 986, 1974
SmlI CTYRAG 2 cut(s) 146, 1900
SmoI CTYRAG 2 cut(s) 146, 1900
SpeI ACTAGT 4 cut(s) 79, 308, 1718, 2461
SphI GCATGC 1 cut(s) 3059
SseBI AGGCCT 2 cut(s) 2976, 2996
SsiI CCGC 2 cut(s) 1406, 2706
SspI AATATT 3 cut(s) 933, 1932, 2405
StuI AGGCCT 2 cut(s) 2976, 2996
StyD4I CCNGG 5 cut(s) 1275, 2271, 2976, 2986, 2991
StyI CCWWGG 2 cut(s) 347, 2007
TaaI ACNGT 2 cut(s) 1646, 2339
TaiI ACGT 8 cut(s) 186, 1194, 1291, 2049, 2076, 2178, 2255, 2372
TaqI TCGA 6 cut(s) 529, 534, 1729, 2100, 2589, 2766
TatI WGTACW 7 cut(s) 61, 305, 311, 1419, 2458, 2710, 2869
TfiI GAWTC 4 cut(s) 1085, 1706, 2315, 2648
TscAI CASTG 5 cut(s) 580, 988, 1053, 2559, 2754
TseFI GTSAC 3 cut(s) 389, 937, 1362
TseI GCWGC 4 cut(s) 1133, 1966, 2257, 2722
Tsp45I GTSAC 3 cut(s) 389, 937, 1362
TspDTI ATGAA 8 cut(s) 435, 552, 681, 776, 1557, 1877, 1964, 2300
TspGWI ACGGA 5 cut(s) 10, 811, 2177, 2895, 2993
TspRI CASTG 5 cut(s) 580, 988, 1053, 2559, 2754
VpaK11BI GGWCC 2 cut(s) 1646, 2125
VspI ATTAAT 1 cut(s) 1628
XagI CCTNNNNNAGG 1 cut(s) 612
XapI RAATTY 9 cut(s) 273, 1457, 1681, 1768, 2569, 2864, 2948, 3027, 3080
XceI RCATGY 1 cut(s) 3059
XmiI GTMKAC 3 cut(s) 180, 2032, 2600
XmnI GAANNNNTTC 1 cut(s) 672
ZraI GACGTC 1 cut(s) 2370
ZrmI AGTACT 4 cut(s) 307, 313, 2460, 2712
Zsp2I ATGCAT 1 cut(s) 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.