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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 41 |
| AcoI | YGGCCR | 1 cut(s) | 9 |
| AfaI | GTAC | 2 cut(s) | 40, 68 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 41, 152, 253 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 120, 152 |
| AluBI | AGCT | 3 cut(s) | 47, 52, 346 |
| AluI | AGCT | 3 cut(s) | 47, 52, 346 |
| Alw21I | GWGCWC | 1 cut(s) | 49 |
| Alw26I | GTCTC | 1 cut(s) | 196 |
| AoxI | GGCC | 2 cut(s) | 9, 226 |
| ApeKI | GCWGC | 2 cut(s) | 250, 396 |
| AspS9I | GGNCC | 1 cut(s) | 170 |
| AsuHPI | GGTGA | 1 cut(s) | 400 |
| AvaII | GGWCC | 1 cut(s) | 170 |
| BanII | GRGCYC | 1 cut(s) | 49 |
| Bbv12I | GWGCWC | 1 cut(s) | 49 |
| BbvI | GCAGC | 2 cut(s) | 237, 408 |
| BccI | CCATC | 2 cut(s) | 119, 196 |
| BcoDI | GTCTC | 1 cut(s) | 196 |
| BisI | GCNGC | 2 cut(s) | 251, 397 |
| BlpI | GCTNAGC | 1 cut(s) | 48 |
| BlsI | GCNGC | 2 cut(s) | 252, 398 |
| Bme18I | GGWCC | 1 cut(s) | 170 |
| BmgT120I | GGNCC | 1 cut(s) | 170 |
| BmsI | GCATC | 2 cut(s) | 383, 408 |
| BpmI | CTGGAG | 2 cut(s) | 63, 351 |
| Bpu10I | CCTNAGC | 1 cut(s) | 314 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 48 |
| BpuEI | CTTGAG | 1 cut(s) | 409 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 41, 152, 253 |
| Bse118I | RCCGGY | 2 cut(s) | 11, 145 |
| Bse1I | ACTGG | 1 cut(s) | 46 |
| BseGI | GGATG | 3 cut(s) | 10, 207, 298 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 41, 152, 253 |
| BseMII | CTCAG | 2 cut(s) | 62, 188 |
| BseNI | ACTGG | 1 cut(s) | 46 |
| BseXI | GCAGC | 2 cut(s) | 237, 408 |
| BshFI | GGCC | 2 cut(s) | 11, 228 |
| BsiHKAI | GWGCWC | 1 cut(s) | 49 |
| BsiSI | CCGG | 2 cut(s) | 12, 146 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 41, 152, 253 |
| BsmAI | GTCTC | 1 cut(s) | 196 |
| BsmBI | CGTCTC | 1 cut(s) | 196 |
| BsmI | GAATGC | 2 cut(s) | 283, 325 |
| BsnI | GGCC | 2 cut(s) | 11, 228 |
| Bsp1286I | GDGCHC | 1 cut(s) | 49 |
| Bsp143I | GATC | 1 cut(s) | 241 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 48 |
| BspANI | GGCC | 2 cut(s) | 11, 228 |
| BspCNI | CTCAG | 2 cut(s) | 61, 187 |
| BsrFI | RCCGGY | 2 cut(s) | 11, 145 |
| BsrI | ACTGG | 1 cut(s) | 46 |
| BssAI | RCCGGY | 2 cut(s) | 11, 145 |
| BssMI | GATC | 1 cut(s) | 241 |
| BstC8I | GCNNGC | 2 cut(s) | 115, 248 |
| BstDEI | CTNAG | 4 cut(s) | 48, 63, 174, 314 |
| BstF5I | GGATG | 3 cut(s) | 10, 207, 298 |
| BstKTI | GATC | 1 cut(s) | 244 |
| BstMAI | GTCTC | 1 cut(s) | 196 |
| BstMBI | GATC | 1 cut(s) | 241 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 278 |
| BstNSI | RCATGY | 3 cut(s) | 113, 117, 239 |
| BstV1I | GCAGC | 2 cut(s) | 237, 408 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 125 |
| BsuRI | GGCC | 2 cut(s) | 11, 228 |
| BtgZI | GCGATG | 1 cut(s) | 287 |
| BtsCI | GGATG | 3 cut(s) | 10, 207, 298 |
| Cac8I | GCNNGC | 2 cut(s) | 115, 248 |
| Cfr10I | RCCGGY | 2 cut(s) | 11, 145 |
| Cfr13I | GGNCC | 1 cut(s) | 170 |
| Csp6I | GTAC | 2 cut(s) | 39, 67 |
| CviAII | CATG | 4 cut(s) | 36, 110, 114, 236 |
| CviJI | RGCY | 7 cut(s) | 11, 34, 47, 52, 92, 228, 346 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 34, 47, 52, 92, 228, 346 |
| CviQI | GTAC | 2 cut(s) | 39, 67 |
| DdeI | CTNAG | 4 cut(s) | 48, 63, 174, 314 |
| DpnI | GATC | 1 cut(s) | 243 |
| DpnII | GATC | 1 cut(s) | 241 |
| EaeI | YGGCCR | 1 cut(s) | 9 |
| Ecl136II | GAGCTC | 1 cut(s) | 47 |
| Eco24I | GRGCYC | 1 cut(s) | 49 |
| Eco47I | GGWCC | 1 cut(s) | 170 |
| Eco53kI | GAGCTC | 1 cut(s) | 47 |
| EcoICRI | GAGCTC | 1 cut(s) | 47 |
| EcoO109I | RGGNCCY | 1 cut(s) | 170 |
| EcoT22I | ATGCAT | 1 cut(s) | 115 |
| EcoT38I | GRGCYC | 1 cut(s) | 49 |
| Esp3I | CGTCTC | 1 cut(s) | 196 |
| FaeI | CATG | 4 cut(s) | 39, 113, 117, 239 |
| FaiI | YATR | 9 cut(s) | 26, 37, 111, 115, 141, 211, 213, 237, 306 |
| FatI | CATG | 4 cut(s) | 35, 109, 113, 235 |
| FauNDI | CATATG | 1 cut(s) | 211 |
| Fnu4HI | GCNGC | 2 cut(s) | 251, 397 |
| FokI | GGATG | 3 cut(s) | 17, 214, 305 |
| FriOI | GRGCYC | 1 cut(s) | 49 |
| Fsp4HI | GCNGC | 2 cut(s) | 251, 397 |
| GluI | GCNGC | 2 cut(s) | 251, 397 |
| GsuI | CTGGAG | 2 cut(s) | 63, 351 |
| HaeIII | GGCC | 2 cut(s) | 11, 228 |
| HapII | CCGG | 2 cut(s) | 12, 146 |
| Hin1II | CATG | 4 cut(s) | 39, 113, 117, 239 |
| HinfI | GANTC | 1 cut(s) | 156 |
| HpaII | CCGG | 2 cut(s) | 12, 146 |
| HphI | GGTGA | 1 cut(s) | 400 |
| Hpy166II | GTNNAC | 1 cut(s) | 341 |
| Hpy188I | TCNGA | 1 cut(s) | 177 |
| Hpy188III | TCNNGA | 3 cut(s) | 160, 168, 330 |
| Hpy8I | GTNNAC | 1 cut(s) | 341 |
| HpyAV | CCTTC | 1 cut(s) | 313 |
| HpyCH4V | TGCA | 6 cut(s) | 106, 113, 209, 239, 325, 396 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 278 |
| HpyF3I | CTNAG | 4 cut(s) | 48, 63, 174, 314 |
| Hsp92II | CATG | 4 cut(s) | 39, 113, 117, 239 |
| Kzo9I | GATC | 1 cut(s) | 241 |
| LmnI | GCTCC | 1 cut(s) | 44 |
| LpnPI | CCDG | 8 cut(s) | 25, 27, 145, 153, 159, 239, 260, 315 |
| Lsp1109I | GCAGC | 2 cut(s) | 237, 408 |
| LweI | GCATC | 2 cut(s) | 383, 408 |
| MalI | GATC | 1 cut(s) | 243 |
| MboI | GATC | 1 cut(s) | 241 |
| MhlI | GDGCHC | 1 cut(s) | 49 |
| MluCI | AATT | 2 cut(s) | 119, 222 |
| MnlI | CCTC | 8 cut(s) | 70, 127, 183, 239, 283, 326, 421, 425 |
| Mph1103I | ATGCAT | 1 cut(s) | 115 |
| MseI | TTAA | 1 cut(s) | 263 |
| MspI | CCGG | 2 cut(s) | 12, 146 |
| Mva1269I | GAATGC | 2 cut(s) | 283, 325 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 278 |
| NdeI | CATATG | 1 cut(s) | 211 |
| NdeII | GATC | 1 cut(s) | 241 |
| NlaIII | CATG | 4 cut(s) | 39, 113, 117, 239 |
| NsiI | ATGCAT | 1 cut(s) | 115 |
| NspI | RCATGY | 3 cut(s) | 113, 117, 239 |
| PaeI | GCATGC | 1 cut(s) | 117 |
| PctI | GAATGC | 2 cut(s) | 283, 325 |
| PfeI | GAWTC | 1 cut(s) | 156 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 41 |
| PkrI | GCNGC | 2 cut(s) | 252, 398 |
| PpuMI | RGGWCCY | 1 cut(s) | 170 |
| Psp124BI | GAGCTC | 1 cut(s) | 49 |
| Psp5II | RGGWCCY | 1 cut(s) | 170 |
| PspPI | GGNCC | 1 cut(s) | 170 |
| PspPPI | RGGWCCY | 1 cut(s) | 170 |
| RsaI | GTAC | 2 cut(s) | 40, 68 |
| RsaNI | GTAC | 2 cut(s) | 39, 67 |
| SacI | GAGCTC | 1 cut(s) | 49 |
| SaqAI | TTAA | 1 cut(s) | 263 |
| SatI | GCNGC | 2 cut(s) | 251, 397 |
| Sau3AI | GATC | 1 cut(s) | 241 |
| Sau96I | GGNCC | 1 cut(s) | 170 |
| SduI | GDGCHC | 1 cut(s) | 49 |
| SetI | ASST | 9 cut(s) | 49, 54, 138, 175, 182, 270, 324, 348, 413 |
| SfaNI | GCATC | 2 cut(s) | 383, 408 |
| SinI | GGWCC | 1 cut(s) | 170 |
| SmlI | CTYRAG | 1 cut(s) | 388 |
| SmoI | CTYRAG | 1 cut(s) | 388 |
| SphI | GCATGC | 1 cut(s) | 117 |
| Sse9I | AATT | 2 cut(s) | 119, 222 |
| SstI | GAGCTC | 1 cut(s) | 49 |
| TasI | AATT | 2 cut(s) | 119, 222 |
| TatI | WGTACW | 2 cut(s) | 38, 66 |
| TfiI | GAWTC | 1 cut(s) | 156 |
| Tru1I | TTAA | 1 cut(s) | 263 |
| Tru9I | TTAA | 1 cut(s) | 263 |
| TseI | GCWGC | 2 cut(s) | 250, 396 |
| TspDTI | ATGAA | 2 cut(s) | 128, 290 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 41 |
| VpaK11BI | GGWCC | 1 cut(s) | 170 |
| XceI | RCATGY | 3 cut(s) | 113, 117, 239 |
| Zsp2I | ATGCAT | 1 cut(s) | 115 |