RchiOBHm_Chr7g0229571

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000018
Physical Location & Seq
Forward (+)
53123362 .. 53134067
10706 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20565

Sequence Viewer

Length: 2907 bp
ATGGCTGAGGCACTCATCTCTGTACTTCTGGAGCAATTGGCTTCAGTAGTATATCAACACACAAATGAAGTGGTGAAACTGGTTTTGAATGCTGACAAAGATGTTAAAAGTTTCAGCAGCAACCTCAAAGCTATCCAGGCTGTGCTTGAGGATGCAGAGAAGAAGCAAGTGACGGAGGTCAGCGTAGGCGACTGGTTGGAGAAGCTGAAAGATGTATCGTACGAGATGGACGACGTGCTAGACGAGTGGAACACTGAACTTCTCAGACAACAAGTGGAGGAGAAGCAAGTGGTAGAAGGAGATAATGCTCTTGTTACCAAGAAGAAGGTATGTTTCCCCATGCCCTCTGGTTGCTTTTGTTTTGGCCAAGTCAATAAGGCCATTCATCATCATAACATTGCTAGAAGGATAAAGGAACTGAATGAGAAGTTAACTTTGATTGCTGCTGAAAAAGCCATGTATGGCTTTCATCAATCCACAATAGGTGGCCATGATGACCAACAGCTTATTCAACGGCAGATAACTTCATCTTTGGTCGATATATCTACGATATTCGGCCGAGAAGAAGAAAAAGAGTATTTGTTGAGCAACTTGTTAAGAGAGAGTAACCAGGATGGGGGGAGTAGCCAAGAAGGCAAGCGGTTCCTTGTCATCCCTATTGTAGGGATGGGAGGGATGGGGAAAACCACTCTTGCCCAATTAGCCTATAACAATGAAAATGTTACAGCTCATTTTGATAAGAAAGTTTGGGTTTGTGTCTCGGATCCTTTTGATGAGATTAAGATTGCTAAAGCGATCATTGAAAATCTAGATGGAACCCAAAGCAGTTTGAATGAGTTGGAAATTTTATTGCAGCATATCAAGACACGTGTTGAGAATAAGAAGTTACTCATGGTTCTAGATGATGTGTGGACGGAAGAACATAAAAAGTGGGAAAATTTGAAACTACAAGTGATAATGCAACGTTGTGCTAAGGGCAGTAAAATACTGGTGACCACACGAAAAGAAGGGGTTGCTAAAATGATGAGAGCAACCAGCAGCATGATCCATTTGGACAAGTTGAATGATACGGATTGTCTAGCATTGTTCAATAGCTTTGCATTTTTGGATAGGGAAGAAGATGAGGCTAATGGGTTTGGAGCTATTGGTGAGGAAATTGTGAAAAAGTGTAAAGGTTTGCCTCTTGCTGCAAAGACTTTAGGTAGTCTAGTGTGGTATAAGAAAACAAGAGAGGAATGGCGGGATGTTCTGAATAGTAAGATATGGGAACTAGAAGAAGTTGAGGAACAAGTTTTCCGACCATTGTTACTAAGTTATTATGATTTGGTTCCTGCAGTCAAAAGGTGTCTTTTGTATTGTGCAATATTTCCCAAAGATTATGACTTCCAAAAAGATGATTTGATTGAGCTTTGGATGTCACAAGATTATCTTAATTCAAAGGGAAAAAAAGAAAAGAGAAGAATAGGTCAAAATTATTTTGAGAGTCTAGCAATGCGGTCTTTCTTTCAAGATTTTATAAAAGATATCATGGGAAATATTAGAGGGTGCAAAATGCATGATATAGTGCATGACTTTGTGCAGTTTCTTACCCAAAAGGAATGCACTATTATAGAAGCAGTCAAGGGTGCTAATCAAAGAGTGGAGCTACCAGGTGATTATAAGGTTCGTCATTTGACTTTAACAAGTTTACCCGAAGGTCCACTTTCATTTCCTACTTCATTTGACAAGTGCAAAAATATGCGAACCCTCACACTCCTTGATTCAAGCATTACAGCCATAAGCCCGGGTTCAATTATGCAAATGAAATGCCTCAGGACATTGAATGTGAGTCGTAGCGAGCTCAATGAAGTTCCTAAAGAGATTGGTGAATTGATTCATTTGAGATATATGGATTTGTCTTGGAGTCGTAATTTGAAAGAATTACCGGATGCTGTGTGTGATTTATACAATCTACAAACTCTGGACGTTTCGTGGTGTGGTAAACTAGAGAAATTACCCAAGGCAATGGAAAAGTTGATTAACTTGAAGCATCTATATGTTGGGGGTTGTATTGAGCTGAGGTACTTACCGAAAGGGATTGGGAGTCTGAAGAGTCTGCAAGTACTGGACTACTTTTATGCATGTGAGGGTGATGATGAAGCATTGAAATTAGGAGATCTCGGAATCATGGCCCAGCTTCAGGGGAGCCTTTCTATAATATATTTGGGGAAAAATGATGCGAATGAGATTGAGAAGATTGAGAAAGCACAGTTGGGGAATAAGGAGCACCTCTCTCATTTGGGAGTATGGTTCCAGGAAGGAGATGAAGAGCAGAGAAAAGGCGATGCAGAAATAGTGAAAGCATTGCAACCACATCACAATTTGGAATCTCTTTCTATTGGGTGTTGCCAAATTGGCACCACCGAGTCTCTCTATTGGATCAAGTCTCTACACAATTTGAGAGAACTTCGTCTCTATGACTGGCGATTTTGTGAACTTTTGCCTCCTCTTGGAAAATTGCCATCGCTTGAAATTCTGGAGATAGAGGGGATGAAGAAAGTGAAAACGGTGGGAGTTGTATTTCTGAGAATAGAAGAAGAAGAAGAAGAAGAACAAGTCTCAGGAATTCTATTCCCCAAATTGAAACAACTTACTTTCAGATCGATGTACAACTGGGAAGAGTGGGCCTTTCTTTCTGAAATCACAATAATATTAATGCCACGCCTTTCTGAGTTGCAAATTGATGGGTGCCCAAAGCTAAAAGCACTGCCAGAGTTCCTGTACAAGATAACAGCACTGCGTACTTTGGAGATCTGGGCTTGTCCAATTCTGGAAGGAGAATACGAAAAAGACGTGGGGAAGGAGTGGCACAACATTTCTCACATCCCAAACCTCACAATCCAATCTGGAAGGAAGAAGAGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

968

Amino Acids

110.83

Weight (kDa)

5.68

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 97 1.4e-20 Rx N-terminal domain
NB-ARC PF00931 213 - 369 6.3e-34 NB-ARC domain
WHD_DRP PF23559 455 - 526 1.4e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 580 - 907 2.1e-32 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 718 - 844 1.5e-22 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1517, 1659
AccB1I GGYRCC 2 cut(s) 2396, 2727
AciI CCGC 3 cut(s) 640, 1240, 1495
AclI AACGTT 1 cut(s) 964
AclWI GGATC 4 cut(s) 758, 771, 1039, 2426
AcoI YGGCCR 3 cut(s) 364, 487, 556
AcsI RAATTY 4 cut(s) 843, 937, 2511, 2604
AcuI CTGAAG 3 cut(s) 27, 2108, 2162
AcvI CACGTG 1 cut(s) 869
AfaI GTAC 7 cut(s) 24, 221, 2063, 2103, 2648, 2762, 2782
AfiI CCNNNNNNNGG 4 cut(s) 616, 662, 2179, 2489
AflIII ACRYGT 2 cut(s) 866, 868
AjiI CACGTC 2 cut(s) 235, 2833
AjnI CCWGG 4 cut(s) 135, 609, 1648, 2292
AjuI GAANNNNNNNTTGG 4 cut(s) 492, 524, 2234, 2266
AloI GAACNNNNNNTCC 2 cut(s) 1278, 1310
Alw21I GWGCWC 2 cut(s) 1842, 2268
Alw26I GTCTC 6 cut(s) 763, 2412, 2430, 2456, 2602, 2893
AlwI GGATC 4 cut(s) 758, 771, 1039, 2426
Ama87I CYCGRG 1 cut(s) 1783
AoxI GGCC 6 cut(s) 364, 378, 487, 556, 2169, 2664
ApeKI GCWGC 5 cut(s) 117, 443, 853, 1038, 1187
ApoI RAATTY 4 cut(s) 843, 937, 2511, 2604
AseI ATTAAT 1 cut(s) 2693
Asp700I GAANNNNTTC 1 cut(s) 1872
AspS9I GGNCC 3 cut(s) 1697, 2170, 2664
AsuC2I CCSGG 2 cut(s) 1784, 1785
AsuHPI GGTGA 6 cut(s) 85, 1003, 1160, 1664, 1877, 2141
AvaI CYCGRG 1 cut(s) 1783
AvaII GGWCC 1 cut(s) 1697
AxyI CCTNAGG 1 cut(s) 1811
BaeGI GKGCMC 1 cut(s) 2732
BalI TGGCCA 2 cut(s) 366, 489
BamHI GGATCC 1 cut(s) 763
BanI GGYRCC 2 cut(s) 2396, 2727
BanII GRGCYC 1 cut(s) 1842
BbrPI CACGTG 1 cut(s) 869
Bbv12I GWGCWC 2 cut(s) 1842, 2268
BbvCI CCTCAGC 2 cut(s) 6, 2057
BbvI GCAGC 5 cut(s) 129, 430, 865, 1050, 1174
BccI CCATC 7 cut(s) 220, 608, 661, 670, 806, 2509, 2717
BceAI ACGGC 1 cut(s) 530
BciT130I CCWGG 4 cut(s) 137, 611, 1650, 2294
BcnI CCSGG 2 cut(s) 1784, 1785
BcoDI GTCTC 6 cut(s) 763, 2412, 2430, 2456, 2602, 2893
BfaI CTAG 9 cut(s) 239, 402, 809, 899, 1079, 1208, 1271, 1487, 1985
BfmI CTRYAG 1 cut(s) 1332
BglI GCCNNNNNGGC 2 cut(s) 633, 2394
BglII AGATCT 2 cut(s) 2155, 2790
BisI GCNGC 5 cut(s) 118, 444, 854, 1039, 1188
BlsI GCNGC 5 cut(s) 119, 445, 855, 1040, 1189
BmcAI AGTACT 1 cut(s) 2103
Bme1390I CCNGG 6 cut(s) 137, 611, 1650, 1784, 1785, 2294
Bme18I GGWCC 1 cut(s) 1697
BmeT110I CYCGRG 1 cut(s) 1783
BmgBI CACGTC 2 cut(s) 235, 2833
BmgT120I GGNCC 3 cut(s) 1697, 2170, 2664
BmiI GGNNCC 8 cut(s) 644, 765, 817, 1329, 2186, 2291, 2398, 2729
BmrFI CCNGG 6 cut(s) 137, 611, 1650, 1784, 1785, 2294
BmrI ACTGGG 1 cut(s) 2662
BmsI GCATC 5 cut(s) 142, 1918, 2038, 2206, 2314
BmuI ACTGGG 1 cut(s) 2662
BoxI GACNNNNGTC 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 2255, 2287
BpmI CTGGAG 2 cut(s) 50, 2537
Bpu10I CCTNAGC 3 cut(s) 6, 972, 2057
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 2 cut(s) 1784, 1785
Bsa29I ATCGAT 1 cut(s) 2642
BsaAI YACGTR 1 cut(s) 869
BsaJI CCNNGG 2 cut(s) 1783, 1998
BsaWI WCCGGW 1 cut(s) 1924
Bsc4I CCNNNNNNNGG 4 cut(s) 616, 662, 2179, 2489
Bse1I ACTGG 6 cut(s) 84, 197, 993, 2109, 2465, 2657
Bse21I CCTNAGG 1 cut(s) 1811
Bse3DI GCAATG 4 cut(s) 396, 1497, 2010, 2342
BseBI CCWGG 4 cut(s) 137, 611, 1650, 2294
BseCI ATCGAT 1 cut(s) 2642
BseDI CCNNGG 2 cut(s) 1783, 1998
BseLI CCNNNNNNNGG 4 cut(s) 616, 662, 2179, 2489
BseMI GCAATG 4 cut(s) 396, 1497, 2010, 2342
BseMII CTCAG 6 cut(s) 277, 1825, 2048, 2555, 2613, 2700
BseNI ACTGG 6 cut(s) 84, 197, 993, 2109, 2465, 2657
BseRI GAGGAG 2 cut(s) 293, 2475
BseSI GKGCMC 1 cut(s) 2732
BseX3I CGGCCG 1 cut(s) 556
BseXI GCAGC 5 cut(s) 129, 430, 865, 1050, 1174
BseYI CCCAGC 1 cut(s) 2172
BsgI GTGCAG 1 cut(s) 1598
Bsh1285I CGRYCG 1 cut(s) 559
BshFI GGCC 6 cut(s) 366, 380, 489, 558, 2171, 2666
BshNI GGYRCC 2 cut(s) 2396, 2727
BshVI ATCGAT 1 cut(s) 2642
BsiEI CGRYCG 1 cut(s) 559
BsiHKAI GWGCWC 2 cut(s) 1842, 2268
BsiHKCI CYCGRG 1 cut(s) 1783
BsiSI CCGG 2 cut(s) 1784, 1925
BsiWI CGTACG 1 cut(s) 219
BslI CCNNNNNNNGG 4 cut(s) 616, 662, 2179, 2489
BsmAI GTCTC 6 cut(s) 763, 2412, 2430, 2456, 2602, 2893
BsmBI CGTCTC 1 cut(s) 2456
BsmI GAATGC 2 cut(s) 94, 1604
BsnI GGCC 6 cut(s) 366, 380, 489, 558, 2171, 2666
BsoBI CYCGRG 1 cut(s) 1783
Bsp1286I GDGCHC 3 cut(s) 1842, 2268, 2732
Bsp1407I TGTACA 2 cut(s) 2646, 2760
Bsp143I GATC 7 cut(s) 763, 795, 1044, 2155, 2418, 2639, 2790
BspACI CCGC 3 cut(s) 640, 1240, 1495
BspANI GGCC 6 cut(s) 366, 380, 489, 558, 2171, 2666
BspCNI CTCAG 6 cut(s) 276, 1824, 2049, 2556, 2612, 2701
BspDI ATCGAT 1 cut(s) 2642
BspLI GGNNCC 8 cut(s) 644, 765, 817, 1329, 2186, 2291, 2398, 2729
BspMAI CTGCAG 1 cut(s) 1336
BspPI GGATC 4 cut(s) 758, 771, 1039, 2426
BspQI GCTCTTC 1 cut(s) 2301
BspT107I GGYRCC 2 cut(s) 2396, 2727
BsrDI GCAATG 4 cut(s) 396, 1497, 2010, 2342
BsrGI TGTACA 2 cut(s) 2646, 2760
BsrI ACTGG 6 cut(s) 84, 197, 993, 2109, 2465, 2657
BssECI CCNNGG 2 cut(s) 1783, 1998
BssMI GATC 7 cut(s) 763, 795, 1044, 2155, 2418, 2639, 2790
BssT1I CCWWGG 1 cut(s) 1998
Bst2UI CCWGG 4 cut(s) 137, 611, 1650, 2294
Bst4CI ACNGT 2 cut(s) 2250, 2548
Bst6I CTCTTC 4 cut(s) 2084, 2301, 2652, 2891
BstAUI TGTACA 2 cut(s) 2646, 2760
BstBAI YACGTR 1 cut(s) 869
BstC8I GCNNGC 2 cut(s) 638, 1838
BstDEI CTNAG 9 cut(s) 6, 263, 972, 1310, 1811, 2057, 2564, 2599, 2709
BstEII GGTNACC 1 cut(s) 991
BstENI CCTNNNNNAGG 1 cut(s) 660
BstKTI GATC 7 cut(s) 766, 798, 1047, 2158, 2421, 2642, 2793
BstMAI GTCTC 6 cut(s) 763, 2412, 2430, 2456, 2602, 2893
BstMBI GATC 7 cut(s) 763, 795, 1044, 2155, 2418, 2639, 2790
BstMCI CGRYCG 1 cut(s) 559
BstMWI GCNNNNNNNGC 5 cut(s) 137, 452, 633, 701, 2394
BstNI CCWGG 4 cut(s) 137, 611, 1650, 2294
BstNSI RCATGY 1 cut(s) 2124
BstPAI GACNNNNGTC 1 cut(s) 176
BstPI GGTNACC 1 cut(s) 991
BstSCI CCNGG 6 cut(s) 135, 609, 1648, 1782, 1783, 2292
BstSFI CTRYAG 1 cut(s) 1332
BstSLI GKGCMC 1 cut(s) 2732
BstV1I GCAGC 5 cut(s) 129, 430, 865, 1050, 1174
BstX2I RGATCY 3 cut(s) 763, 2155, 2790
BstXI CCANNNNNNTGG 1 cut(s) 2005
BstYI RGATCY 3 cut(s) 763, 2155, 2790
BstZI CGGCCG 1 cut(s) 556
Bsu15I ATCGAT 1 cut(s) 2642
Bsu36I CCTNAGG 1 cut(s) 1811
BsuRI GGCC 6 cut(s) 366, 380, 489, 558, 2171, 2666
BsuTUI ATCGAT 1 cut(s) 2642
BtgZI GCGATG 2 cut(s) 2337, 2487
BtrI CACGTC 2 cut(s) 235, 2833
BtsI GCAGTG 2 cut(s) 2744, 2774
BtsIMutI CAGTG 3 cut(s) 252, 2744, 2774
Cac8I GCNNGC 2 cut(s) 638, 1838
Cfr13I GGNCC 3 cut(s) 1697, 2170, 2664
Cfr9I CCCGGG 1 cut(s) 1783
ClaI ATCGAT 1 cut(s) 2642
CsiI ACCWGGT 1 cut(s) 1648
Csp6I GTAC 7 cut(s) 23, 220, 2062, 2102, 2647, 2761, 2781
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviQI GTAC 7 cut(s) 23, 220, 2062, 2102, 2647, 2761, 2781
DdeI CTNAG 9 cut(s) 6, 263, 972, 1310, 1811, 2057, 2564, 2599, 2709
DpnI GATC 7 cut(s) 765, 797, 1046, 2157, 2420, 2641, 2792
DpnII GATC 7 cut(s) 763, 795, 1044, 2155, 2418, 2639, 2790
EaeI YGGCCR 3 cut(s) 364, 487, 556
EagI CGGCCG 1 cut(s) 556
Eam1104I CTCTTC 4 cut(s) 2084, 2301, 2652, 2891
EarI CTCTTC 4 cut(s) 2084, 2301, 2652, 2891
Ecl136II GAGCTC 1 cut(s) 1840
EclXI CGGCCG 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 1998
Eco24I GRGCYC 1 cut(s) 1842
Eco32I GATATC 1 cut(s) 1525
Eco47I GGWCC 1 cut(s) 1697
Eco52I CGGCCG 1 cut(s) 556
Eco53kI GAGCTC 1 cut(s) 1840
Eco57I CTGAAG 3 cut(s) 27, 2108, 2162
Eco72I CACGTG 1 cut(s) 869
Eco81I CCTNAGG 1 cut(s) 1811
Eco88I CYCGRG 1 cut(s) 1783
Eco91I GGTNACC 1 cut(s) 991
EcoICRI GAGCTC 1 cut(s) 1840
EcoNI CCTNNNNNAGG 1 cut(s) 660
EcoO65I GGTNACC 1 cut(s) 991
EcoRI GAATTC 1 cut(s) 2604
EcoRII CCWGG 4 cut(s) 135, 609, 1648, 2292
EcoRV GATATC 1 cut(s) 1525
EcoT14I CCWWGG 1 cut(s) 1998
EcoT22I ATGCAT 2 cut(s) 1557, 2122
EcoT38I GRGCYC 1 cut(s) 1842
ErhI CCWWGG 1 cut(s) 1998
Esp3I CGTCTC 1 cut(s) 2456
FalI AAGNNNNNCTT 4 cut(s) 1413, 1445, 1686, 1718
FauI CCCGC 1 cut(s) 1233
Fnu4HI GCNGC 5 cut(s) 118, 444, 854, 1039, 1188
FriOI GRGCYC 1 cut(s) 1842
Fsp4HI GCNGC 5 cut(s) 118, 444, 854, 1039, 1188
FspBI CTAG 9 cut(s) 239, 402, 809, 899, 1079, 1208, 1271, 1487, 1985
GluI GCNGC 5 cut(s) 118, 444, 854, 1039, 1188
GsaI CCCAGC 1 cut(s) 2176
GsuI CTGGAG 2 cut(s) 50, 2537
HaeIII GGCC 6 cut(s) 366, 380, 489, 558, 2171, 2666
HapII CCGG 2 cut(s) 1784, 1925
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HpaI GTTAAC 1 cut(s) 432
HpaII CCGG 2 cut(s) 1784, 1925
HphI GGTGA 6 cut(s) 85, 1003, 1160, 1664, 1877, 2141
Hpy166II GTNNAC 6 cut(s) 432, 912, 1688, 1700, 1982, 2474
Hpy8I GTNNAC 6 cut(s) 432, 912, 1688, 1700, 1982, 2474
Hpy99I CGWCG 1 cut(s) 236
HpyCH4III ACNGT 2 cut(s) 2250, 2548
HpyCH4IV ACGT 5 cut(s) 234, 868, 964, 1965, 2832
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 452, 633, 701, 2394
HpyF3I CTNAG 9 cut(s) 6, 263, 972, 1310, 1811, 2057, 2564, 2599, 2709
HpySE526I ACGT 5 cut(s) 234, 868, 964, 1965, 2832
KspAI GTTAAC 1 cut(s) 432
Kzo9I GATC 7 cut(s) 763, 795, 1044, 2155, 2418, 2639, 2790
LguI GCTCTTC 1 cut(s) 2301
LmnI GCTCC 5 cut(s) 31, 1139, 1642, 2184, 2263
Lsp1109I GCAGC 5 cut(s) 129, 430, 865, 1050, 1174
LweI GCATC 5 cut(s) 142, 1918, 2038, 2206, 2314
MabI ACCWGGT 1 cut(s) 1648
MaeI CTAG 9 cut(s) 239, 402, 809, 899, 1079, 1208, 1271, 1487, 1985
MaeII ACGT 5 cut(s) 234, 868, 964, 1965, 2832
MaeIII GTNAC 8 cut(s) 169, 313, 605, 721, 885, 991, 1305, 1416
MalI GATC 7 cut(s) 765, 797, 1046, 2157, 2420, 2641, 2792
MboI GATC 7 cut(s) 763, 795, 1044, 2155, 2418, 2639, 2790
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 3 cut(s) 763, 2155, 2790
MhlI GDGCHC 3 cut(s) 1842, 2268, 2732
MlsI TGGCCA 2 cut(s) 366, 489
MluNI TGGCCA 2 cut(s) 366, 489
MlyI GAGTC 6 cut(s) 1492, 1837, 1912, 2092, 2101, 2414
MmeI TCCRAC 3 cut(s) 177, 819, 1321
Mox20I TGGCCA 2 cut(s) 366, 489
Mph1103I ATGCAT 2 cut(s) 1557, 2122
MroXI GAANNNNTTC 1 cut(s) 1872
MscI TGGCCA 2 cut(s) 366, 489
MseI TTAA 8 cut(s) 105, 431, 596, 780, 1431, 1679, 2019, 2693
MslI CAYNNNNRTG 2 cut(s) 63, 2034
Msp20I TGGCCA 2 cut(s) 366, 489
MspI CCGG 2 cut(s) 1784, 1925
MspR9I CCNGG 6 cut(s) 137, 611, 1650, 1784, 1785, 2294
MunI CAATTG 1 cut(s) 35
Mva1269I GAATGC 2 cut(s) 94, 1604
MvaI CCWGG 4 cut(s) 137, 611, 1650, 2294
MwoI GCNNNNNNNGC 5 cut(s) 137, 452, 633, 701, 2394
NciI CCSGG 2 cut(s) 1784, 1785
NdeII GATC 7 cut(s) 763, 795, 1044, 2155, 2418, 2639, 2790
NlaIV GGNNCC 8 cut(s) 644, 765, 817, 1329, 2186, 2291, 2398, 2729
NmeAIII GCCGAG 1 cut(s) 584
NmuCI GTSAC 3 cut(s) 169, 991, 1416
NsiI ATGCAT 2 cut(s) 1557, 2122
NspI RCATGY 1 cut(s) 2124
PciSI GCTCTTC 1 cut(s) 2301
PcsI WCGNNNNNNNCGW 3 cut(s) 228, 240, 2829
PctI GAATGC 2 cut(s) 94, 1604
PdmI GAANNNNTTC 1 cut(s) 1872
PfeI GAWTC 4 cut(s) 1760, 1873, 2163, 2366
Pfl23II CGTACG 1 cut(s) 219
PfoI TCCNGGA 1 cut(s) 2292
PkrI GCNGC 5 cut(s) 119, 445, 855, 1040, 1189
PleI GAGTC 6 cut(s) 1491, 1836, 1911, 2091, 2100, 2413
PmaCI CACGTG 1 cut(s) 869
PmlI CACGTG 1 cut(s) 869
PpsI GAGTC 6 cut(s) 1491, 1836, 1911, 2091, 2100, 2413
Ppu21I YACGTR 1 cut(s) 869
PshAI GACNNNNGTC 1 cut(s) 176
PshBI ATTAAT 1 cut(s) 2693
PsiI TTATAA 2 cut(s) 1517, 1659
Psp124BI GAGCTC 1 cut(s) 1842
Psp1406I AACGTT 1 cut(s) 964
Psp6I CCWGG 4 cut(s) 135, 609, 1648, 2292
PspCI CACGTG 1 cut(s) 869
PspEI GGTNACC 1 cut(s) 991
PspFI CCCAGC 1 cut(s) 2172
PspGI CCWGG 4 cut(s) 135, 609, 1648, 2292
PspLI CGTACG 1 cut(s) 219
PspN4I GGNNCC 8 cut(s) 644, 765, 817, 1329, 2186, 2291, 2398, 2729
PspPI GGNCC 3 cut(s) 1697, 2170, 2664
PstI CTGCAG 1 cut(s) 1336
PsuI RGATCY 3 cut(s) 763, 2155, 2790
RsaI GTAC 7 cut(s) 24, 221, 2063, 2103, 2648, 2762, 2782
RsaNI GTAC 7 cut(s) 23, 220, 2062, 2102, 2647, 2761, 2781
RseI CAYNNNNRTG 2 cut(s) 63, 2034
SacI GAGCTC 1 cut(s) 1842
SapI GCTCTTC 1 cut(s) 2301
SaqAI TTAA 8 cut(s) 105, 431, 596, 780, 1431, 1679, 2019, 2693
SatI GCNGC 5 cut(s) 118, 444, 854, 1039, 1188
Sau3AI GATC 7 cut(s) 763, 795, 1044, 2155, 2418, 2639, 2790
Sau96I GGNCC 3 cut(s) 1697, 2170, 2664
ScaI AGTACT 1 cut(s) 2103
SchI GAGTC 6 cut(s) 1492, 1837, 1912, 2092, 2101, 2414
ScrFI CCNGG 6 cut(s) 137, 611, 1650, 1784, 1785, 2294
SduI GDGCHC 3 cut(s) 1842, 2268, 2732
SexAI ACCWGGT 1 cut(s) 1648
SfaNI GCATC 5 cut(s) 142, 1918, 2038, 2206, 2314
SfcI CTRYAG 1 cut(s) 1332
SinI GGWCC 1 cut(s) 1697
SmaI CCCGGG 1 cut(s) 1785
SmiMI CAYNNNNRTG 2 cut(s) 63, 2034
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SsiI CCGC 3 cut(s) 640, 1240, 1495
SspI AATATT 3 cut(s) 1365, 1537, 2691
SspMI CTAG 9 cut(s) 239, 402, 809, 899, 1079, 1208, 1271, 1487, 1985
SstI GAGCTC 1 cut(s) 1842
StyD4I CCNGG 6 cut(s) 135, 609, 1648, 1782, 1783, 2292
StyI CCWWGG 1 cut(s) 1998
TaaI ACNGT 2 cut(s) 2250, 2548
TaiI ACGT 5 cut(s) 237, 871, 967, 1968, 2835
TaqI TCGA 2 cut(s) 537, 2642
TatI WGTACW 4 cut(s) 22, 2101, 2646, 2760
TfiI GAWTC 4 cut(s) 1760, 1873, 2163, 2366
Tru1I TTAA 8 cut(s) 105, 431, 596, 780, 1431, 1679, 2019, 2693
Tru9I TTAA 8 cut(s) 105, 431, 596, 780, 1431, 1679, 2019, 2693
TscAI CASTG 3 cut(s) 259, 2751, 2781
TseFI GTSAC 3 cut(s) 169, 991, 1416
TseI GCWGC 5 cut(s) 117, 443, 853, 1038, 1187
Tsp45I GTSAC 3 cut(s) 169, 991, 1416
TspGWI ACGGA 3 cut(s) 188, 929, 1085
TspMI CCCGGG 1 cut(s) 1783
TspRI CASTG 3 cut(s) 259, 2751, 2781
VpaK11BI GGWCC 1 cut(s) 1697
VspI ATTAAT 1 cut(s) 2693
XagI CCTNNNNNAGG 1 cut(s) 660
XapI RAATTY 4 cut(s) 843, 937, 2511, 2604
XbaI TCTAGA 2 cut(s) 808, 898
XceI RCATGY 1 cut(s) 2124
XmaI CCCGGG 1 cut(s) 1783
XmnI GAANNNNTTC 1 cut(s) 1872
XspI CTAG 9 cut(s) 239, 402, 809, 899, 1079, 1208, 1271, 1487, 1985
ZrmI AGTACT 1 cut(s) 2103
Zsp2I ATGCAT 2 cut(s) 1557, 2122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.