disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep-A_N | PF04057 | 5 - 106 | 7.6e-27 | Replication factor-A protein 1, N-terminal domain |
| tRNA_anti-codon | PF01336 | 298 - 381 | 1.6e-10 | OB-fold nucleic acid binding domain |
| REPA_OB_2 | PF16900 | 407 - 509 | 7e-24 | Replication protein A OB domain |
| Rep_fac-A_C | PF08646 | 567 - 716 | 1.1e-49 | Replication factor-A C terminal domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1730, 1802 |
| AarI | CACCTGC | 1 cut(s) | 269 |
| Acc36I | ACCTGC | 2 cut(s) | 269, 1019 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 560, 593, 2585 |
| AccBSI | CCGCTC | 2 cut(s) | 1765, 1780 |
| AccII | CGCG | 2 cut(s) | 125, 266 |
| AclWI | GGATC | 2 cut(s) | 94, 1709 |
| AcoI | YGGCCR | 2 cut(s) | 186, 1214 |
| AcsI | RAATTY | 8 cut(s) | 661, 709, 861, 999, 1106, 1134, 1585, 2042 |
| AcuI | CTGAAG | 3 cut(s) | 53, 1849, 2241 |
| AcvI | CACGTG | 1 cut(s) | 950 |
| AdeI | CACNNNGTG | 1 cut(s) | 953 |
| AfaI | GTAC | 5 cut(s) | 532, 858, 2278, 2328, 2413 |
| AfeI | AGCGCT | 1 cut(s) | 137 |
| AflIII | ACRYGT | 2 cut(s) | 323, 2329 |
| AhlI | ACTAGT | 1 cut(s) | 1511 |
| AjiI | CACGTC | 2 cut(s) | 7, 91 |
| AjnI | CCWGG | 8 cut(s) | 204, 382, 508, 639, 844, 1607, 2455, 2536 |
| Alw21I | GWGCWC | 5 cut(s) | 87, 415, 871, 2234, 2314 |
| Alw26I | GTCTC | 5 cut(s) | 304, 551, 1313, 1603, 2066 |
| AlwI | GGATC | 2 cut(s) | 94, 1709 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 560 |
| Aor51HI | AGCGCT | 1 cut(s) | 137 |
| AoxI | GGCC | 7 cut(s) | 68, 147, 186, 277, 1214, 2452, 2492 |
| ApeKI | GCWGC | 5 cut(s) | 627, 1094, 1198, 2089, 2285 |
| ApoI | RAATTY | 8 cut(s) | 661, 709, 861, 999, 1106, 1134, 1585, 2042 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 350, 382 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1585 |
| AspA2I | CCTAGG | 1 cut(s) | 2354 |
| AspLEI | GCGC | 4 cut(s) | 125, 138, 266, 268 |
| AspS9I | GGNCC | 6 cut(s) | 69, 162, 821, 933, 1500, 2453 |
| AsuC2I | CCSGG | 1 cut(s) | 2607 |
| AsuHPI | GGTGA | 8 cut(s) | 212, 536, 965, 1328, 1567, 1949, 2522, 2525 |
| AsuII | TTCGAA | 1 cut(s) | 356 |
| AsuNHI | GCTAGC | 1 cut(s) | 1450 |
| AvaII | GGWCC | 4 cut(s) | 162, 821, 933, 1500 |
| AvrII | CCTAGG | 1 cut(s) | 2354 |
| AxyI | CCTNAGG | 1 cut(s) | 729 |
| BaeGI | GKGCMC | 1 cut(s) | 2544 |
| BalI | TGGCCA | 1 cut(s) | 188 |
| BanII | GRGCYC | 3 cut(s) | 236, 1533, 2234 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 505, 537 |
| BauI | CACGAG | 1 cut(s) | 414 |
| BbrPI | CACGTG | 1 cut(s) | 950 |
| Bbv12I | GWGCWC | 5 cut(s) | 87, 415, 871, 2234, 2314 |
| BbvCI | CCTCAGC | 2 cut(s) | 681, 777 |
| BbvI | GCAGC | 5 cut(s) | 639, 1106, 1210, 2101, 2272 |
| BccI | CCATC | 8 cut(s) | 80, 152, 1175, 1802, 1808, 1942, 2158, 2580 |
| BceAI | ACGGC | 1 cut(s) | 930 |
| BciT130I | CCWGG | 8 cut(s) | 206, 384, 510, 641, 846, 1609, 2457, 2538 |
| BciVI | GTATCC | 1 cut(s) | 2397 |
| BcnI | CCSGG | 1 cut(s) | 2607 |
| BcoDI | GTCTC | 5 cut(s) | 304, 551, 1313, 1603, 2066 |
| BcuI | ACTAGT | 1 cut(s) | 1511 |
| BfmI | CTRYAG | 1 cut(s) | 139 |
| BfoI | RGCGCY | 1 cut(s) | 139 |
| BfuAI | ACCTGC | 2 cut(s) | 269, 1019 |
| BfuI | GTATCC | 1 cut(s) | 2397 |
| BglII | AGATCT | 1 cut(s) | 2158 |
| BlnI | CCTAGG | 1 cut(s) | 2354 |
| BlpI | GCTNAGC | 1 cut(s) | 672 |
| Bme1390I | CCNGG | 9 cut(s) | 206, 384, 510, 641, 846, 1609, 2457, 2538, 2607 |
| Bme18I | GGWCC | 4 cut(s) | 162, 821, 933, 1500 |
| BmgBI | CACGTC | 2 cut(s) | 7, 91 |
| BmgT120I | GGNCC | 6 cut(s) | 69, 162, 821, 933, 1500, 2453 |
| BmiI | GGNNCC | 6 cut(s) | 163, 164, 235, 645, 1501, 2361 |
| BmrFI | CCNGG | 9 cut(s) | 206, 384, 510, 641, 846, 1609, 2457, 2538, 2607 |
| BmrI | ACTGGG | 1 cut(s) | 2554 |
| BmsI | GCATC | 1 cut(s) | 171 |
| BmtI | GCTAGC | 1 cut(s) | 1454 |
| BmuI | ACTGGG | 1 cut(s) | 2554 |
| BpmI | CTGGAG | 3 cut(s) | 209, 1322, 1591 |
| Bpu10I | CCTNAGC | 2 cut(s) | 681, 777 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 672 |
| Bpu14I | TTCGAA | 1 cut(s) | 356 |
| BpuEI | CTTGAG | 2 cut(s) | 1527, 1751 |
| BpuMI | CCSGG | 1 cut(s) | 2607 |
| Bsa29I | ATCGAT | 1 cut(s) | 877 |
| BsaAI | YACGTR | 1 cut(s) | 950 |
| BsaJI | CCNNGG | 8 cut(s) | 274, 508, 639, 1503, 1608, 2354, 2455, 2537 |
| Bse118I | RCCGGY | 1 cut(s) | 2369 |
| Bse21I | CCTNAGG | 1 cut(s) | 729 |
| Bse3DI | GCAATG | 2 cut(s) | 1402, 1790 |
| BseBI | CCWGG | 8 cut(s) | 206, 384, 510, 641, 846, 1609, 2457, 2538 |
| BseCI | ATCGAT | 1 cut(s) | 877 |
| BseDI | CCNNGG | 8 cut(s) | 274, 508, 639, 1503, 1608, 2354, 2455, 2537 |
| BseGI | GGATG | 6 cut(s) | 72, 186, 313, 1183, 2002, 2214 |
| BseMI | GCAATG | 2 cut(s) | 1402, 1790 |
| BseMII | CTCAG | 8 cut(s) | 206, 432, 686, 695, 743, 791, 943, 1677 |
| BsePI | GCGCGC | 1 cut(s) | 264 |
| BseRI | GAGGAG | 1 cut(s) | 2084 |
| BseSI | GKGCMC | 1 cut(s) | 2544 |
| BseXI | GCAGC | 5 cut(s) | 639, 1106, 1210, 2101, 2272 |
| BseYI | CCCAGC | 4 cut(s) | 171, 370, 575, 2204 |
| Bsh1236I | CGCG | 2 cut(s) | 125, 266 |
| Bsh1285I | CGRYCG | 1 cut(s) | 52 |
| BshFI | GGCC | 7 cut(s) | 70, 149, 188, 279, 1216, 2454, 2494 |
| BshVI | ATCGAT | 1 cut(s) | 877 |
| BsiEI | CGRYCG | 1 cut(s) | 52 |
| BsiHKAI | GWGCWC | 5 cut(s) | 87, 415, 871, 2234, 2314 |
| BsiSI | CCGG | 2 cut(s) | 2370, 2606 |
| BslFI | GGGAC | 5 cut(s) | 148, 352, 1513, 1693, 1831 |
| BsmAI | GTCTC | 5 cut(s) | 304, 551, 1313, 1603, 2066 |
| BsmFI | GGGAC | 5 cut(s) | 148, 352, 1513, 1693, 1831 |
| BsmI | GAATGC | 3 cut(s) | 364, 2269, 2522 |
| BsnI | GGCC | 7 cut(s) | 70, 149, 188, 279, 1216, 2454, 2494 |
| Bsp119I | TTCGAA | 1 cut(s) | 356 |
| Bsp1286I | GDGCHC | 8 cut(s) | 87, 236, 415, 871, 1533, 2234, 2314, 2544 |
| Bsp143I | GATC | 8 cut(s) | 36, 99, 111, 285, 976, 1071, 1701, 2158 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 672 |
| Bsp19I | CCATGG | 1 cut(s) | 1503 |
| BspANI | GGCC | 7 cut(s) | 70, 149, 188, 279, 1216, 2454, 2494 |
| BspCNI | CTCAG | 8 cut(s) | 205, 433, 685, 694, 742, 790, 942, 1678 |
| BspDI | ATCGAT | 1 cut(s) | 877 |
| BspFNI | CGCG | 2 cut(s) | 125, 266 |
| BspHI | TCATGA | 1 cut(s) | 427 |
| BspLI | GGNNCC | 6 cut(s) | 163, 164, 235, 645, 1501, 2361 |
| BspMI | ACCTGC | 2 cut(s) | 269, 1019 |
| BspOI | GCTAGC | 1 cut(s) | 1454 |
| BspPI | GGATC | 2 cut(s) | 94, 1709 |
| BspT104I | TTCGAA | 1 cut(s) | 356 |
| BsrBI | CCGCTC | 2 cut(s) | 1765, 1780 |
| BsrDI | GCAATG | 2 cut(s) | 1402, 1790 |
| BsrFI | RCCGGY | 1 cut(s) | 2369 |
| BssAI | RCCGGY | 1 cut(s) | 2369 |
| BssECI | CCNNGG | 8 cut(s) | 274, 508, 639, 1503, 1608, 2354, 2455, 2537 |
| BssHII | GCGCGC | 1 cut(s) | 264 |
| BssMI | GATC | 8 cut(s) | 36, 99, 111, 285, 976, 1071, 1701, 2158 |
| BssSI | CACGAG | 1 cut(s) | 414 |
| BssT1I | CCWWGG | 2 cut(s) | 1503, 2354 |
| Bst2BI | CACGAG | 1 cut(s) | 414 |
| Bst2UI | CCWGG | 8 cut(s) | 206, 384, 510, 641, 846, 1609, 2457, 2538 |
| Bst6I | CTCTTC | 2 cut(s) | 1026, 2140 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 181, 1392 |
| BstBAI | YACGTR | 1 cut(s) | 950 |
| BstBI | TTCGAA | 1 cut(s) | 356 |
| BstDEI | CTNAG | 8 cut(s) | 192, 441, 672, 681, 729, 777, 929, 1686 |
| BstDSI | CCRYGG | 1 cut(s) | 1503 |
| BstEII | GGTNACC | 1 cut(s) | 218 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 227 |
| BstF5I | GGATG | 6 cut(s) | 72, 186, 313, 1183, 2002, 2214 |
| BstFNI | CGCG | 2 cut(s) | 125, 266 |
| BstH2I | RGCGCY | 1 cut(s) | 139 |
| BstHHI | GCGC | 4 cut(s) | 125, 138, 266, 268 |
| BstKTI | GATC | 8 cut(s) | 39, 102, 114, 288, 979, 1074, 1704, 2161 |
| BstMAI | GTCTC | 5 cut(s) | 304, 551, 1313, 1603, 2066 |
| BstMBI | GATC | 8 cut(s) | 36, 99, 111, 285, 976, 1071, 1701, 2158 |
| BstMCI | CGRYCG | 1 cut(s) | 52 |
| BstNI | CCWGG | 8 cut(s) | 206, 384, 510, 641, 846, 1609, 2457, 2538 |
| BstNSI | RCATGY | 3 cut(s) | 327, 1761, 2333 |
| BstPI | GGTNACC | 1 cut(s) | 218 |
| BstSCI | CCNGG | 9 cut(s) | 204, 382, 508, 639, 844, 1607, 2455, 2536, 2605 |
| BstSFI | CTRYAG | 1 cut(s) | 139 |
| BstSLI | GKGCMC | 1 cut(s) | 2544 |
| BstUI | CGCG | 2 cut(s) | 125, 266 |
| BstV1I | GCAGC | 5 cut(s) | 639, 1106, 1210, 2101, 2272 |
| BstX2I | RGATCY | 2 cut(s) | 99, 2158 |
| BstYI | RGATCY | 2 cut(s) | 99, 2158 |
| Bsu15I | ATCGAT | 1 cut(s) | 877 |
| Bsu36I | CCTNAGG | 1 cut(s) | 729 |
| BsuI | GTATCC | 1 cut(s) | 2397 |
| BsuRI | GGCC | 7 cut(s) | 70, 149, 188, 279, 1216, 2454, 2494 |
| BsuTUI | ATCGAT | 1 cut(s) | 877 |
| BtgI | CCRYGG | 1 cut(s) | 1503 |
| BtrI | CACGTC | 2 cut(s) | 7, 91 |
| BtsCI | GGATG | 6 cut(s) | 72, 186, 313, 1183, 2002, 2214 |
| BtsI | GCAGTG | 1 cut(s) | 415 |
| BtsIMutI | CAGTG | 6 cut(s) | 415, 1029, 1452, 1717, 1862, 2542 |
| BveI | ACCTGC | 2 cut(s) | 269, 1019 |
| CaiI | CAGNNNCTG | 1 cut(s) | 560 |
| CciI | TCATGA | 1 cut(s) | 427 |
| CfoI | GCGC | 4 cut(s) | 125, 138, 266, 268 |
| Cfr10I | RCCGGY | 1 cut(s) | 2369 |
| Cfr13I | GGNCC | 6 cut(s) | 69, 162, 821, 933, 1500, 2453 |
| ClaI | ATCGAT | 1 cut(s) | 877 |
| Csp6I | GTAC | 5 cut(s) | 531, 857, 2277, 2327, 2412 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 931, 966 |
| CviQI | GTAC | 5 cut(s) | 531, 857, 2277, 2327, 2412 |
| DdeI | CTNAG | 8 cut(s) | 192, 441, 672, 681, 729, 777, 929, 1686 |
| DpnI | GATC | 8 cut(s) | 38, 101, 113, 287, 978, 1073, 1703, 2160 |
| DpnII | GATC | 8 cut(s) | 36, 99, 111, 285, 976, 1071, 1701, 2158 |
| DraIII | CACNNNGTG | 1 cut(s) | 953 |
| EaeI | YGGCCR | 2 cut(s) | 186, 1214 |
| Eam1104I | CTCTTC | 2 cut(s) | 1026, 2140 |
| EarI | CTCTTC | 2 cut(s) | 1026, 2140 |
| EciI | GGCGGA | 1 cut(s) | 233 |
| Ecl136II | GAGCTC | 1 cut(s) | 2232 |
| Eco130I | CCWWGG | 2 cut(s) | 1503, 2354 |
| Eco24I | GRGCYC | 3 cut(s) | 236, 1533, 2234 |
| Eco32I | GATATC | 1 cut(s) | 1639 |
| Eco47I | GGWCC | 4 cut(s) | 162, 821, 933, 1500 |
| Eco47III | AGCGCT | 1 cut(s) | 137 |
| Eco53kI | GAGCTC | 1 cut(s) | 2232 |
| Eco57I | CTGAAG | 3 cut(s) | 53, 1849, 2241 |
| Eco72I | CACGTG | 1 cut(s) | 950 |
| Eco81I | CCTNAGG | 1 cut(s) | 729 |
| Eco91I | GGTNACC | 1 cut(s) | 218 |
| EcoICRI | GAGCTC | 1 cut(s) | 2232 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 227 |
| EcoO109I | RGGNCCY | 2 cut(s) | 162, 933 |
| EcoO65I | GGTNACC | 1 cut(s) | 218 |
| EcoRI | GAATTC | 1 cut(s) | 1585 |
| EcoRII | CCWGG | 8 cut(s) | 204, 382, 508, 639, 844, 1607, 2455, 2536 |
| EcoRV | GATATC | 1 cut(s) | 1639 |
| EcoT14I | CCWWGG | 2 cut(s) | 1503, 2354 |
| EcoT38I | GRGCYC | 3 cut(s) | 236, 1533, 2234 |
| ErhI | CCWWGG | 2 cut(s) | 1503, 2354 |
| FaqI | GGGAC | 5 cut(s) | 148, 352, 1513, 1693, 1831 |
| FauI | CCCGC | 4 cut(s) | 415, 728, 732, 1770 |
| FauNDI | CATATG | 2 cut(s) | 478, 601 |
| FokI | GGATG | 6 cut(s) | 59, 193, 320, 1190, 2009, 2221 |
| FriOI | GRGCYC | 3 cut(s) | 236, 1533, 2234 |
| GlaI | GCGC | 4 cut(s) | 124, 137, 265, 267 |
| GsaI | CCCAGC | 4 cut(s) | 175, 374, 579, 2208 |
| GsuI | CTGGAG | 3 cut(s) | 209, 1322, 1591 |
| HaeII | RGCGCY | 1 cut(s) | 139 |
| HaeIII | GGCC | 7 cut(s) | 70, 149, 188, 279, 1216, 2454, 2494 |
| HapII | CCGG | 2 cut(s) | 2370, 2606 |
| HhaI | GCGC | 4 cut(s) | 125, 138, 266, 268 |
| Hin6I | GCGC | 4 cut(s) | 123, 136, 264, 266 |
| HinP1I | GCGC | 4 cut(s) | 123, 136, 264, 266 |
| HindIII | AAGCTT | 1 cut(s) | 1061 |
| HinfI | GANTC | 7 cut(s) | 448, 469, 874, 986, 1430, 1470, 2598 |
| HpaII | CCGG | 2 cut(s) | 2370, 2606 |
| HphI | GGTGA | 8 cut(s) | 212, 536, 965, 1328, 1567, 1949, 2522, 2525 |
| Hpy166II | GTNNAC | 3 cut(s) | 623, 894, 2037 |
| Hpy188I | TCNGA | 9 cut(s) | 157, 275, 612, 873, 925, 1643, 1687, 1868, 2163 |
| Hpy188III | TCNNGA | 6 cut(s) | 40, 226, 428, 1928, 2145, 2469 |
| Hpy8I | GTNNAC | 3 cut(s) | 623, 894, 2037 |
| Hpy99I | CGWCG | 2 cut(s) | 46, 92 |
| HpyCH4IV | ACGT | 3 cut(s) | 6, 90, 949 |
| HpyF3I | CTNAG | 8 cut(s) | 192, 441, 672, 681, 729, 777, 929, 1686 |
| HpySE526I | ACGT | 3 cut(s) | 6, 90, 949 |
| HspAI | GCGC | 4 cut(s) | 123, 136, 264, 266 |
| KflI | GGGWCCC | 1 cut(s) | 162 |
| Kzo9I | GATC | 8 cut(s) | 36, 99, 111, 285, 976, 1071, 1701, 2158 |
| LmnI | GCTCC | 6 cut(s) | 133, 239, 847, 1777, 2229, 2309 |
| Lsp1109I | GCAGC | 5 cut(s) | 639, 1106, 1210, 2101, 2272 |
| LweI | GCATC | 1 cut(s) | 171 |
| MaeII | ACGT | 3 cut(s) | 6, 90, 949 |
| MalI | GATC | 8 cut(s) | 38, 101, 113, 287, 978, 1073, 1703, 2160 |
| MbiI | CCGCTC | 2 cut(s) | 1765, 1780 |
| MboI | GATC | 8 cut(s) | 36, 99, 111, 285, 976, 1071, 1701, 2158 |
| MboII | GAAGA | 9 cut(s) | 46, 525, 981, 1043, 1641, 1952, 2012, 2127, 2567 |
| MfeI | CAATTG | 2 cut(s) | 1139, 2106 |
| MflI | RGATCY | 2 cut(s) | 99, 2158 |
| MhlI | GDGCHC | 8 cut(s) | 87, 236, 415, 871, 1533, 2234, 2314, 2544 |
| MlsI | TGGCCA | 1 cut(s) | 188 |
| MluNI | TGGCCA | 1 cut(s) | 188 |
| MlyI | GAGTC | 3 cut(s) | 442, 1479, 2607 |
| MmeI | TCCRAC | 1 cut(s) | 2314 |
| Mox20I | TGGCCA | 1 cut(s) | 188 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1585 |
| MscI | TGGCCA | 1 cut(s) | 188 |
| MseI | TTAA | 8 cut(s) | 318, 402, 900, 969, 1017, 1458, 1662, 2175 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1253, 1825 |
| Msp20I | TGGCCA | 1 cut(s) | 188 |
| MspA1I | CMGCKG | 3 cut(s) | 1097, 1201, 2258 |
| MspI | CCGG | 2 cut(s) | 2370, 2606 |
| MspR9I | CCNGG | 9 cut(s) | 206, 384, 510, 641, 846, 1609, 2457, 2538, 2607 |
| MunI | CAATTG | 2 cut(s) | 1139, 2106 |
| Mva1269I | GAATGC | 3 cut(s) | 364, 2269, 2522 |
| MvaI | CCWGG | 8 cut(s) | 206, 384, 510, 641, 846, 1609, 2457, 2538 |
| MvnI | CGCG | 2 cut(s) | 125, 266 |
| NciI | CCSGG | 1 cut(s) | 2607 |
| NcoI | CCATGG | 1 cut(s) | 1503 |
| NdeI | CATATG | 2 cut(s) | 478, 601 |
| NdeII | GATC | 8 cut(s) | 36, 99, 111, 285, 976, 1071, 1701, 2158 |
| NheI | GCTAGC | 1 cut(s) | 1450 |
| NlaIV | GGNNCC | 6 cut(s) | 163, 164, 235, 645, 1501, 2361 |
| NmuCI | GTSAC | 6 cut(s) | 53, 218, 436, 910, 1859, 2528 |
| NspI | RCATGY | 3 cut(s) | 327, 1761, 2333 |
| NspV | TTCGAA | 1 cut(s) | 356 |
| PaeI | GCATGC | 1 cut(s) | 1761 |
| PagI | TCATGA | 1 cut(s) | 427 |
| PaqCI | CACCTGC | 1 cut(s) | 269 |
| PauI | GCGCGC | 1 cut(s) | 264 |
| PciI | ACATGT | 2 cut(s) | 323, 2329 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 23 |
| PctI | GAATGC | 3 cut(s) | 364, 2269, 2522 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1585 |
| PfeI | GAWTC | 4 cut(s) | 469, 874, 986, 1430 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 560, 593, 2585 |
| PleI | GAGTC | 3 cut(s) | 442, 1478, 2606 |
| PmaCI | CACGTG | 1 cut(s) | 950 |
| PmlI | CACGTG | 1 cut(s) | 950 |
| PpsI | GAGTC | 3 cut(s) | 442, 1478, 2606 |
| Ppu21I | YACGTR | 1 cut(s) | 950 |
| PpuMI | RGGWCCY | 2 cut(s) | 162, 933 |
| PscI | ACATGT | 2 cut(s) | 323, 2329 |
| PsiI | TTATAA | 2 cut(s) | 1730, 1802 |
| Psp124BI | GAGCTC | 1 cut(s) | 2234 |
| Psp5II | RGGWCCY | 2 cut(s) | 162, 933 |
| Psp6I | CCWGG | 8 cut(s) | 204, 382, 508, 639, 844, 1607, 2455, 2536 |
| PspCI | CACGTG | 1 cut(s) | 950 |
| PspEI | GGTNACC | 1 cut(s) | 218 |
| PspFI | CCCAGC | 4 cut(s) | 171, 370, 575, 2204 |
| PspGI | CCWGG | 8 cut(s) | 204, 382, 508, 639, 844, 1607, 2455, 2536 |
| PspN4I | GGNNCC | 6 cut(s) | 163, 164, 235, 645, 1501, 2361 |
| PspPI | GGNCC | 6 cut(s) | 69, 162, 821, 933, 1500, 2453 |
| PspPPI | RGGWCCY | 2 cut(s) | 162, 933 |
| PstNI | CAGNNNCTG | 1 cut(s) | 560 |
| PsuI | RGATCY | 2 cut(s) | 99, 2158 |
| PteI | GCGCGC | 1 cut(s) | 264 |
| PvuII | CAGCTG | 2 cut(s) | 1097, 2258 |
| RsaI | GTAC | 5 cut(s) | 532, 858, 2278, 2328, 2413 |
| RsaNI | GTAC | 5 cut(s) | 531, 857, 2277, 2327, 2412 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1253, 1825 |
| SacI | GAGCTC | 1 cut(s) | 2234 |
| SaqAI | TTAA | 8 cut(s) | 318, 402, 900, 969, 1017, 1458, 1662, 2175 |
| Sau3AI | GATC | 8 cut(s) | 36, 99, 111, 285, 976, 1071, 1701, 2158 |
| Sau96I | GGNCC | 6 cut(s) | 69, 162, 821, 933, 1500, 2453 |
| SchI | GAGTC | 3 cut(s) | 442, 1479, 2607 |
| ScrFI | CCNGG | 9 cut(s) | 206, 384, 510, 641, 846, 1609, 2457, 2538, 2607 |
| SduI | GDGCHC | 8 cut(s) | 87, 236, 415, 871, 1533, 2234, 2314, 2544 |
| SfaNI | GCATC | 1 cut(s) | 171 |
| SfcI | CTRYAG | 1 cut(s) | 139 |
| SfuI | TTCGAA | 1 cut(s) | 356 |
| SinI | GGWCC | 4 cut(s) | 162, 821, 933, 1500 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1253, 1825 |
| SmlI | CTYRAG | 2 cut(s) | 1542, 1766 |
| SmoI | CTYRAG | 2 cut(s) | 1542, 1766 |
| SpeI | ACTAGT | 1 cut(s) | 1511 |
| SphI | GCATGC | 1 cut(s) | 1761 |
| SstI | GAGCTC | 1 cut(s) | 2234 |
| StyD4I | CCNGG | 9 cut(s) | 204, 382, 508, 639, 844, 1607, 2455, 2536, 2605 |
| StyI | CCWWGG | 2 cut(s) | 1503, 2354 |
| TaiI | ACGT | 3 cut(s) | 9, 93, 952 |
| TaqI | TCGA | 4 cut(s) | 87, 356, 877, 2567 |
| TatI | WGTACW | 3 cut(s) | 530, 856, 2326 |
| TauI | GCSGC | 6 cut(s) | 120, 123, 282, 1295, 1757, 1783 |
| TfiI | GAWTC | 4 cut(s) | 469, 874, 986, 1430 |
| Tru1I | TTAA | 8 cut(s) | 318, 402, 900, 969, 1017, 1458, 1662, 2175 |
| Tru9I | TTAA | 8 cut(s) | 318, 402, 900, 969, 1017, 1458, 1662, 2175 |
| TscAI | CASTG | 6 cut(s) | 415, 1029, 1452, 1717, 1862, 2549 |
| TseFI | GTSAC | 6 cut(s) | 53, 218, 436, 910, 1859, 2528 |
| TseI | GCWGC | 5 cut(s) | 627, 1094, 1198, 2089, 2285 |
| Tsp45I | GTSAC | 6 cut(s) | 53, 218, 436, 910, 1859, 2528 |
| TspDTI | ATGAA | 9 cut(s) | 444, 852, 1270, 1961, 2001, 2013, 2141, 2225, 2462 |
| TspGWI | ACGGA | 3 cut(s) | 32, 59, 226 |
| TspRI | CASTG | 6 cut(s) | 415, 1029, 1452, 1717, 1862, 2549 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 560, 593, 2585 |
| VpaK11BI | GGWCC | 4 cut(s) | 162, 821, 933, 1500 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 227 |
| XapI | RAATTY | 8 cut(s) | 661, 709, 861, 999, 1106, 1134, 1585, 2042 |
| XbaI | TCTAGA | 1 cut(s) | 2144 |
| XceI | RCATGY | 3 cut(s) | 327, 1761, 2333 |
| XmaJI | CCTAGG | 1 cut(s) | 2354 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1585 |