Pentatricopeptide repeat-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 527 |
| Acc65I | GGTACC | 1 cut(s) | 654 |
| AccB1I | GGYRCC | 2 cut(s) | 654, 1246 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 313, 1800 |
| AccBSI | CCGCTC | 2 cut(s) | 296, 2079 |
| AccII | CGCG | 2 cut(s) | 557, 1953 |
| AciI | CCGC | 7 cut(s) | 39, 294, 557, 707, 1220, 2079, 2188 |
| AclWI | GGATC | 6 cut(s) | 73, 298, 1172, 2009, 2081, 2094 |
| AcoI | YGGCCR | 1 cut(s) | 1759 |
| AcsI | RAATTY | 3 cut(s) | 319, 672, 1621 |
| AcuI | CTGAAG | 4 cut(s) | 228, 996, 1062, 1190 |
| AfaI | GTAC | 6 cut(s) | 218, 656, 775, 1370, 2039, 2155 |
| AflII | CTTAAG | 1 cut(s) | 1837 |
| AgsI | TTSAA | 8 cut(s) | 97, 416, 515, 677, 741, 1009, 1015, 1163 |
| AjiI | CACGTC | 1 cut(s) | 2053 |
| AjnI | CCWGG | 7 cut(s) | 306, 396, 658, 1364, 1430, 1799, 1927 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 751, 783, 1344, 1376 |
| AleI | CACNNNNGTG | 1 cut(s) | 1821 |
| Alw21I | GWGCWC | 6 cut(s) | 917, 988, 1676, 1836, 1861, 2408 |
| Alw26I | GTCTC | 6 cut(s) | 230, 605, 1397, 1568, 1624, 1753 |
| Alw44I | GTGCAC | 1 cut(s) | 913 |
| AlwI | GGATC | 6 cut(s) | 73, 298, 1172, 2009, 2081, 2094 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1757 |
| Ama87I | CYCGRG | 1 cut(s) | 2194 |
| AoxI | GGCC | 5 cut(s) | 664, 1001, 1379, 1569, 1759 |
| ApaLI | GTGCAC | 1 cut(s) | 913 |
| ApeKI | GCWGC | 4 cut(s) | 518, 692, 881, 2399 |
| ApoI | RAATTY | 3 cut(s) | 319, 672, 1621 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1465, 1497 |
| AseI | ATTAAT | 1 cut(s) | 1083 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1128 |
| Asp718I | GGTACC | 1 cut(s) | 654 |
| AspLEI | GCGC | 4 cut(s) | 528, 557, 1275, 1516 |
| AspS9I | GGNCC | 4 cut(s) | 664, 686, 1570, 2302 |
| AsuC2I | CCSGG | 2 cut(s) | 452, 652 |
| AsuHPI | GGTGA | 1 cut(s) | 290 |
| AsuII | TTCGAA | 1 cut(s) | 1729 |
| AsuNHI | GCTAGC | 1 cut(s) | 1964 |
| AvaI | CYCGRG | 1 cut(s) | 2194 |
| AvaII | GGWCC | 2 cut(s) | 686, 2302 |
| AxyI | CCTNAGG | 2 cut(s) | 831, 1608 |
| BaeGI | GKGCMC | 1 cut(s) | 917 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1047, 1080 |
| BalI | TGGCCA | 1 cut(s) | 1761 |
| BamHI | GGATCC | 1 cut(s) | 2086 |
| BanI | GGYRCC | 2 cut(s) | 654, 1246 |
| BanII | GRGCYC | 4 cut(s) | 988, 1836, 1861, 2408 |
| BauI | CACGAG | 1 cut(s) | 1050 |
| BbsI | GAAGAC | 1 cut(s) | 866 |
| Bbv12I | GWGCWC | 6 cut(s) | 917, 988, 1676, 1836, 1861, 2408 |
| BbvI | GCAGC | 4 cut(s) | 505, 704, 868, 2386 |
| BccI | CCATC | 9 cut(s) | 134, 172, 291, 1371, 1476, 1495, 1515, 2098, 2111 |
| BceAI | ACGGC | 1 cut(s) | 1713 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 624, 658, 2378, 2412 |
| BciT130I | CCWGG | 7 cut(s) | 308, 398, 660, 1366, 1432, 1801, 1929 |
| BciVI | GTATCC | 1 cut(s) | 1409 |
| BclI | TGATCA | 1 cut(s) | 778 |
| BcnI | CCSGG | 2 cut(s) | 452, 652 |
| BcoDI | GTCTC | 6 cut(s) | 230, 605, 1397, 1568, 1624, 1753 |
| BfaI | CTAG | 9 cut(s) | 159, 374, 612, 921, 1254, 1634, 1965, 2030, 2114 |
| BfrI | CTTAAG | 1 cut(s) | 1837 |
| BfuI | GTATCC | 1 cut(s) | 1409 |
| BglII | AGATCT | 1 cut(s) | 376 |
| BisI | GCNGC | 7 cut(s) | 519, 558, 693, 708, 882, 2188, 2400 |
| BlpI | GCTNAGC | 2 cut(s) | 368, 1860 |
| BlsI | GCNGC | 7 cut(s) | 520, 559, 694, 709, 883, 2189, 2401 |
| BmcAI | AGTACT | 2 cut(s) | 218, 2155 |
| Bme1390I | CCNGG | 9 cut(s) | 308, 398, 452, 652, 660, 1366, 1432, 1801, 1929 |
| Bme18I | GGWCC | 2 cut(s) | 686, 2302 |
| BmeT110I | CYCGRG | 1 cut(s) | 2194 |
| BmgBI | CACGTC | 1 cut(s) | 2053 |
| BmgT120I | GGNCC | 4 cut(s) | 664, 686, 1570, 2302 |
| BmiI | GGNNCC | 6 cut(s) | 656, 665, 687, 816, 1248, 2088 |
| BmrFI | CCNGG | 9 cut(s) | 308, 398, 452, 652, 660, 1366, 1432, 1801, 1929 |
| BmrI | ACTGGG | 2 cut(s) | 156, 2126 |
| BmsI | GCATC | 4 cut(s) | 719, 1084, 1096, 1983 |
| BmtI | GCTAGC | 1 cut(s) | 1968 |
| BmuI | ACTGGG | 2 cut(s) | 156, 2126 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1848 |
| BpiI | GAAGAC | 1 cut(s) | 866 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1764, 1796 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 368, 1860 |
| Bpu14I | TTCGAA | 1 cut(s) | 1729 |
| BpuEI | CTTGAG | 2 cut(s) | 1009, 1405 |
| BpuMI | CCSGG | 2 cut(s) | 452, 652 |
| BsaI | GGTCTC | 1 cut(s) | 230 |
| BsaWI | WCCGGW | 2 cut(s) | 811, 1679 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 173, 203 |
| Bse118I | RCCGGY | 1 cut(s) | 666 |
| Bse1I | ACTGG | 2 cut(s) | 151, 2132 |
| Bse21I | CCTNAGG | 2 cut(s) | 831, 1608 |
| Bse3DI | GCAATG | 5 cut(s) | 573, 876, 1550, 1908, 2079 |
| BseBI | CCWGG | 7 cut(s) | 308, 398, 660, 1366, 1432, 1801, 1929 |
| BseMI | GCAATG | 5 cut(s) | 573, 876, 1550, 1908, 2079 |
| BseMII | CTCAG | 8 cut(s) | 359, 822, 1185, 1599, 1764, 1795, 1874, 2331 |
| BseNI | ACTGG | 2 cut(s) | 151, 2132 |
| BseRI | GAGGAG | 3 cut(s) | 1230, 1310, 1469 |
| BseSI | GKGCMC | 1 cut(s) | 917 |
| BseXI | GCAGC | 4 cut(s) | 505, 704, 868, 2386 |
| BsgI | GTGCAG | 2 cut(s) | 504, 1806 |
| Bsh1236I | CGCG | 2 cut(s) | 557, 1953 |
| BshFI | GGCC | 5 cut(s) | 666, 1003, 1381, 1571, 1761 |
| BshNI | GGYRCC | 2 cut(s) | 654, 1246 |
| BsiHKAI | GWGCWC | 6 cut(s) | 917, 988, 1676, 1836, 1861, 2408 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2194 |
| BsiSI | CCGG | 7 cut(s) | 222, 451, 651, 667, 812, 1386, 1680 |
| BslFI | GGGAC | 5 cut(s) | 584, 699, 1856, 2114, 2229 |
| BsmAI | GTCTC | 6 cut(s) | 230, 605, 1397, 1568, 1624, 1753 |
| BsmBI | CGTCTC | 1 cut(s) | 605 |
| BsmFI | GGGAC | 5 cut(s) | 584, 699, 1856, 2114, 2229 |
| BsmI | GAATGC | 1 cut(s) | 2097 |
| BsnI | GGCC | 5 cut(s) | 666, 1003, 1381, 1571, 1761 |
| Bso31I | GGTCTC | 1 cut(s) | 230 |
| BsoBI | CYCGRG | 1 cut(s) | 2194 |
| Bsp119I | TTCGAA | 1 cut(s) | 1729 |
| Bsp1286I | GDGCHC | 6 cut(s) | 917, 988, 1676, 1836, 1861, 2408 |
| Bsp143I | GATC | 8 cut(s) | 78, 303, 376, 778, 1177, 2014, 2086, 2310 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 368, 1860 |
| Bsp19I | CCATGG | 5 cut(s) | 30, 681, 998, 1339, 2046 |
| BspACI | CCGC | 7 cut(s) | 39, 294, 557, 707, 1220, 2079, 2188 |
| BspANI | GGCC | 5 cut(s) | 666, 1003, 1381, 1571, 1761 |
| BspCNI | CTCAG | 8 cut(s) | 360, 823, 1184, 1600, 1763, 1794, 1873, 2330 |
| BspFNI | CGCG | 2 cut(s) | 557, 1953 |
| BspLI | GGNNCC | 6 cut(s) | 656, 665, 687, 816, 1248, 2088 |
| BspOI | GCTAGC | 1 cut(s) | 1968 |
| BspPI | GGATC | 6 cut(s) | 73, 298, 1172, 2009, 2081, 2094 |
| BspT104I | TTCGAA | 1 cut(s) | 1729 |
| BspT107I | GGYRCC | 2 cut(s) | 654, 1246 |
| BspTI | CTTAAG | 1 cut(s) | 1837 |
| BspTNI | GGTCTC | 1 cut(s) | 230 |
| BsrBI | CCGCTC | 2 cut(s) | 296, 2079 |
| BsrDI | GCAATG | 5 cut(s) | 573, 876, 1550, 1908, 2079 |
| BsrFI | RCCGGY | 1 cut(s) | 666 |
| BsrI | ACTGG | 2 cut(s) | 151, 2132 |
| BssAI | RCCGGY | 1 cut(s) | 666 |
| BssMI | GATC | 8 cut(s) | 78, 303, 376, 778, 1177, 2014, 2086, 2310 |
| BssSI | CACGAG | 1 cut(s) | 1050 |
| BssT1I | CCWWGG | 6 cut(s) | 30, 579, 681, 998, 1339, 2046 |
| Bst2BI | CACGAG | 1 cut(s) | 1050 |
| Bst2UI | CCWGG | 7 cut(s) | 308, 398, 660, 1366, 1432, 1801, 1929 |
| Bst4CI | ACNGT | 8 cut(s) | 548, 947, 1159, 1496, 1823, 2212, 2269, 2365 |
| Bst6I | CTCTTC | 4 cut(s) | 127, 165, 618, 1287 |
| BstAFI | CTTAAG | 1 cut(s) | 1837 |
| BstBI | TTCGAA | 1 cut(s) | 1729 |
| BstC8I | GCNNGC | 8 cut(s) | 668, 867, 879, 1689, 1759, 1966, 2233, 2404 |
| BstDEI | CTNAG | 9 cut(s) | 368, 470, 831, 1171, 1608, 1750, 1781, 1860, 2317 |
| BstDSI | CCRYGG | 5 cut(s) | 30, 681, 998, 1339, 2046 |
| BstEII | GGTNACC | 1 cut(s) | 1426 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 134, 834, 1363 |
| BstFNI | CGCG | 2 cut(s) | 557, 1953 |
| BstHHI | GCGC | 4 cut(s) | 528, 557, 1275, 1516 |
| BstKTI | GATC | 8 cut(s) | 81, 306, 379, 781, 1180, 2017, 2089, 2313 |
| BstMAI | GTCTC | 6 cut(s) | 230, 605, 1397, 1568, 1624, 1753 |
| BstMBI | GATC | 8 cut(s) | 78, 303, 376, 778, 1177, 2014, 2086, 2310 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 112, 259, 285, 461, 814, 1511, 1697, 1910 |
| BstNI | CCWGG | 7 cut(s) | 308, 398, 660, 1366, 1432, 1801, 1929 |
| BstNSI | RCATGY | 2 cut(s) | 206, 1445 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1848 |
| BstPI | GGTNACC | 1 cut(s) | 1426 |
| BstSCI | CCNGG | 9 cut(s) | 306, 396, 450, 650, 658, 1364, 1430, 1799, 1927 |
| BstSLI | GKGCMC | 1 cut(s) | 917 |
| BstUI | CGCG | 2 cut(s) | 557, 1953 |
| BstV1I | GCAGC | 4 cut(s) | 505, 704, 868, 2386 |
| BstV2I | GAAGAC | 1 cut(s) | 866 |
| BstX2I | RGATCY | 4 cut(s) | 303, 376, 1177, 2086 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1769 |
| BstYI | RGATCY | 4 cut(s) | 303, 376, 1177, 2086 |
| Bsu36I | CCTNAGG | 2 cut(s) | 831, 1608 |
| BsuI | GTATCC | 1 cut(s) | 1409 |
| BsuRI | GGCC | 5 cut(s) | 666, 1003, 1381, 1571, 1761 |
| BtgI | CCRYGG | 5 cut(s) | 30, 681, 998, 1339, 2046 |
| BtgZI | GCGATG | 1 cut(s) | 269 |
| BtrI | CACGTC | 1 cut(s) | 2053 |
| BtsI | GCAGTG | 3 cut(s) | 521, 915, 2271 |
| BtsIMutI | CAGTG | 8 cut(s) | 521, 915, 952, 1501, 1666, 1789, 2271, 2361 |
| Cac8I | GCNNGC | 8 cut(s) | 668, 867, 879, 1689, 1759, 1966, 2233, 2404 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1757 |
| CfoI | GCGC | 4 cut(s) | 528, 557, 1275, 1516 |
| Cfr10I | RCCGGY | 1 cut(s) | 666 |
| Cfr13I | GGNCC | 4 cut(s) | 664, 686, 1570, 2302 |
| CseI | GACGC | 1 cut(s) | 871 |
| Csp6I | GTAC | 6 cut(s) | 217, 655, 774, 1369, 2038, 2154 |
| CviQI | GTAC | 6 cut(s) | 217, 655, 774, 1369, 2038, 2154 |
| DdeI | CTNAG | 9 cut(s) | 368, 470, 831, 1171, 1608, 1750, 1781, 1860, 2317 |
| DpnI | GATC | 8 cut(s) | 80, 305, 378, 780, 1179, 2016, 2088, 2312 |
| DpnII | GATC | 8 cut(s) | 78, 303, 376, 778, 1177, 2014, 2086, 2310 |
| EaeI | YGGCCR | 1 cut(s) | 1759 |
| Eam1104I | CTCTTC | 4 cut(s) | 127, 165, 618, 1287 |
| EarI | CTCTTC | 4 cut(s) | 127, 165, 618, 1287 |
| Ecl136II | GAGCTC | 4 cut(s) | 986, 1834, 1859, 2406 |
| Eco130I | CCWWGG | 6 cut(s) | 30, 579, 681, 998, 1339, 2046 |
| Eco24I | GRGCYC | 4 cut(s) | 988, 1836, 1861, 2408 |
| Eco31I | GGTCTC | 1 cut(s) | 230 |
| Eco47I | GGWCC | 2 cut(s) | 686, 2302 |
| Eco53kI | GAGCTC | 4 cut(s) | 986, 1834, 1859, 2406 |
| Eco57I | CTGAAG | 4 cut(s) | 228, 996, 1062, 1190 |
| Eco81I | CCTNAGG | 2 cut(s) | 831, 1608 |
| Eco88I | CYCGRG | 1 cut(s) | 2194 |
| Eco91I | GGTNACC | 1 cut(s) | 1426 |
| EcoICRI | GAGCTC | 4 cut(s) | 986, 1834, 1859, 2406 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 134, 834, 1363 |
| EcoO65I | GGTNACC | 1 cut(s) | 1426 |
| EcoRII | CCWGG | 7 cut(s) | 306, 396, 658, 1364, 1430, 1799, 1927 |
| EcoT14I | CCWWGG | 6 cut(s) | 30, 579, 681, 998, 1339, 2046 |
| EcoT38I | GRGCYC | 4 cut(s) | 988, 1836, 1861, 2408 |
| ErhI | CCWWGG | 6 cut(s) | 30, 579, 681, 998, 1339, 2046 |
| Esp3I | CGTCTC | 1 cut(s) | 605 |
| FaqI | GGGAC | 5 cut(s) | 584, 699, 1856, 2114, 2229 |
| FauI | CCCGC | 1 cut(s) | 32 |
| FauNDI | CATATG | 1 cut(s) | 786 |
| FbaI | TGATCA | 1 cut(s) | 778 |
| Fnu4HI | GCNGC | 7 cut(s) | 519, 558, 693, 708, 882, 2188, 2400 |
| FriOI | GRGCYC | 4 cut(s) | 988, 1836, 1861, 2408 |
| Fsp4HI | GCNGC | 7 cut(s) | 519, 558, 693, 708, 882, 2188, 2400 |
| FspBI | CTAG | 9 cut(s) | 159, 374, 612, 921, 1254, 1634, 1965, 2030, 2114 |
| FspI | TGCGCA | 1 cut(s) | 527 |
| GlaI | GCGC | 4 cut(s) | 527, 556, 1274, 1515 |
| GluI | GCNGC | 7 cut(s) | 519, 558, 693, 708, 882, 2188, 2400 |
| HaeIII | GGCC | 5 cut(s) | 666, 1003, 1381, 1571, 1761 |
| HapII | CCGG | 7 cut(s) | 222, 451, 651, 667, 812, 1386, 1680 |
| HgaI | GACGC | 1 cut(s) | 871 |
| HhaI | GCGC | 4 cut(s) | 528, 557, 1275, 1516 |
| Hin6I | GCGC | 4 cut(s) | 526, 555, 1273, 1514 |
| HinP1I | GCGC | 4 cut(s) | 526, 555, 1273, 1514 |
| HincII | GTYRAC | 3 cut(s) | 27, 52, 1283 |
| HindII | GTYRAC | 3 cut(s) | 27, 52, 1283 |
| HinfI | GANTC | 6 cut(s) | 615, 790, 1709, 1773, 2138, 2217 |
| HpaII | CCGG | 7 cut(s) | 222, 451, 651, 667, 812, 1386, 1680 |
| HphI | GGTGA | 1 cut(s) | 290 |
| Hpy188I | TCNGA | 8 cut(s) | 58, 135, 620, 1585, 1592, 1708, 1753, 2389 |
| Hpy188III | TCNNGA | 4 cut(s) | 602, 1052, 1607, 2022 |
| Hpy99I | CGWCG | 1 cut(s) | 1854 |
| HpyCH4III | ACNGT | 8 cut(s) | 548, 947, 1159, 1496, 1823, 2212, 2269, 2365 |
| HpyCH4IV | ACGT | 3 cut(s) | 45, 1849, 2052 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 112, 259, 285, 461, 814, 1511, 1697, 1910 |
| HpyF3I | CTNAG | 9 cut(s) | 368, 470, 831, 1171, 1608, 1750, 1781, 1860, 2317 |
| HpySE526I | ACGT | 3 cut(s) | 45, 1849, 2052 |
| HspAI | GCGC | 4 cut(s) | 526, 555, 1273, 1514 |
| KpnI | GGTACC | 1 cut(s) | 658 |
| KroI | GCCGGC | 1 cut(s) | 666 |
| KroNI | GCCGGC | 1 cut(s) | 668 |
| Ksp22I | TGATCA | 1 cut(s) | 778 |
| Kzo9I | GATC | 8 cut(s) | 78, 303, 376, 778, 1177, 2014, 2086, 2310 |
| LmnI | GCTCC | 3 cut(s) | 814, 2390, 2411 |
| Lsp1109I | GCAGC | 4 cut(s) | 505, 704, 868, 2386 |
| LweI | GCATC | 4 cut(s) | 719, 1084, 1096, 1983 |
| MaeI | CTAG | 9 cut(s) | 159, 374, 612, 921, 1254, 1634, 1965, 2030, 2114 |
| MaeII | ACGT | 3 cut(s) | 45, 1849, 2052 |
| MaeIII | GTNAC | 4 cut(s) | 947, 1426, 1481, 2269 |
| MalI | GATC | 8 cut(s) | 80, 305, 378, 780, 1179, 2016, 2088, 2312 |
| MbiI | CCGCTC | 2 cut(s) | 296, 2079 |
| MboI | GATC | 8 cut(s) | 78, 303, 376, 778, 1177, 2014, 2086, 2310 |
| MfeI | CAATTG | 3 cut(s) | 1311, 1326, 2066 |
| MflI | RGATCY | 4 cut(s) | 303, 376, 1177, 2086 |
| MhlI | GDGCHC | 6 cut(s) | 917, 988, 1676, 1836, 1861, 2408 |
| MlsI | TGGCCA | 1 cut(s) | 1761 |
| MluNI | TGGCCA | 1 cut(s) | 1761 |
| MlyI | GAGTC | 4 cut(s) | 609, 1782, 2147, 2211 |
| MmeI | TCCRAC | 2 cut(s) | 609, 1375 |
| Mox20I | TGGCCA | 1 cut(s) | 1761 |
| MroNI | GCCGGC | 1 cut(s) | 666 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1128 |
| MscI | TGGCCA | 1 cut(s) | 1761 |
| MseI | TTAA | 8 cut(s) | 327, 906, 969, 1034, 1083, 1838, 1956, 2280 |
| MslI | CAYNNNNRTG | 3 cut(s) | 345, 1821, 2051 |
| Msp20I | TGGCCA | 1 cut(s) | 1761 |
| MspA1I | CMGCKG | 1 cut(s) | 1210 |
| MspCI | CTTAAG | 1 cut(s) | 1837 |
| MspI | CCGG | 7 cut(s) | 222, 451, 651, 667, 812, 1386, 1680 |
| MspR9I | CCNGG | 9 cut(s) | 308, 398, 452, 652, 660, 1366, 1432, 1801, 1929 |
| MunI | CAATTG | 3 cut(s) | 1311, 1326, 2066 |
| Mva1269I | GAATGC | 1 cut(s) | 2097 |
| MvaI | CCWGG | 7 cut(s) | 308, 398, 660, 1366, 1432, 1801, 1929 |
| MvnI | CGCG | 2 cut(s) | 557, 1953 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 112, 259, 285, 461, 814, 1511, 1697, 1910 |
| NaeI | GCCGGC | 1 cut(s) | 668 |
| NciI | CCSGG | 2 cut(s) | 452, 652 |
| NcoI | CCATGG | 5 cut(s) | 30, 681, 998, 1339, 2046 |
| NdeI | CATATG | 1 cut(s) | 786 |
| NdeII | GATC | 8 cut(s) | 78, 303, 376, 778, 1177, 2014, 2086, 2310 |
| NgoMIV | GCCGGC | 1 cut(s) | 666 |
| NheI | GCTAGC | 1 cut(s) | 1964 |
| NlaIV | GGNNCC | 6 cut(s) | 656, 665, 687, 816, 1248, 2088 |
| NmeAIII | GCCGAG | 1 cut(s) | 2304 |
| NmuCI | GTSAC | 3 cut(s) | 947, 1481, 2269 |
| NsbI | TGCGCA | 1 cut(s) | 527 |
| NspI | RCATGY | 2 cut(s) | 206, 1445 |
| NspV | TTCGAA | 1 cut(s) | 1729 |
| OliI | CACNNNNGTG | 1 cut(s) | 1821 |
| PasI | CCCWGGG | 1 cut(s) | 659 |
| PctI | GAATGC | 1 cut(s) | 2097 |
| PdiI | GCCGGC | 1 cut(s) | 668 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1128 |
| PfeI | GAWTC | 2 cut(s) | 790, 1709 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 313, 1800 |
| PfoI | TCCNGGA | 2 cut(s) | 306, 1927 |
| PkrI | GCNGC | 7 cut(s) | 520, 559, 694, 709, 883, 2189, 2401 |
| PleI | GAGTC | 4 cut(s) | 609, 1781, 2146, 2211 |
| PpsI | GAGTC | 4 cut(s) | 609, 1781, 2146, 2211 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1848 |
| PshBI | ATTAAT | 1 cut(s) | 1083 |
| Psp124BI | GAGCTC | 4 cut(s) | 988, 1836, 1861, 2408 |
| Psp6I | CCWGG | 7 cut(s) | 306, 396, 658, 1364, 1430, 1799, 1927 |
| PspEI | GGTNACC | 1 cut(s) | 1426 |
| PspGI | CCWGG | 7 cut(s) | 306, 396, 658, 1364, 1430, 1799, 1927 |
| PspN4I | GGNNCC | 6 cut(s) | 656, 665, 687, 816, 1248, 2088 |
| PspPI | GGNCC | 4 cut(s) | 664, 686, 1570, 2302 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1030, 1062 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1757 |
| PsuI | RGATCY | 4 cut(s) | 303, 376, 1177, 2086 |
| PvuII | CAGCTG | 1 cut(s) | 1210 |
| RsaI | GTAC | 6 cut(s) | 218, 656, 775, 1370, 2039, 2155 |
| RsaNI | GTAC | 6 cut(s) | 217, 655, 774, 1369, 2038, 2154 |
| RseI | CAYNNNNRTG | 3 cut(s) | 345, 1821, 2051 |
| SacI | GAGCTC | 4 cut(s) | 988, 1836, 1861, 2408 |
| SaqAI | TTAA | 8 cut(s) | 327, 906, 969, 1034, 1083, 1838, 1956, 2280 |
| SatI | GCNGC | 7 cut(s) | 519, 558, 693, 708, 882, 2188, 2400 |
| Sau3AI | GATC | 8 cut(s) | 78, 303, 376, 778, 1177, 2014, 2086, 2310 |
| Sau96I | GGNCC | 4 cut(s) | 664, 686, 1570, 2302 |
| ScaI | AGTACT | 2 cut(s) | 218, 2155 |
| SchI | GAGTC | 4 cut(s) | 609, 1782, 2147, 2211 |
| ScrFI | CCNGG | 9 cut(s) | 308, 398, 452, 652, 660, 1366, 1432, 1801, 1929 |
| SduI | GDGCHC | 6 cut(s) | 917, 988, 1676, 1836, 1861, 2408 |
| SfaNI | GCATC | 4 cut(s) | 719, 1084, 1096, 1983 |
| SfuI | TTCGAA | 1 cut(s) | 1729 |
| SinI | GGWCC | 2 cut(s) | 686, 2302 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 345, 1821, 2051 |
| SmlI | CTYRAG | 3 cut(s) | 1024, 1420, 1837 |
| SmoI | CTYRAG | 3 cut(s) | 1024, 1420, 1837 |
| SsiI | CCGC | 7 cut(s) | 39, 294, 557, 707, 1220, 2079, 2188 |
| SspI | AATATT | 1 cut(s) | 1476 |
| SspMI | CTAG | 9 cut(s) | 159, 374, 612, 921, 1254, 1634, 1965, 2030, 2114 |
| SstI | GAGCTC | 4 cut(s) | 988, 1836, 1861, 2408 |
| StyD4I | CCNGG | 9 cut(s) | 306, 396, 450, 650, 658, 1364, 1430, 1799, 1927 |
| StyI | CCWWGG | 6 cut(s) | 30, 579, 681, 998, 1339, 2046 |
| TaaI | ACNGT | 8 cut(s) | 548, 947, 1159, 1496, 1823, 2212, 2269, 2365 |
| TaiI | ACGT | 3 cut(s) | 48, 1852, 2055 |
| TaqI | TCGA | 4 cut(s) | 603, 894, 1317, 1729 |
| TaqII | GACCGA | 2 cut(s) | 254, 2290 |
| TatI | WGTACW | 3 cut(s) | 216, 773, 2153 |
| TauI | GCSGC | 3 cut(s) | 560, 710, 2190 |
| TfiI | GAWTC | 2 cut(s) | 790, 1709 |
| Tru1I | TTAA | 8 cut(s) | 327, 906, 969, 1034, 1083, 1838, 1956, 2280 |
| Tru9I | TTAA | 8 cut(s) | 327, 906, 969, 1034, 1083, 1838, 1956, 2280 |
| TscAI | CASTG | 8 cut(s) | 528, 922, 952, 1501, 1666, 1789, 2278, 2368 |
| TseFI | GTSAC | 3 cut(s) | 947, 1481, 2269 |
| TseI | GCWGC | 4 cut(s) | 518, 692, 881, 2399 |
| Tsp45I | GTSAC | 3 cut(s) | 947, 1481, 2269 |
| TspDTI | ATGAA | 9 cut(s) | 91, 449, 600, 743, 876, 887, 953, 1088, 1305 |
| TspGWI | ACGGA | 2 cut(s) | 1136, 2007 |
| TspRI | CASTG | 8 cut(s) | 528, 922, 952, 1501, 1666, 1789, 2278, 2368 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 313, 1800 |
| Vha464I | CTTAAG | 1 cut(s) | 1837 |
| VneI | GTGCAC | 1 cut(s) | 913 |
| VpaK11BI | GGWCC | 2 cut(s) | 686, 2302 |
| VspI | ATTAAT | 1 cut(s) | 1083 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 134, 834, 1363 |
| XapI | RAATTY | 3 cut(s) | 319, 672, 1621 |
| XceI | RCATGY | 2 cut(s) | 206, 1445 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1128 |
| XspI | CTAG | 9 cut(s) | 159, 374, 612, 921, 1254, 1634, 1965, 2030, 2114 |
| ZrmI | AGTACT | 2 cut(s) | 218, 2155 |