Rw2G028630

disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
45941700 .. 45944576
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028630.1

Sequence Viewer

Length: 2877 bp
ATGGCTGAAGCACTTGTATCCTTCCTTGTAGAGCAGTTGGGTTCCATCATCTTCCAACAGGTGGAACAAAATGTGAGACTTGTTGTGAATGTCAAAAACGAAGTAGTAAACCTTACCCTCAACCTCGCAGCAATTCAAGCTGTGCTAGCAAATGCAGAGAGGAGGCAAGTCAAGGAGACTAAAGTGAGACGCTGGCTCGATAATCTAAAAGAAGTGTTGTACGAGATAGACGATGTTGTGGACGAGTGGAGCACTGAAATCCTGAAACAACAAATCAAGAAACAAGGTGACAATGCTATTGTACCTAAGAAGAAGGTATGTTTCTCTATTCCCTTCCATTGTCTTTGTAATGGCCAAGTCACTAAGATAATTTGTCGTGGTGACATTGCTGTGAGGATAAAAGAGTTGAATGAGAAGTTATCTTTGATTCATGAACAGAAAAATTTCTTTAAGTTTCTTCAAAATGAAATTGAATTTGAGCAACCTAAACCTGAACGATTGAAAATTTTTCCAATTGTCGCTGAATCTGGGACATTTGGTAGAGACGATGAAAGGAATAAACTAGTAAGCCAGTTAGTGAGTGAGAATAGTGAAGAAAGGAAGAAGCCTCTTGTCATATCTATTGTAGGTATGGGGGGGATAGGCAAAACAACTCTTGCCCAACTAGCCTATAATGATGAAAAAGTAAATGCTTGTTTTCATACAAGAATATGGGTTTGTGTCTCAGAACCCTTTGTACAAATTGCGGTTGCCAAAGCCATCCTTGAGGGTCTTGAAGTAACTGCCCCAAATTCAAATGAGTTGGAAACTTTTGTTCAACTTATATCTGACTCGATTAAGGGCAAGAAGTTCCTTCTTGTCCTAGATGATGTTTGGGACTCAGACCATAGAAAGTGGGAGCCCTTCTTGACAACATTAGGGTGTGGTGGCTCAGGGAGTAGAATTTTGGTTACAACGCGTATAGCGCAAGTTGCTACTACAATAGGAGCAACCAGTGACCGCACAATCCATTTAGCGGAGTTAGGTGAAGAAACTTGTCGGTCATTGTTCTATCATATTGCATTTTTTGATGGTGAAAGAAAAGAATCTAAAAAGTTTGAAGATATTGGCAATGAAATTGTAAAGAGGTGCAAAGGATTACCTCTTGCTGCGAAGACTTTGGGTAGTCTATTGCGGTATAAGGACACCATGCAACAATGGGCAGATGTTTTGAATAGTATGATATGGGAATTTGAGGAGGTTGAGCAACAAGTTTTCCAACTGTTATTTCTAAGTTACCATGATTTAGAACCACAGTTCAAACGTTGTCTGTTGTATTGTGCTACATTTCCTAAAGATCATGAGATTGTCAGGGATGAGTTGATTGAGTTGTGGATGTCACAAGATTATCTTAAAATGAAAGGGGGAAACAAAGAAGATAAAATAGTTGGTCAAAGGTGTTTTGAGAACTTAGTATTGCGGTCTTTTTTTCAAGATATTAAGAAAGATTATGAGGGGAATATTAAAAGTTGTAAAATGCACGACATCGTGCATGACTTTGTGCAATACCTGACCAAGGATGAATGTTTTAGTATGGTGGTTAAGGGTGCTAATGAGAGAATGGAGTTACCGGGTGATGAGGTCCGTCATTTGTCTTTAATGTTTGCACCCGAGGGTCCATTTCCTGTTTCTTCTCTCAACTGTAAGTGTTTGCGCACTCTCACAGCTTTTGAATCGAAACTTACTAGCATTAGCGTTGAGTTGATTTCGCAATCAGAAAGCCTTAGGACTTTGAATTTGAGTGAAAACTCGATTCGAGAAGTTCCAAAGGAGATTGTTGGATTGATACATTTGAGATATCTGGACTTGTCTCATAACGGTGAACTGAAGGAATTGCCCGACAGTTTATGTGATTTATACAATCTGCAAACCTTGCGACTTGTTGAGTGTAGTCAACTTGTCAAATTTCCCGATGAAGAGGCAATGAGAAAGCTAACCAAGTTAAAGCATCTTTATGTTGAGAATTCCCCTCGTCTAAAATCAAAAGGGATAGGGAGGTCAACTGGTCTGCAAAAGCTAGATGTGTTTCATCTAAATGGTTATATGGGTGAGGACAAAGAAGGGACGTTGAAGTTGCAAGATTTGAAAAACTTGAACCAACTTGAAGGGAGACTTGAAATTGCACACTTGGAGTCTGTGGAAGATGCGAGTGAGGGTGTAAATGCATGTTTGAGTGAGAAACATCTCCTTCAGCTAGATCTAAATTTCTTATGTTTCCAATGTAGTATGTGGTCGAGAGAAGAAGGGACGGGCCAAAATGATAGAGAAATACTGAATGGGCTGCAACCACATGGAGATTTGGAATCATTGGGCATCTGGAACTGTCAGCTGGCTACTTCTCCGTGTCCCAATTGGATCTTGTCTTTACATAATCTGACTAGTCTTCAGCTTGGGTACTTCGGTAATTGTGAGCTGCTTTCGGGTCCATTTGGGAGACTGCCGTCGCTTGAATCACTTGATGTTATGGGGATGGGGAAAGTGAAAAAGGTTGGAGTGGAGTTATTGGTGGGAATTGAAGAAAGAGAATTACAATCATCCTTCTCCTCGTCTTCCCTTATTTTATTCCCCAAATTGAAAAGCCTCCGGTTCGTTGGGATGGATGAGTGGCAAGAGTGGGGAGGGGATTTTCGGAATAATACTACCATAATGCCCTCCCTCTCTTACTTACTTTTTTATCGGTGCTGGAAACTTGGTACGCTGCCCAACTTCCTGCGCAAGACACCACTACAGAGTGTGACCATCGGGATGACTCCAATTCTGGGTAATAGAGTCCGGGACAAAACAAGTGAGGAGTGGGCCAAGATTTCACACGTCCCAGACATTAAATTTCAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

958

Amino Acids

109.15

Weight (kDa)

5.82

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 94 1.2e-20 Rx N-terminal domain
NB-ARC PF00931 184 - 355 4e-32 NB-ARC domain
WHD_DRP PF23559 443 - 514 1.6e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 564 - 905 3e-23 Leucine-rich repeat region
LRR_8 PF13855 572 - 619 9.9e-09 Leucine rich repeat
LRR_8 PF13855 587 - 642 2e-08 Leucine rich repeat
LRR_4 PF12799 587 - 626 7.3e-06 Leucine Rich repeats (2 copies)
LRR_R13L1-DRL21 PF25019 705 - 837 1.8e-22 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 1694, 2753
AccB7I CCANNNNNTGG 1 cut(s) 61
AccII CGCG 1 cut(s) 958
AciI CCGC 5 cut(s) 746, 1000, 1016, 1174, 1459
AclI AACGTT 1 cut(s) 1303
AclWI GGATC 1 cut(s) 2402
AcoI YGGCCR 1 cut(s) 352
AcuI CTGAAG 4 cut(s) 27, 1886, 2213, 2408
AfaI GTAC 5 cut(s) 221, 303, 738, 2435, 2734
AfiI CCNNNNNNNGG 4 cut(s) 61, 1015, 1555, 2798
AflIII ACRYGT 2 cut(s) 956, 2848
AhlI ACTAGT 2 cut(s) 562, 2417
AjiI CACGTC 1 cut(s) 2851
AjuI GAANNNNNNNTTGG 2 cut(s) 1251, 1283
AluBI AGCT 8 cut(s) 140, 1706, 1972, 2056, 2233, 2368, 2428, 2452
AluI AGCT 8 cut(s) 140, 1706, 1972, 2056, 2233, 2368, 2428, 2452
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 8 cut(s) 70, 170, 181, 537, 727, 1854, 2143, 2467
AlwI GGATC 1 cut(s) 2402
Ama87I CYCGRG 1 cut(s) 1649
AoxI GGCC 3 cut(s) 352, 2290, 2835
ApeKI GCWGC 5 cut(s) 128, 1148, 2320, 2452, 2737
ArsI GACNNNNNNTTYG 2 cut(s) 1759, 1791
Asp700I GAANNNNTTC 1 cut(s) 443
AspLEI GCGC 3 cut(s) 967, 1695, 2754
AspS9I GGNCC 5 cut(s) 1621, 1655, 2290, 2462, 2835
AsuC2I CCSGG 2 cut(s) 1611, 2813
AsuHPI GGTGA 7 cut(s) 299, 392, 1037, 1085, 1625, 1871, 2099
AsuNHI GCTAGC 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 1649
AvaII GGWCC 3 cut(s) 1621, 1655, 2462
AxyI CCTNAGG 1 cut(s) 1763
BaeI ACNNNNGTAYC 2 cut(s) 2425, 2458
BalI TGGCCA 1 cut(s) 354
BanII GRGCYC 1 cut(s) 903
BbsI GAAGAC 3 cut(s) 1160, 2414, 2580
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 5 cut(s) 140, 1135, 2307, 2439, 2724
BccI CCATC 6 cut(s) 53, 767, 1064, 2503, 2629, 2786
BceAI ACGGC 1 cut(s) 2464
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 2 cut(s) 1611, 2813
BcoDI GTCTC 8 cut(s) 70, 170, 181, 537, 727, 1854, 2143, 2467
BcuI ACTAGT 2 cut(s) 562, 2417
BfaI CTAG 8 cut(s) 146, 563, 665, 863, 1725, 2057, 2234, 2418
BfmI CTRYAG 1 cut(s) 2765
BfuI GTATCC 1 cut(s) 28
BglII AGATCT 1 cut(s) 2236
BisI GCNGC 5 cut(s) 129, 1149, 2321, 2453, 2738
BlsI GCNGC 5 cut(s) 130, 1150, 2322, 2454, 2739
Bme1390I CCNGG 2 cut(s) 1611, 2813
Bme18I GGWCC 3 cut(s) 1621, 1655, 2462
BmeT110I CYCGRG 1 cut(s) 1649
BmgBI CACGTC 1 cut(s) 2851
BmgT120I GGNCC 5 cut(s) 1621, 1655, 2290, 2462, 2835
BmiI GGNNCC 4 cut(s) 43, 900, 1656, 2463
BmrFI CCNGG 2 cut(s) 1611, 2813
BmsI GCATC 3 cut(s) 1996, 2173, 2361
BmtI GCTAGC 1 cut(s) 149
BoxI GACNNNNGTC 1 cut(s) 2479
BpiI GAAGAC 3 cut(s) 1160, 2414, 2580
Bpu10I CCTNAGC 1 cut(s) 931
BpuEI CTTGAG 1 cut(s) 785
BpuMI CCSGG 2 cut(s) 1611, 2813
BsaJI CCNNGG 2 cut(s) 1554, 1650
BsaWI WCCGGW 1 cut(s) 2622
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 1015, 1555, 2798
Bse1I ACTGG 3 cut(s) 571, 993, 2047
Bse21I CCTNAGG 1 cut(s) 1763
Bse3DI GCAATG 3 cut(s) 384, 1117, 1968
BseDI CCNNGG 2 cut(s) 1554, 1650
BseGI GGATG 9 cut(s) 759, 1360, 1380, 1564, 2514, 2573, 2640, 2644, 2790
BseLI CCNNNNNNNGG 4 cut(s) 61, 1015, 1555, 2798
BseMI GCAATG 3 cut(s) 384, 1117, 1968
BseMII CTCAG 3 cut(s) 738, 894, 945
BseNI ACTGG 3 cut(s) 571, 993, 2047
BseRI GAGGAG 4 cut(s) 175, 1250, 2572, 2843
BseXI GCAGC 5 cut(s) 140, 1135, 2307, 2439, 2724
Bsh1236I CGCG 1 cut(s) 958
BshFI GGCC 3 cut(s) 354, 2292, 2837
BsiHKAI GWGCWC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 1649
BsiSI CCGG 3 cut(s) 1610, 2623, 2812
BslFI GGGAC 7 cut(s) 544, 890, 2116, 2299, 2370, 2828, 2837
BslI CCNNNNNNNGG 4 cut(s) 61, 1015, 1555, 2798
BsmAI GTCTC 8 cut(s) 70, 170, 181, 537, 727, 1854, 2143, 2467
BsmBI CGTCTC 2 cut(s) 181, 537
BsmFI GGGAC 7 cut(s) 544, 890, 2116, 2299, 2370, 2828, 2837
BsnI GGCC 3 cut(s) 354, 2292, 2837
BsoBI CYCGRG 1 cut(s) 1649
Bsp1286I GDGCHC 2 cut(s) 254, 903
Bsp1407I TGTACA 1 cut(s) 736
Bsp143I GATC 3 cut(s) 1336, 2236, 2394
BspACI CCGC 5 cut(s) 746, 1000, 1016, 1174, 1459
BspANI GGCC 3 cut(s) 354, 2292, 2837
BspCNI CTCAG 3 cut(s) 737, 893, 944
BspFNI CGCG 1 cut(s) 958
BspHI TCATGA 2 cut(s) 430, 1339
BspLI GGNNCC 4 cut(s) 43, 900, 1656, 2463
BspOI GCTAGC 1 cut(s) 149
BspPI GGATC 1 cut(s) 2402
BsrDI GCAATG 3 cut(s) 384, 1117, 1968
BsrGI TGTACA 1 cut(s) 736
BsrI ACTGG 3 cut(s) 571, 993, 2047
BssECI CCNNGG 2 cut(s) 1554, 1650
BssMI GATC 3 cut(s) 1336, 2236, 2394
BssT1I CCWWGG 1 cut(s) 1554
Bst4CI ACNGT 6 cut(s) 1263, 1296, 1682, 1859, 1883, 2363
Bst6I CTCTTC 1 cut(s) 1950
BstAPI GCANNNNNTGC 1 cut(s) 1912
BstAUI TGTACA 1 cut(s) 736
BstC8I GCNNGC 3 cut(s) 147, 194, 2370
BstDEI CTNAG 8 cut(s) 306, 363, 724, 880, 931, 1271, 1450, 1763
BstENI CCTNNNNNAGG 1 cut(s) 1553
BstF5I GGATG 9 cut(s) 759, 1360, 1380, 1564, 2514, 2573, 2640, 2644, 2790
BstFNI CGCG 1 cut(s) 958
BstHHI GCGC 3 cut(s) 967, 1695, 2754
BstKTI GATC 3 cut(s) 1339, 2239, 2397
BstMAI GTCTC 8 cut(s) 70, 170, 181, 537, 727, 1854, 2143, 2467
BstMBI GATC 3 cut(s) 1336, 2236, 2394
BstMWI GCNNNNNNNGC 6 cut(s) 137, 146, 665, 964, 971, 1912
BstNSI RCATGY 1 cut(s) 2208
BstPAI GACNNNNGTC 1 cut(s) 2479
BstSCI CCNGG 2 cut(s) 1609, 2811
BstSFI CTRYAG 1 cut(s) 2765
BstUI CGCG 1 cut(s) 958
BstV1I GCAGC 5 cut(s) 140, 1135, 2307, 2439, 2724
BstV2I GAAGAC 3 cut(s) 1160, 2414, 2580
BstX2I RGATCY 2 cut(s) 2236, 2394
BstYI RGATCY 2 cut(s) 2236, 2394
Bsu36I CCTNAGG 1 cut(s) 1763
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 3 cut(s) 354, 2292, 2837
BtrI CACGTC 1 cut(s) 2851
BtsCI GGATG 9 cut(s) 759, 1360, 1380, 1564, 2514, 2573, 2640, 2644, 2790
BtsIMutI CAGTG 2 cut(s) 252, 1000
Cac8I GCNNGC 3 cut(s) 147, 194, 2370
CciI TCATGA 2 cut(s) 430, 1339
CfoI GCGC 3 cut(s) 967, 1695, 2754
Cfr13I GGNCC 5 cut(s) 1621, 1655, 2290, 2462, 2835
CseI GACGC 1 cut(s) 198
Csp6I GTAC 5 cut(s) 220, 302, 737, 2434, 2733
CviAII CATG 7 cut(s) 431, 1189, 1280, 1340, 1532, 2205, 2330
CviQI GTAC 5 cut(s) 220, 302, 737, 2434, 2733
DdeI CTNAG 8 cut(s) 306, 363, 724, 880, 931, 1271, 1450, 1763
DpnI GATC 3 cut(s) 1338, 2238, 2396
DpnII GATC 3 cut(s) 1336, 2236, 2394
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 1950
EarI CTCTTC 1 cut(s) 1950
Eco130I CCWWGG 1 cut(s) 1554
Eco24I GRGCYC 1 cut(s) 903
Eco32I GATATC 1 cut(s) 1838
Eco47I GGWCC 3 cut(s) 1621, 1655, 2462
Eco57I CTGAAG 4 cut(s) 27, 1886, 2213, 2408
Eco81I CCTNAGG 1 cut(s) 1763
Eco88I CYCGRG 1 cut(s) 1649
EcoNI CCTNNNNNAGG 1 cut(s) 1553
EcoRI GAATTC 1 cut(s) 2002
EcoRV GATATC 1 cut(s) 1838
EcoT14I CCWWGG 1 cut(s) 1554
EcoT22I ATGCAT 1 cut(s) 2206
EcoT38I GRGCYC 1 cut(s) 903
ErhI CCWWGG 1 cut(s) 1554
Esp3I CGTCTC 2 cut(s) 181, 537
FaeI CATG 7 cut(s) 434, 1192, 1283, 1343, 1535, 2208, 2333
FalI AAGNNNNNCTT 6 cut(s) 747, 779, 1374, 1406, 2136, 2168
FaqI GGGAC 7 cut(s) 544, 890, 2116, 2299, 2370, 2828, 2837
FatI CATG 7 cut(s) 430, 1188, 1279, 1339, 1531, 2204, 2329
Fnu4HI GCNGC 5 cut(s) 129, 1149, 2321, 2453, 2738
FokI GGATG 9 cut(s) 746, 1367, 1387, 1571, 2521, 2560, 2647, 2651, 2797
FriOI GRGCYC 1 cut(s) 903
Fsp4HI GCNGC 5 cut(s) 129, 1149, 2321, 2453, 2738
FspBI CTAG 8 cut(s) 146, 563, 665, 863, 1725, 2057, 2234, 2418
FspI TGCGCA 2 cut(s) 1694, 2753
GlaI GCGC 3 cut(s) 966, 1694, 2753
GluI GCNGC 5 cut(s) 129, 1149, 2321, 2453, 2738
HaeIII GGCC 3 cut(s) 354, 2292, 2837
HapII CCGG 3 cut(s) 1610, 2623, 2812
HgaI GACGC 1 cut(s) 198
HhaI GCGC 3 cut(s) 967, 1695, 2754
Hin1II CATG 7 cut(s) 434, 1192, 1283, 1343, 1535, 2208, 2333
Hin6I GCGC 3 cut(s) 965, 1693, 2752
HinP1I GCGC 3 cut(s) 965, 1693, 2752
HincII GTYRAC 2 cut(s) 1934, 2040
HindII GTYRAC 2 cut(s) 1934, 2040
HpaII CCGG 3 cut(s) 1610, 2623, 2812
HphI GGTGA 7 cut(s) 299, 392, 1037, 1085, 1625, 1871, 2099
Hpy166II GTNNAC 5 cut(s) 109, 241, 1862, 1934, 2040
Hpy188I TCNGA 6 cut(s) 727, 829, 883, 1756, 2415, 2670
Hpy8I GTNNAC 5 cut(s) 109, 241, 1862, 1934, 2040
Hpy99I CGWCG 1 cut(s) 2485
HpyCH4III ACNGT 6 cut(s) 1263, 1296, 1682, 1859, 1883, 2363
HpyCH4IV ACGT 3 cut(s) 1303, 2105, 2850
HpyF10VI GCNNNNNNNGC 6 cut(s) 137, 146, 665, 964, 971, 1912
HpyF3I CTNAG 8 cut(s) 306, 363, 724, 880, 931, 1271, 1450, 1763
HpySE526I ACGT 3 cut(s) 1303, 2105, 2850
Hsp92II CATG 7 cut(s) 434, 1192, 1283, 1343, 1535, 2208, 2333
HspAI GCGC 3 cut(s) 965, 1693, 2752
Kzo9I GATC 3 cut(s) 1336, 2236, 2394
LmnI GCTCC 3 cut(s) 249, 898, 986
Lsp1109I GCAGC 5 cut(s) 140, 1135, 2307, 2439, 2724
LweI GCATC 3 cut(s) 1996, 2173, 2361
MaeI CTAG 8 cut(s) 146, 563, 665, 863, 1725, 2057, 2234, 2418
MaeII ACGT 3 cut(s) 1303, 2105, 2850
MalI GATC 3 cut(s) 1338, 2238, 2396
MboI GATC 3 cut(s) 1336, 2236, 2394
MfeI CAATTG 3 cut(s) 513, 2389, 2870
MflI RGATCY 2 cut(s) 2236, 2394
MhlI GDGCHC 2 cut(s) 254, 903
MlsI TGGCCA 1 cut(s) 354
MluI ACGCGT 1 cut(s) 956
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 5 cut(s) 824, 872, 2180, 2782, 2817
MmeI TCCRAC 5 cut(s) 79, 783, 1282, 1798, 2509
Mox20I TGGCCA 1 cut(s) 354
Mph1103I ATGCAT 1 cut(s) 2206
MroXI GAANNNNTTC 1 cut(s) 443
MscI TGGCCA 1 cut(s) 354
MseI TTAA 9 cut(s) 450, 837, 1392, 1479, 1503, 1581, 1637, 1982, 2862
MslI CAYNNNNRTG 6 cut(s) 389, 919, 1857, 1992, 2073, 2783
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 2368
MspI CCGG 3 cut(s) 1610, 2623, 2812
MspR9I CCNGG 2 cut(s) 1611, 2813
MunI CAATTG 3 cut(s) 513, 2389, 2870
MvnI CGCG 1 cut(s) 958
MwoI GCNNNNNNNGC 6 cut(s) 137, 146, 665, 964, 971, 1912
NciI CCSGG 2 cut(s) 1611, 2813
NdeII GATC 3 cut(s) 1336, 2236, 2394
NheI GCTAGC 1 cut(s) 145
NlaIII CATG 7 cut(s) 434, 1192, 1283, 1343, 1535, 2208, 2333
NlaIV GGNNCC 4 cut(s) 43, 900, 1656, 2463
NmuCI GTSAC 6 cut(s) 287, 358, 380, 995, 1377, 2773
NsbI TGCGCA 2 cut(s) 1694, 2753
NsiI ATGCAT 1 cut(s) 2206
NspI RCATGY 1 cut(s) 2208
PagI TCATGA 2 cut(s) 430, 1339
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 443
PfeI GAWTC 7 cut(s) 427, 524, 1085, 1712, 1792, 2342, 2489
PflMI CCANNNNNTGG 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 2811
PkrI GCNGC 5 cut(s) 130, 1150, 2322, 2454, 2739
PleI GAGTC 5 cut(s) 824, 872, 2179, 2782, 2816
PpsI GAGTC 5 cut(s) 824, 872, 2179, 2782, 2816
PshAI GACNNNNGTC 1 cut(s) 2479
Psp1406I AACGTT 1 cut(s) 1303
PspN4I GGNNCC 4 cut(s) 43, 900, 1656, 2463
PspPI GGNCC 5 cut(s) 1621, 1655, 2290, 2462, 2835
PsrI GAACNNNNNNTAC 2 cut(s) 720, 752
PsuI RGATCY 2 cut(s) 2236, 2394
PvuII CAGCTG 1 cut(s) 2368
RsaI GTAC 5 cut(s) 221, 303, 738, 2435, 2734
RsaNI GTAC 5 cut(s) 220, 302, 737, 2434, 2733
RseI CAYNNNNRTG 6 cut(s) 389, 919, 1857, 1992, 2073, 2783
SaqAI TTAA 9 cut(s) 450, 837, 1392, 1479, 1503, 1581, 1637, 1982, 2862
SatI GCNGC 5 cut(s) 129, 1149, 2321, 2453, 2738
Sau3AI GATC 3 cut(s) 1336, 2236, 2394
Sau96I GGNCC 5 cut(s) 1621, 1655, 2290, 2462, 2835
SchI GAGTC 5 cut(s) 824, 872, 2180, 2782, 2817
ScrFI CCNGG 2 cut(s) 1611, 2813
SduI GDGCHC 2 cut(s) 254, 903
SfaNI GCATC 3 cut(s) 1996, 2173, 2361
SfcI CTRYAG 1 cut(s) 2765
SinI GGWCC 3 cut(s) 1621, 1655, 2462
SmiMI CAYNNNNRTG 6 cut(s) 389, 919, 1857, 1992, 2073, 2783
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
SpeI ACTAGT 2 cut(s) 562, 2417
SsiI CCGC 5 cut(s) 746, 1000, 1016, 1174, 1459
SspI AATATT 1 cut(s) 1501
SspMI CTAG 8 cut(s) 146, 563, 665, 863, 1725, 2057, 2234, 2418
StyD4I CCNGG 2 cut(s) 1609, 2811
StyI CCWWGG 1 cut(s) 1554
TaaI ACNGT 6 cut(s) 1263, 1296, 1682, 1859, 1883, 2363
TaiI ACGT 3 cut(s) 1306, 2108, 2853
TaqI TCGA 6 cut(s) 198, 833, 1715, 1790, 1795, 2273
TaqII GACCGA 1 cut(s) 1029
TatI WGTACW 1 cut(s) 736
TfiI GAWTC 7 cut(s) 427, 524, 1085, 1712, 1792, 2342, 2489
Tru1I TTAA 9 cut(s) 450, 837, 1392, 1479, 1503, 1581, 1637, 1982, 2862
Tru9I TTAA 9 cut(s) 450, 837, 1392, 1479, 1503, 1581, 1637, 1982, 2862
TscAI CASTG 2 cut(s) 259, 1000
TseFI GTSAC 6 cut(s) 287, 358, 380, 995, 1377, 2773
TseI GCWGC 5 cut(s) 128, 1148, 2320, 2452, 2737
Tsp45I GTSAC 6 cut(s) 287, 358, 380, 995, 1377, 2773
TspGWI ACGGA 2 cut(s) 1613, 2370
TspRI CASTG 2 cut(s) 259, 1000
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 3 cut(s) 1621, 1655, 2462
XagI CCTNNNNNAGG 1 cut(s) 1553
XceI RCATGY 1 cut(s) 2208
XmnI GAANNNNTTC 1 cut(s) 443
XspI CTAG 8 cut(s) 146, 563, 665, 863, 1725, 2057, 2234, 2418
Zsp2I ATGCAT 1 cut(s) 2206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.