Rorug02G0359900

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
45577028 .. 45581204
4177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0359900.1

Sequence Viewer

Length: 1674 bp
ATGGCACTTCCCTCCATAGCAAGAAGGCTACGAACTAAACACCCCCTCTGCCTATCACTCACTCTACTCCACCACCACCACCACCACCCCATCTCTAACTCATCCTATCCTTCACTTTCTCTCCACCACCATCTCCCTCGGCCATTTCATCCAACACTTATCGTCCCATCCCAAACCCCTCGCCATTTCTCTACTCTCCGACCCTTCTCCGCCGAAATCCCCCACCACCCATTGGGCTTCAATGGCCAGCGTTGCAAAACAGACCACTCCCACAACTTGGGTCTCACCCAGTTTCTTGAATTGCTCACAAGTACATCCGATTTGGCCTCTGAAGCCGACGCCATGGCTTTTCTCGACGAGTCGGGTGTCGAGGCGAAGCGAGATATGGTCTTTCAGGCGATTTGGGAGCTGAGGGGAGATTGGAAGTTGGCGTTTTTGGGTTTCAAATGGGGTGAGAAGTGGGGCTGTTGCGATGAAGAGGCGTGTAGTTTGATGGTTTGGGTTTTGGGGAGTCATAGAAAGTTTACTACTGCTTGGTGTTTGATACGGGACTTGAATCAGGCTTTGATTGATACGCGCCGTGCAATGCTTATAATGATTGATAGATATGCATCTGCAAATCATCCAAGTAAGGCCATTAAGACATTTCAGATAATGGAGAAGTTCAGGTTGAGCCCTGATCAAGAAGCATTCCACATCCTCTTGAATGCACTTTGTAAAAATGGAAACATGGATGAAGCTGAAGAATTCATGCTTGTAAGTAAGAAGTTCTTCCCACTGGAGGTCGAGGGCTTTAACATTGTTCTTAATGGGTGGTGTAACATATCTGTGGATGTATATCAAGCCAAGAGAGTTTGGAGAGAAATGTCAAAATACTGTATTACACCAGACGCAACTTCTTATACACACATGATTTCCTGCTTCTCAAAGGTTGGGAATCTTTTCGACTCCCTTAGACTATATGATGAAATGAAGAAAAGGGATTGGGTTCCTGGTCTCAAGGTTTACAATTCTTTAATTTATATACTAACCCGTGAAAATTGCTTTAAGGAAGCACTCAAAGTACTGGACAAAGTGAAAGAAATTGGTTTGCAGCCAGATGCTACCACCTATAACTCAATGATAGGTCCTTTATGTGAATCAAAGAAGCTAGAGGAGGCACAACAGATGCTGAGTTCTATGATAAATGATAACGTCAACCCAACCATAGAGACTTACCATGCATTTCTGCAGAGTCCAGGTTCAAAGGCAACTGTTGAGGTTCTTAATCGAATGAAGAAAGCTAATTTAGGTCCTAATGGCAATACCTTCCTTATGATTCTTGAAAAGTTCTTTATATTAGAACAACCTGGGAAGGCATTGGAGATTTGGAATGAAATGAAGAACTATGGAGTAGTGCCTGATTCCACACATTACACCTCTATGGTACAGGGGCTGGCAACTTGTGGGTTGTTAACGAAGGCCAAGGAACTTTTGGCTGAGATGACGTCAAATGGCTTTCCAGAAGATCCAAAGCTTAAGAAGCTCTTGAAGAAGCCAATTGGAGGTAGTGTTAAAGGGAAACGGAGAGTTAGACAAGTCAACCAAGCAAAAAGGATTAATCTAAAGCAAGACAGGGTTGTGAGATCGAGAAGTCCACGTCAGTCAAGAAAGAAGAAGACATCAAGTGAATAG

Protein Analysis

557

Amino Acids

63.63

Weight (kDa)

9.25

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 198 - 240 4.9e-07 PPR repeat family
PPR_1 PF12854 224 - 250 7.9e-06 PPR repeat
PPR_2 PF13041 264 - 310 4.8e-06 PPR repeat family
PPR_3 PF13812 284 - 341 6.1e-06 Pentatricopeptide repeat domain
PPR_long PF17177 299 - 425 5.1e-08 Pentacotripeptide-repeat region of PRORP
PPR PF01535 300 - 327 9.9e-06 PPR repeat
PPR_2 PF13041 334 - 379 6.9e-09 PPR repeat family
PPR_3 PF13812 354 - 411 8.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 363 - 394 8.8e-07 PPR repeat
PPR_2 PF13041 366 - 410 3e-08 PPR repeat family
PPR_2 PF13041 445 - 480 9.4e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
AatII GACGTC 1 cut(s) 1490
AccB7I CCANNNNNTGG 2 cut(s) 232, 277
AccII CGCG 1 cut(s) 577
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 1502
AcoI YGGCCR 2 cut(s) 140, 244
AcsI RAATTY 1 cut(s) 746
AcuI CTGAAG 2 cut(s) 351, 762
AcyI GRCGYC 2 cut(s) 339, 1487
AfaI GTAC 3 cut(s) 313, 1065, 1428
AfiI CCNNNNNNNGG 4 cut(s) 232, 277, 781, 1544
AflII CTTAAG 1 cut(s) 1517
AgsI TTSAA 8 cut(s) 241, 299, 445, 556, 706, 1245, 1325, 1531
AjiI CACGTC 1 cut(s) 1640
AjnI CCWGG 3 cut(s) 991, 1237, 1348
AluBI AGCT 6 cut(s) 409, 740, 1150, 1283, 1516, 1525
AluI AGCT 6 cut(s) 409, 740, 1150, 1283, 1516, 1525
Alw26I GTCTC 3 cut(s) 287, 1001, 1205
AlwI GGATC 1 cut(s) 1502
AlwNI CAGNNNCTG 2 cut(s) 1171, 1435
AoxI GGCC 5 cut(s) 140, 244, 324, 633, 1461
ApeKI GCWGC 1 cut(s) 1093
ApoI RAATTY 1 cut(s) 746
AseI ATTAAT 1 cut(s) 1599
Asp700I GAANNNNTTC 2 cut(s) 770, 941
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 2 cut(s) 1127, 1292
AsuHPI GGTGA 2 cut(s) 277, 464
AvaII GGWCC 2 cut(s) 1127, 1292
BalI TGGCCA 1 cut(s) 246
BanII GRGCYC 1 cut(s) 677
BbsI GAAGAC 1 cut(s) 1664
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 1105
BccI CCATC 4 cut(s) 98, 138, 175, 487
BceAI ACGGC 1 cut(s) 564
BciT130I CCWGG 3 cut(s) 993, 1239, 1350
BclI TGATCA 1 cut(s) 679
BcoDI GTCTC 3 cut(s) 287, 1001, 1205
BfaI CTAG 1 cut(s) 1151
BfmI CTRYAG 1 cut(s) 1229
BfrI CTTAAG 1 cut(s) 1517
BisI GCNGC 1 cut(s) 1094
BlsI GCNGC 1 cut(s) 1095
BmcAI AGTACT 1 cut(s) 1065
Bme1390I CCNGG 3 cut(s) 993, 1239, 1350
Bme18I GGWCC 2 cut(s) 1127, 1292
BmgBI CACGTC 1 cut(s) 1640
BmgT120I GGNCC 2 cut(s) 1127, 1292
BmiI GGNNCC 1 cut(s) 990
BmrFI CCNGG 3 cut(s) 993, 1239, 1350
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 3 cut(s) 620, 1090, 1158
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 1664
BpmI CTGGAG 1 cut(s) 800
Bpu10I CCTNAGC 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 983
BsaBI GATNNNNATC 2 cut(s) 610, 837
BsaHI GRCGYC 2 cut(s) 339, 1487
BsaI GGTCTC 2 cut(s) 287, 1001
BsaJI CCNNGG 4 cut(s) 137, 342, 1349, 1464
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 1536, 1566
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 277, 781, 1544
Bse1I ACTGG 3 cut(s) 289, 783, 1071
Bse3DI GCAATG 1 cut(s) 591
Bse8I GATNNNNATC 2 cut(s) 610, 837
BseBI CCWGG 3 cut(s) 993, 1239, 1350
BseDI CCNNGG 4 cut(s) 137, 342, 1349, 1464
BseGI GGATG 8 cut(s) 101, 148, 167, 314, 622, 696, 739, 838
BseJI GATNNNNATC 2 cut(s) 610, 837
BseLI CCNNNNNNNGG 4 cut(s) 232, 277, 781, 1544
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 3 cut(s) 401, 1163, 1470
BseNI ACTGG 3 cut(s) 289, 783, 1071
BseRI GAGGAG 1 cut(s) 1169
BseXI GCAGC 1 cut(s) 1105
Bsh1236I CGCG 1 cut(s) 577
BshFI GGCC 5 cut(s) 142, 246, 326, 635, 1463
BslFI GGGAC 2 cut(s) 149, 563
BslI CCNNNNNNNGG 4 cut(s) 232, 277, 781, 1544
BsmAI GTCTC 3 cut(s) 287, 1001, 1205
BsmFI GGGAC 2 cut(s) 149, 563
BsmI GAATGC 2 cut(s) 689, 712
BsnI GGCC 5 cut(s) 142, 246, 326, 635, 1463
Bso31I GGTCTC 2 cut(s) 287, 1001
Bsp1286I GDGCHC 1 cut(s) 677
Bsp143I GATC 3 cut(s) 679, 1507, 1625
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 1 cut(s) 210
BspANI GGCC 5 cut(s) 142, 246, 326, 635, 1463
BspCNI CTCAG 3 cut(s) 402, 1164, 1471
BspFNI CGCG 1 cut(s) 577
BspLI GGNNCC 1 cut(s) 990
BspMAI CTGCAG 1 cut(s) 1233
BspPI GGATC 1 cut(s) 1502
BspTI CTTAAG 1 cut(s) 1517
BspTNI GGTCTC 2 cut(s) 287, 1001
BsrDI GCAATG 1 cut(s) 591
BsrI ACTGG 3 cut(s) 289, 783, 1071
BssECI CCNNGG 4 cut(s) 137, 342, 1349, 1464
BssMI GATC 3 cut(s) 679, 1507, 1625
BssNI GRCGYC 2 cut(s) 339, 1487
BssT1I CCWWGG 2 cut(s) 342, 1464
Bst2UI CCWGG 3 cut(s) 993, 1239, 1350
Bst4CI ACNGT 2 cut(s) 878, 1255
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 2 cut(s) 339, 1487
BstAFI CTTAAG 1 cut(s) 1517
BstC8I GCNNGC 2 cut(s) 248, 1437
BstDEI CTNAG 4 cut(s) 410, 953, 1172, 1479
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 8 cut(s) 101, 148, 167, 314, 622, 696, 739, 838
BstFNI CGCG 1 cut(s) 577
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 3 cut(s) 682, 1510, 1628
BstMAI GTCTC 3 cut(s) 287, 1001, 1205
BstMBI GATC 3 cut(s) 679, 1507, 1625
BstMWI GCNNNNNNNGC 4 cut(s) 243, 252, 332, 1522
BstNI CCWGG 3 cut(s) 993, 1239, 1350
BstSCI CCNGG 3 cut(s) 991, 1237, 1348
BstSFI CTRYAG 1 cut(s) 1229
BstUI CGCG 1 cut(s) 577
BstV1I GCAGC 1 cut(s) 1105
BstV2I GAAGAC 1 cut(s) 1664
BstX2I RGATCY 1 cut(s) 1507
BstYI RGATCY 1 cut(s) 1507
BsuRI GGCC 5 cut(s) 142, 246, 326, 635, 1463
BtgI CCRYGG 1 cut(s) 342
BtgZI GCGATG 1 cut(s) 486
BtrI CACGTC 1 cut(s) 1640
BtsCI GGATG 8 cut(s) 101, 148, 167, 314, 622, 696, 739, 838
BtsIMutI CAGTG 1 cut(s) 776
Cac8I GCNNGC 2 cut(s) 248, 1437
CaiI CAGNNNCTG 2 cut(s) 1171, 1435
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 2 cut(s) 1127, 1292
CseI GACGC 2 cut(s) 347, 899
Csp6I GTAC 3 cut(s) 312, 1064, 1427
CviAII CATG 5 cut(s) 343, 730, 751, 910, 1220
CviQI GTAC 3 cut(s) 312, 1064, 1427
DdeI CTNAG 4 cut(s) 410, 953, 1172, 1479
DpnI GATC 3 cut(s) 681, 1509, 1627
DpnII GATC 3 cut(s) 679, 1507, 1625
EaeI YGGCCR 2 cut(s) 140, 244
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 342, 1464
Eco24I GRGCYC 1 cut(s) 677
Eco31I GGTCTC 2 cut(s) 287, 1001
Eco47I GGWCC 2 cut(s) 1127, 1292
Eco57I CTGAAG 2 cut(s) 351, 762
EcoO109I RGGNCCY 2 cut(s) 1127, 1292
EcoRI GAATTC 1 cut(s) 746
EcoRII CCWGG 3 cut(s) 991, 1237, 1348
EcoT14I CCWWGG 2 cut(s) 342, 1464
EcoT22I ATGCAT 2 cut(s) 613, 1225
EcoT38I GRGCYC 1 cut(s) 677
ErhI CCWWGG 2 cut(s) 342, 1464
FaeI CATG 5 cut(s) 346, 733, 754, 913, 1223
FalI AAGNNNNNCTT 4 cut(s) 755, 787, 1511, 1543
FaqI GGGAC 2 cut(s) 149, 563
FatI CATG 5 cut(s) 342, 729, 750, 909, 1219
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 1 cut(s) 1094
FokI GGATG 8 cut(s) 88, 135, 154, 301, 609, 683, 746, 845
FriOI GRGCYC 1 cut(s) 677
Fsp4HI GCNGC 1 cut(s) 1094
FspBI CTAG 1 cut(s) 1151
GlaI GCGC 1 cut(s) 578
GluI GCNGC 1 cut(s) 1094
GsuI CTGGAG 1 cut(s) 800
HaeIII GGCC 5 cut(s) 142, 246, 326, 635, 1463
HgaI GACGC 2 cut(s) 347, 899
HhaI GCGC 1 cut(s) 579
Hin1I GRCGYC 2 cut(s) 339, 1487
Hin1II CATG 5 cut(s) 346, 733, 754, 913, 1223
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 3 cut(s) 1198, 1455, 1582
HindII GTYRAC 3 cut(s) 1198, 1455, 1582
HindIII AAGCTT 1 cut(s) 1514
HinfI GANTC 9 cut(s) 359, 511, 556, 937, 947, 1139, 1234, 1318, 1403
HpaI GTTAAC 1 cut(s) 1455
HphI GGTGA 2 cut(s) 277, 464
Hpy166II GTNNAC 6 cut(s) 525, 1006, 1198, 1455, 1582, 1637
Hpy188I TCNGA 4 cut(s) 200, 319, 331, 651
Hpy188III TCNNGA 9 cut(s) 296, 353, 683, 703, 1322, 1502, 1528, 1629, 1647
Hpy8I GTNNAC 6 cut(s) 525, 1006, 1198, 1455, 1582, 1637
Hpy99I CGWCG 2 cut(s) 341, 359
HpyAV CCTTC 6 cut(s) 18, 120, 214, 1318, 1348, 1453
HpyCH4III ACNGT 2 cut(s) 878, 1255
HpyCH4IV ACGT 3 cut(s) 1194, 1487, 1639
HpyCH4V TGCA 8 cut(s) 255, 584, 611, 617, 710, 1093, 1223, 1231
HpyF10VI GCNNNNNNNGC 4 cut(s) 243, 252, 332, 1522
HpyF3I CTNAG 4 cut(s) 410, 953, 1172, 1479
HpySE526I ACGT 3 cut(s) 1194, 1487, 1639
Hsp92I GRCGYC 2 cut(s) 339, 1487
Hsp92II CATG 5 cut(s) 346, 733, 754, 913, 1223
HspAI GCGC 1 cut(s) 577
Ksp22I TGATCA 1 cut(s) 679
KspAI GTTAAC 1 cut(s) 1455
Kzo9I GATC 3 cut(s) 679, 1507, 1625
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 1 cut(s) 1105
LweI GCATC 3 cut(s) 620, 1090, 1158
MaeI CTAG 1 cut(s) 1151
MaeII ACGT 3 cut(s) 1194, 1487, 1639
MaeIII GTNAC 1 cut(s) 818
MalI GATC 3 cut(s) 681, 1509, 1627
MboI GATC 3 cut(s) 679, 1507, 1625
MfeI CAATTG 1 cut(s) 1539
MflI RGATCY 1 cut(s) 1507
MhlI GDGCHC 1 cut(s) 677
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 8 cut(s) 299, 746, 1009, 1017, 1039, 1083, 1285, 1539
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 4 cut(s) 368, 520, 941, 1243
MmeI TCCRAC 2 cut(s) 176, 223
Mox20I TGGCCA 1 cut(s) 246
Mph1103I ATGCAT 2 cut(s) 613, 1225
MroXI GAANNNNTTC 2 cut(s) 770, 941
MscI TGGCCA 1 cut(s) 246
MslI CAYNNNNRTG 2 cut(s) 827, 1421
Msp20I TGGCCA 1 cut(s) 246
MspCI CTTAAG 1 cut(s) 1517
MspR9I CCNGG 3 cut(s) 993, 1239, 1350
MunI CAATTG 1 cut(s) 1539
Mva1269I GAATGC 2 cut(s) 689, 712
MvaI CCWGG 3 cut(s) 993, 1239, 1350
MvnI CGCG 1 cut(s) 577
MwoI GCNNNNNNNGC 4 cut(s) 243, 252, 332, 1522
NcoI CCATGG 1 cut(s) 342
NdeII GATC 3 cut(s) 679, 1507, 1625
NlaIII CATG 5 cut(s) 346, 733, 754, 913, 1223
NlaIV GGNNCC 1 cut(s) 990
NmeAIII GCCGAG 1 cut(s) 118
NsiI ATGCAT 2 cut(s) 613, 1225
PctI GAATGC 2 cut(s) 689, 712
PdmI GAANNNNTTC 2 cut(s) 770, 941
PfeI GAWTC 5 cut(s) 556, 937, 1139, 1318, 1403
PflMI CCANNNNNTGG 2 cut(s) 232, 277
PkrI GCNGC 1 cut(s) 1095
PleI GAGTC 4 cut(s) 367, 519, 941, 1242
PpsI GAGTC 4 cut(s) 367, 519, 941, 1242
PpuMI RGGWCCY 2 cut(s) 1127, 1292
PshBI ATTAAT 1 cut(s) 1599
PsiI TTATAA 1 cut(s) 593
Psp5II RGGWCCY 2 cut(s) 1127, 1292
Psp6I CCWGG 3 cut(s) 991, 1237, 1348
PspGI CCWGG 3 cut(s) 991, 1237, 1348
PspN4I GGNNCC 1 cut(s) 990
PspPI GGNCC 2 cut(s) 1127, 1292
PspPPI RGGWCCY 2 cut(s) 1127, 1292
PstI CTGCAG 1 cut(s) 1233
PstNI CAGNNNCTG 2 cut(s) 1171, 1435
PsuI RGATCY 1 cut(s) 1507
RsaI GTAC 3 cut(s) 313, 1065, 1428
RsaNI GTAC 3 cut(s) 312, 1064, 1427
RseI CAYNNNNRTG 2 cut(s) 827, 1421
SatI GCNGC 1 cut(s) 1094
Sau3AI GATC 3 cut(s) 679, 1507, 1625
Sau96I GGNCC 2 cut(s) 1127, 1292
ScaI AGTACT 1 cut(s) 1065
SchI GAGTC 4 cut(s) 368, 520, 941, 1243
ScrFI CCNGG 3 cut(s) 993, 1239, 1350
SduI GDGCHC 1 cut(s) 677
SfaNI GCATC 3 cut(s) 620, 1090, 1158
SfcI CTRYAG 1 cut(s) 1229
SinI GGWCC 2 cut(s) 1127, 1292
SmiMI CAYNNNNRTG 2 cut(s) 827, 1421
SmlI CTYRAG 2 cut(s) 998, 1517
SmoI CTYRAG 2 cut(s) 998, 1517
Sse9I AATT 8 cut(s) 299, 746, 1009, 1017, 1039, 1083, 1285, 1539
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 1151
StyD4I CCNGG 3 cut(s) 991, 1237, 1348
StyI CCWWGG 2 cut(s) 342, 1464
TaaI ACNGT 2 cut(s) 878, 1255
TaiI ACGT 3 cut(s) 1197, 1490, 1642
TaqI TCGA 6 cut(s) 354, 369, 786, 945, 1270, 1628
TasI AATT 8 cut(s) 299, 746, 1009, 1017, 1039, 1083, 1285, 1539
TatI WGTACW 2 cut(s) 311, 1063
TfiI GAWTC 5 cut(s) 556, 937, 1139, 1318, 1403
TscAI CASTG 1 cut(s) 783
TseI GCWGC 1 cut(s) 1093
TspDTI ATGAA 9 cut(s) 137, 489, 739, 750, 981, 986, 1289, 1389, 1394
TspGWI ACGGA 1 cut(s) 1579
TspRI CASTG 1 cut(s) 783
Van91I CCANNNNNTGG 2 cut(s) 232, 277
Vha464I CTTAAG 1 cut(s) 1517
VpaK11BI GGWCC 2 cut(s) 1127, 1292
VspI ATTAAT 1 cut(s) 1599
XapI RAATTY 1 cut(s) 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 1471
XmnI GAANNNNTTC 2 cut(s) 770, 941
XspI CTAG 1 cut(s) 1151
ZraI GACGTC 1 cut(s) 1488
ZrmI AGTACT 1 cut(s) 1065
Zsp2I ATGCAT 2 cut(s) 613, 1225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.