RchiOBHm_Chr7g0231671

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000018
Physical Location & Seq
Reverse (-)
55332722 .. 55335640
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20763

Sequence Viewer

Length: 2919 bp
ATGGCCGAGGCACTCGTCAACCTTCTTGTTGAAAAATTGGGTTCAGTTGTTTACCACCATACAAGTGAAGGGGTGAAACTGGTTTTGAAGGCTAAGAAGGAAGTTGACAAGTTCAGAAGCACCCTCAAACTTATCCAGAATGTGCTTCACGATGCGGAGAAGAAGCAAGTGGAGGATCCAGCTGTGAGAGACTGGTTGGATCAGCTCAAAGACCTGACGTACAAGATGGATGACGTACTCGACGCTTGGAACACTGAAATTGGGAAACGAGAAGCTGAGAAACAAGAAACACAAGGTTCTGATGTGGAGGTACGTTTCTCATTTCGTTCCAATTGCTTTTGTCTTGCTCGATTGAATGAGGTAACTCGTCGTTATAAGATTGGTAGTGCAATAAAAGATCTGAATGAAGAGTTAACTCAGATTTACATTGACAAAAACAAGTATAGCCTTCAACCCACCATGCATGCTGCTGCAGTTAATGCTGAACAACCTAATCCACGATCTTTAACTTCATCTCTCGTTGATATATCGACCATATTTGGGCGACAAGTTGAAAAAGAGAGGCTGGTGAGTGAGTTGTTAAGGGAAGGGAGGCCCGGCCTTGTCATCCCCATTGTAGGGATGGGAGGATTGGGGAAAACAACTGTGGCCCAATTAGTCTTTAACGATGCACGAGTTCAAGCCCATTTTGATATCAAAGCATGGGTTTGTGTCTCGGACCCTTTCGATGTCATCAAGATTGCAAAAGCAATCTTTAGGCAACTCGGTGGTACTCAAGTTACTTCAGACGAGTTGCAAACGATATTAGCTGGTATTCAGAATCTCGTCAAGGGACAAGAGGATGAAAAAGAAGAGAAAAAGGATGAAAAGGAAAAGAAGATCCTTCTTGTCCTTGACGATGTGTGGACAGAAGACCACAGAGAGTGGGATAGTTTAAAATTACCAGTATTAATGCAAAGTTGTGCTGAAGGCAGTAGAATTGTGGTGACCACTCGAAAGCAGGAGGTTGCTCGAATTATGAGAGCAACCAGTGACATGATCAATTTGGAAAGGTTGAGTCATCTGGATTCCTTGAAACTATTCAATAGTATTGCATTTCTGGATAGGGAAGAAGATAAGTCCAACAAGTGGTATGGAGATATTGCTGAGAAAATTGTTAGAAAATGTGACGGTTTGCCTTTGGCTTTGAAGACTTTAGGAAGTCTCCTATTGCATAGGCAGACAATCAGAGAATGGGAAGAAGTTCTCAACAGTGAGATATGGAATGTAAAAGTTGTCCAAGAAGAAGTTTTTCGACCATTATTACTCAGTTATTATGATTTGGCTATGGAGGTTAAGAGTTGCCTTCTGTATTGTGCTACTTATCCTAAAGGTTTTGAGTTCGGCAAAGAAATTCTTATCGAGCAGTGGATGTCACAAGGCTATTTGAATGTTGGAGAAAACGAAGAAGAGGCAACAAAAGGTAGAGAAGTTTTTACTAAGTTAGCAATGCTATGTTTCTTACAAGTTTTCAGGCAAGATGCACTTACCAAGGAAATTAGAGGCTGCAAGATGCATGATACTGTGCATGATTTTATACAATATCTTAACCAAAATGAGTGTCTTACTGTGGAGGCTACGGGTACCCATGGAACAGAGACATCGAGTGCAAATCATAGGGTTCGCCATTTGACCTTAATGTCAGCACCCGAGGGTCCAATTCCATCTTTGATATCAAAATTAGCGAATAGCAAAATTTTACGTACCCTAGCAACTTTTGATTCAAGAATTACAGCCATTGACTCGGATTTGATTTCACAGTTGAAACGTCTCAGGAGTTTGAATTTGAGTCGCAACAACATTCATCAGTTGCCAGAGGAGATTGGTGATTTGATACATTTGAGATATCTTGATTTGTCTAGGAATGGTAATTTGAGGAGATTACCCGACAACGTTTGTAACTTGTACAATCTGCAAACCTTGAGGCTTGCTTACTGCTTGAGCCTTGAAAAGTTACCCGACAATATGGGGAAGTTGATTAACTTGAAGCACCTTCATGTTAAGGATTGTGGTCGGCTTCAGTGCTTACCAAAAGGGATTGGAAGTATAAGGAATTTGCGAACAGTAGACGGGAGGCCATCTGTTTATTGTAATGACGATGCCGAAGCATTCAAATTTGGAGATCTGAGAATGATGAATCAGCTTCGCCGTCTTGACATCCGTATCTCAAGGGTCGGGGAAAATGCGGCAAGTGAGGCCGAGAAAGCAGAATTGAATCAAAAAGTTCATCTTTCTTATTTACGTCTTATTGTGTGGAACCTCAGCGGCAACGACGCAGATGCTGCAGTAATGAATGCCTTGCGACCACATGAAAATTTGGACTCTTTGGCAATTTGGTTGTATCATGGCCCCACCTGGCCAAATTGGATGACGACTTCGTATTTAACCAGATTGACTGTCTTTCATCTTTGTTACCGCCACTCCTCTGTTTTGCCTCCTCTCGGGAAACTGCCGTCCCTTAAAGTAGTAAAGCTACATTGGGTGCTTGATCTGGAAGAGATCGGAGCTGAATTTTACGGAGTAGAAGAAGAAACATCATCCTTCCCAAGTTTGGAAACACTCTATCTTGGCGGCTTGCCGAGTTTAGCAAAGTGGGAATTAGGTGGAAAGGCAGAGAGTTCTTCTAATTCCCAAATGAAATCAATTTCAATAATGCCACGCCTTTCTTCCTTGCATGTTGTGGAGTGTCCTAAACTAAAACAACTGCCAGACTTCCTCCTGCAAAATGCACGACTGCAGAATCTTCTCATCAAATATTGTCAGAGCCTTCCTGCCAGCCTTCCTGACGAGTTCATCTCTCGCATCCCAAACGTCACAATTGAATATTCGGGAGTTGATCCCCTTTTCAAAGGAAGAAAAATAGATACTGTAAAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

972

Amino Acids

110.61

Weight (kDa)

6.69

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 95 1.4e-21 Rx N-terminal domain
NB-ARC PF00931 184 - 367 1.8e-32 NB-ARC domain
WHD_DRP PF23559 455 - 526 2.4e-15 Disease resistance protein Winged helix domain
LRR_14 PF23598 580 - 870 2.4e-32 Leucine-rich repeat region
LRR_8 PF13855 587 - 635 6.4e-09 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 721 - 839 2.9e-21 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AasI GACNNNNNNGTC 1 cut(s) 1678
Acc65I GGTACC 1 cut(s) 1622
AccB1I GGYRCC 1 cut(s) 1622
AccB7I CCANNNNNTGG 1 cut(s) 1128
AccI GTMKAC 1 cut(s) 2106
AciI CCGC 5 cut(s) 155, 2225, 2304, 2455, 2610
AclI AACGTT 1 cut(s) 1932
AclWI GGATC 5 cut(s) 170, 183, 207, 874, 2870
AcoI YGGCCR 2 cut(s) 3, 2396
AcsI RAATTY 7 cut(s) 1392, 1734, 1822, 2092, 2153, 2353, 2549
AcuI CTGAAG 3 cut(s) 768, 987, 2042
AfaI GTAC 7 cut(s) 221, 237, 312, 772, 1624, 1744, 1946
AfiI CCNNNNNNNGG 6 cut(s) 540, 617, 618, 1128, 2480, 2590
AjnI CCWGG 1 cut(s) 2393
AluBI AGCT 7 cut(s) 182, 205, 275, 809, 2182, 2512, 2546
AluI AGCT 7 cut(s) 182, 205, 275, 809, 2182, 2512, 2546
Alw26I GTCTC 5 cut(s) 183, 718, 1208, 1631, 1814
AlwI GGATC 5 cut(s) 170, 183, 207, 874, 2870
AlwNI CAGNNNCTG 1 cut(s) 2321
Ama87I CYCGRG 2 cut(s) 1688, 2480
AoxI GGCC 8 cut(s) 3, 593, 598, 648, 2114, 2235, 2386, 2396
ApeKI GCWGC 4 cut(s) 467, 470, 1545, 2321
ApoI RAATTY 7 cut(s) 1392, 1734, 1822, 2092, 2153, 2353, 2549
ArsI GACNNNNNNTTYG 2 cut(s) 1585, 1617
AseI ATTAAT 1 cut(s) 950
Asp700I GAANNNNTTC 3 cut(s) 1079, 1242, 1290
Asp718I GGTACC 1 cut(s) 1622
AspS9I GGNCC 5 cut(s) 594, 649, 718, 1694, 2387
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 4 cut(s) 85, 580, 997, 1877
AvaI CYCGRG 2 cut(s) 1688, 2480
AvaII GGWCC 2 cut(s) 718, 1694
BaeI ACNNNNGTAYC 4 cut(s) 762, 795, 2185, 2218
BalI TGGCCA 1 cut(s) 2398
BamHI GGATCC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 1622
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 2 cut(s) 918, 1196
BbvCI CCTCAGC 1 cut(s) 2300
BbvI GCAGC 4 cut(s) 454, 457, 1532, 2308
BccI CCATC 4 cut(s) 220, 616, 1711, 2125
BceAI ACGGC 2 cut(s) 2172, 2476
BcgI CGANNNNNNTGC 2 cut(s) 2300, 2334
BciT130I CCWGG 1 cut(s) 2395
BclI TGATCA 1 cut(s) 1038
BcnI CCSGG 1 cut(s) 597
BcoDI GTCTC 5 cut(s) 183, 718, 1208, 1631, 1814
BfaI CTAG 2 cut(s) 1748, 1899
BfmI CTRYAG 3 cut(s) 471, 2322, 2774
BglII AGATCT 2 cut(s) 397, 2161
BisI GCNGC 7 cut(s) 468, 471, 1546, 2226, 2305, 2322, 2611
BlsI GCNGC 7 cut(s) 469, 472, 1547, 2227, 2306, 2323, 2612
Bme1390I CCNGG 2 cut(s) 597, 2395
Bme18I GGWCC 2 cut(s) 718, 1694
BmeT110I CYCGRG 2 cut(s) 1688, 2480
BmgT120I GGNCC 5 cut(s) 594, 649, 718, 1694, 2387
BmiI GGNNCC 6 cut(s) 177, 720, 1624, 1695, 2297, 2389
BmrFI CCNGG 2 cut(s) 597, 2395
BmsI GCATC 7 cut(s) 142, 658, 1510, 1542, 2128, 2308, 2850
BpiI GAAGAC 2 cut(s) 918, 1196
BplI GAGNNNNNCTC 2 cut(s) 2819, 2851
Bpu10I CCTNAGC 1 cut(s) 2300
BpuEI CTTGAG 4 cut(s) 759, 1981, 1999, 2191
BpuMI CCSGG 1 cut(s) 597
BsaAI YACGTR 1 cut(s) 1742
BsaJI CCNNGG 4 cut(s) 6, 1530, 1627, 1689
BsaXI ACNNNNNCTCC 2 cut(s) 2444, 2474
Bsc4I CCNNNNNNNGG 6 cut(s) 540, 617, 618, 1128, 2480, 2590
Bse1I ACTGG 4 cut(s) 84, 197, 944, 1029
Bse3DI GCAATG 1 cut(s) 1494
BseBI CCWGG 1 cut(s) 2395
BseDI CCNNGG 4 cut(s) 6, 1530, 1627, 1689
BseLI CCNNNNNNNGG 6 cut(s) 540, 617, 618, 1128, 2480, 2590
BseMI GCAATG 1 cut(s) 1494
BseMII CTCAG 7 cut(s) 267, 431, 1137, 1321, 1825, 2156, 2314
BseNI ACTGG 4 cut(s) 84, 197, 944, 1029
BseRI GAGGAG 4 cut(s) 1871, 1930, 2452, 2466
BseXI GCAGC 4 cut(s) 454, 457, 1532, 2308
BshFI GGCC 8 cut(s) 5, 595, 600, 650, 2116, 2237, 2388, 2398
BshNI GGYRCC 1 cut(s) 1622
BsiHKCI CYCGRG 2 cut(s) 1688, 2480
BsiSI CCGG 1 cut(s) 597
BslFI GGGAC 2 cut(s) 846, 2479
BslI CCNNNNNNNGG 6 cut(s) 540, 617, 618, 1128, 2480, 2590
BsmAI GTCTC 5 cut(s) 183, 718, 1208, 1631, 1814
BsmBI CGTCTC 1 cut(s) 1814
BsmFI GGGAC 2 cut(s) 846, 2479
BsmI GAATGC 2 cut(s) 2147, 2338
BsnI GGCC 8 cut(s) 5, 595, 600, 650, 2116, 2237, 2388, 2398
BsoBI CYCGRG 2 cut(s) 1688, 2480
Bsp1407I TGTACA 1 cut(s) 1944
Bsp19I CCATGG 1 cut(s) 1627
BspACI CCGC 5 cut(s) 155, 2225, 2304, 2455, 2610
BspANI GGCC 8 cut(s) 5, 595, 600, 650, 2116, 2237, 2388, 2398
BspCNI CTCAG 7 cut(s) 268, 430, 1138, 1320, 1824, 2157, 2313
BspLI GGNNCC 6 cut(s) 177, 720, 1624, 1695, 2297, 2389
BspMAI CTGCAG 3 cut(s) 475, 2326, 2778
BspPI GGATC 5 cut(s) 170, 183, 207, 874, 2870
BspT107I GGYRCC 1 cut(s) 1622
BsrDI GCAATG 1 cut(s) 1494
BsrGI TGTACA 1 cut(s) 1944
BsrI ACTGG 4 cut(s) 84, 197, 944, 1029
BssECI CCNNGG 4 cut(s) 6, 1530, 1627, 1689
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 2 cut(s) 1530, 1627
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 1 cut(s) 2395
Bst4CI ACNGT 9 cut(s) 646, 1172, 1253, 1564, 1609, 1800, 2104, 2437, 2908
Bst6I CTCTTC 4 cut(s) 402, 846, 1443, 2529
BstAPI GCANNNNNTGC 2 cut(s) 479, 2321
BstAUI TGTACA 1 cut(s) 1944
BstBAI YACGTR 1 cut(s) 1742
BstC8I GCNNGC 4 cut(s) 465, 1968, 2615, 2815
BstDEI CTNAG 9 cut(s) 93, 276, 417, 1146, 1307, 1479, 1811, 2165, 2300
BstDSI CCRYGG 1 cut(s) 1627
BstEII GGTNACC 1 cut(s) 985
BstMAI GTCTC 5 cut(s) 183, 718, 1208, 1631, 1814
BstMWI GCNNNNNNNGC 4 cut(s) 479, 2234, 2243, 2321
BstNI CCWGG 1 cut(s) 2395
BstNSI RCATGY 2 cut(s) 467, 2717
BstPI GGTNACC 1 cut(s) 985
BstSCI CCNGG 2 cut(s) 595, 2393
BstSFI CTRYAG 3 cut(s) 471, 2322, 2774
BstSNI TACGTA 1 cut(s) 1742
BstV1I GCAGC 4 cut(s) 454, 457, 1532, 2308
BstV2I GAAGAC 2 cut(s) 918, 1196
BstX2I RGATCY 4 cut(s) 175, 397, 879, 2161
BstYI RGATCY 4 cut(s) 175, 397, 879, 2161
BsuRI GGCC 8 cut(s) 5, 595, 600, 650, 2116, 2237, 2388, 2398
BtgI CCRYGG 1 cut(s) 1627
BtsI GCAGTG 1 cut(s) 1412
BtsIMutI CAGTG 5 cut(s) 252, 1036, 1258, 1412, 2066
Cac8I GCNNGC 4 cut(s) 465, 1968, 2615, 2815
CaiI CAGNNNCTG 1 cut(s) 2321
Cfr13I GGNCC 5 cut(s) 594, 649, 718, 1694, 2387
CseI GACGC 2 cut(s) 251, 2321
Csp6I GTAC 7 cut(s) 220, 236, 311, 771, 1623, 1743, 1945
CviQI GTAC 7 cut(s) 220, 236, 311, 771, 1623, 1743, 1945
DdeI CTNAG 9 cut(s) 93, 276, 417, 1146, 1307, 1479, 1811, 2165, 2300
DraI TTTAAA 1 cut(s) 936
DrdI GACNNNNNNGTC 1 cut(s) 1678
DseDI GACNNNNNNGTC 1 cut(s) 1678
EaeI YGGCCR 2 cut(s) 3, 2396
Eam1104I CTCTTC 4 cut(s) 402, 846, 1443, 2529
EarI CTCTTC 4 cut(s) 402, 846, 1443, 2529
Eco105I TACGTA 1 cut(s) 1742
Eco130I CCWWGG 2 cut(s) 1530, 1627
Eco32I GATATC 3 cut(s) 694, 1713, 1886
Eco47I GGWCC 2 cut(s) 718, 1694
Eco57I CTGAAG 3 cut(s) 768, 987, 2042
Eco88I CYCGRG 2 cut(s) 1688, 2480
Eco91I GGTNACC 1 cut(s) 985
EcoO65I GGTNACC 1 cut(s) 985
EcoRII CCWGG 1 cut(s) 2393
EcoRV GATATC 3 cut(s) 694, 1713, 1886
EcoT14I CCWWGG 2 cut(s) 1530, 1627
EcoT22I ATGCAT 2 cut(s) 465, 1557
ErhI CCWWGG 2 cut(s) 1530, 1627
Esp3I CGTCTC 1 cut(s) 1814
FalI AAGNNNNNCTT 6 cut(s) 1380, 1412, 1509, 1541, 2253, 2285
FaqI GGGAC 2 cut(s) 846, 2479
FbaI TGATCA 1 cut(s) 1038
FblI GTMKAC 1 cut(s) 2106
Fnu4HI GCNGC 7 cut(s) 468, 471, 1546, 2226, 2305, 2322, 2611
Fsp4HI GCNGC 7 cut(s) 468, 471, 1546, 2226, 2305, 2322, 2611
FspBI CTAG 2 cut(s) 1748, 1899
GluI GCNGC 7 cut(s) 468, 471, 1546, 2226, 2305, 2322, 2611
HaeIII GGCC 8 cut(s) 5, 595, 600, 650, 2116, 2237, 2388, 2398
HapII CCGG 1 cut(s) 597
HgaI GACGC 2 cut(s) 251, 2321
HincII GTYRAC 3 cut(s) 19, 106, 414
HindII GTYRAC 3 cut(s) 19, 106, 414
HpaI GTTAAC 1 cut(s) 414
HpaII CCGG 1 cut(s) 597
HphI GGTGA 4 cut(s) 85, 580, 997, 1877
Hpy166II GTNNAC 6 cut(s) 19, 52, 106, 414, 906, 2107
Hpy8I GTNNAC 6 cut(s) 19, 52, 106, 414, 906, 2107
Hpy99I CGWCG 3 cut(s) 245, 372, 2315
HpyCH4III ACNGT 9 cut(s) 646, 1172, 1253, 1564, 1609, 1800, 2104, 2437, 2908
HpyCH4IV ACGT 8 cut(s) 218, 234, 313, 1741, 1807, 1932, 2281, 2850
HpyF10VI GCNNNNNNNGC 4 cut(s) 479, 2234, 2243, 2321
HpyF3I CTNAG 9 cut(s) 93, 276, 417, 1146, 1307, 1479, 1811, 2165, 2300
HpySE526I ACGT 8 cut(s) 218, 234, 313, 1741, 1807, 1932, 2281, 2850
KpnI GGTACC 1 cut(s) 1626
Ksp22I TGATCA 1 cut(s) 1038
KspAI GTTAAC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 2543
Lsp1109I GCAGC 4 cut(s) 454, 457, 1532, 2308
LweI GCATC 7 cut(s) 142, 658, 1510, 1542, 2128, 2308, 2850
MaeI CTAG 2 cut(s) 1748, 1899
MaeII ACGT 8 cut(s) 218, 234, 313, 1741, 1807, 1932, 2281, 2850
MfeI CAATTG 2 cut(s) 331, 2856
MflI RGATCY 4 cut(s) 175, 397, 879, 2161
MlsI TGGCCA 1 cut(s) 2398
MluNI TGGCCA 1 cut(s) 2398
MlyI GAGTC 4 cut(s) 1066, 1775, 1837, 2354
MmeI TCCRAC 3 cut(s) 177, 1146, 1414
Mox20I TGGCCA 1 cut(s) 2398
Mph1103I ATGCAT 2 cut(s) 465, 1557
MroXI GAANNNNTTC 3 cut(s) 1079, 1242, 1290
MscI TGGCCA 1 cut(s) 2398
MslI CAYNNNNRTG 2 cut(s) 63, 2034
Msp20I TGGCCA 1 cut(s) 2398
MspA1I CMGCKG 2 cut(s) 182, 2304
MspI CCGG 1 cut(s) 597
MspR9I CCNGG 2 cut(s) 597, 2395
MunI CAATTG 2 cut(s) 331, 2856
Mva1269I GAATGC 2 cut(s) 2147, 2338
MvaI CCWGG 1 cut(s) 2395
MwoI GCNNNNNNNGC 4 cut(s) 479, 2234, 2243, 2321
NciI CCSGG 1 cut(s) 597
NcoI CCATGG 1 cut(s) 1627
NlaIV GGNNCC 6 cut(s) 177, 720, 1624, 1695, 2297, 2389
NmeAIII GCCGAG 3 cut(s) 31, 2263, 2643
NmuCI GTSAC 5 cut(s) 985, 1031, 1166, 1413, 2851
NsiI ATGCAT 2 cut(s) 465, 1557
NspI RCATGY 2 cut(s) 467, 2717
PaeI GCATGC 1 cut(s) 467
PctI GAATGC 2 cut(s) 2147, 2338
PdmI GAANNNNTTC 3 cut(s) 1079, 1242, 1290
PfeI GAWTC 6 cut(s) 820, 1067, 1760, 2176, 2254, 2779
PflMI CCANNNNNTGG 1 cut(s) 1128
PkrI GCNGC 7 cut(s) 469, 472, 1547, 2227, 2306, 2323, 2612
PleI GAGTC 4 cut(s) 1065, 1775, 1836, 2354
PpsI GAGTC 4 cut(s) 1065, 1775, 1836, 2354
Ppu21I YACGTR 1 cut(s) 1742
PshBI ATTAAT 1 cut(s) 950
PsiI TTATAA 1 cut(s) 375
Psp1406I AACGTT 1 cut(s) 1932
Psp6I CCWGG 1 cut(s) 2393
PspEI GGTNACC 1 cut(s) 985
PspGI CCWGG 1 cut(s) 2393
PspN4I GGNNCC 6 cut(s) 177, 720, 1624, 1695, 2297, 2389
PspPI GGNCC 5 cut(s) 594, 649, 718, 1694, 2387
PstI CTGCAG 3 cut(s) 475, 2326, 2778
PstNI CAGNNNCTG 1 cut(s) 2321
PsuI RGATCY 4 cut(s) 175, 397, 879, 2161
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 7 cut(s) 221, 237, 312, 772, 1624, 1744, 1946
RsaNI GTAC 7 cut(s) 220, 236, 311, 771, 1623, 1743, 1945
RseI CAYNNNNRTG 2 cut(s) 63, 2034
SatI GCNGC 7 cut(s) 468, 471, 1546, 2226, 2305, 2322, 2611
Sau96I GGNCC 5 cut(s) 594, 649, 718, 1694, 2387
SchI GAGTC 4 cut(s) 1066, 1775, 1837, 2354
ScrFI CCNGG 2 cut(s) 597, 2395
SfaNI GCATC 7 cut(s) 142, 658, 1510, 1542, 2128, 2308, 2850
SfcI CTRYAG 3 cut(s) 471, 2322, 2774
SinI GGWCC 2 cut(s) 718, 1694
SmiMI CAYNNNNRTG 2 cut(s) 63, 2034
SmlI CTYRAG 4 cut(s) 774, 1960, 1978, 2206
SmoI CTYRAG 4 cut(s) 774, 1960, 1978, 2206
SnaBI TACGTA 1 cut(s) 1742
SphI GCATGC 1 cut(s) 467
SsiI CCGC 5 cut(s) 155, 2225, 2304, 2455, 2610
SspI AATATT 2 cut(s) 2795, 2864
SspMI CTAG 2 cut(s) 1748, 1899
StyD4I CCNGG 2 cut(s) 595, 2393
StyI CCWWGG 2 cut(s) 1530, 1627
TaaI ACNGT 9 cut(s) 646, 1172, 1253, 1564, 1609, 1800, 2104, 2437, 2908
TaiI ACGT 8 cut(s) 221, 237, 316, 1744, 1810, 1935, 2284, 2853
TaqI TCGA 9 cut(s) 240, 349, 530, 726, 994, 1012, 1294, 1401, 1643
TatI WGTACW 1 cut(s) 1944
TauI GCSGC 3 cut(s) 2228, 2307, 2613
TfiI GAWTC 6 cut(s) 820, 1067, 1760, 2176, 2254, 2779
TscAI CASTG 5 cut(s) 259, 1036, 1258, 1412, 2066
TseFI GTSAC 5 cut(s) 985, 1031, 1166, 1413, 2851
TseI GCWGC 4 cut(s) 467, 470, 1545, 2321
Tsp45I GTSAC 5 cut(s) 985, 1031, 1166, 1413, 2851
TspGWI ACGGA 2 cut(s) 2189, 2571
TspRI CASTG 5 cut(s) 259, 1036, 1258, 1412, 2066
Van91I CCANNNNNTGG 1 cut(s) 1128
VpaK11BI GGWCC 2 cut(s) 718, 1694
VspI ATTAAT 1 cut(s) 950
XapI RAATTY 7 cut(s) 1392, 1734, 1822, 2092, 2153, 2353, 2549
XceI RCATGY 2 cut(s) 467, 2717
XcmI CCANNNNNNNNNTGG 1 cut(s) 619
XmiI GTMKAC 1 cut(s) 2106
XmnI GAANNNNTTC 3 cut(s) 1079, 1242, 1290
XspI CTAG 2 cut(s) 1748, 1899
Zsp2I ATGCAT 2 cut(s) 465, 1557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.