RchiOBHm_Chr7g0231911

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000018
Physical Location & Seq
Reverse (-)
55726416 .. 55734639
8224 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20784

Sequence Viewer

Length: 2136 bp
ATGGCCGAGGCACTCGTCAACCTCCTTGTTGAACAATTGGGTTCAGTTGTTTACCACCACACAAGTGAAGGGGTGAAACTGGTTTTGAAAGCGAAGAAGGACGTTGACAAGTTCAGACGCACCCTCAAACGTATCCAGAAGGTGCTTCACGATGCTGAGAAGAAGCAAGTGTCGGATCCCGCGGTGAGAGACTGGTTGGATGAGCTCAAAGACGTGTCGTACAAGATGGATGACGTGCTGGACGCTTGGAACACTGAAATTGGGAAACGAGAAGCTGAGAAACAAGAAACACAAGGTTCTGACGTGGAGGTACGTTTCTCATTTCGTTCCAATTGCTTTTGTCTTGCCCGATTGAATGAGGTAACTCGTCGTTATAAGATTGGTAGTGCAATAAAAGATCTGAATGAAGAGTTGACTCAGATTGACGTTAACAAAAACAAGTTTAGCTTTCAATCCACCATGCTTCCTGTTAATGTAGAACAACCTAATCCACGGCCTATAACTTCATCTTTCGTCGATGTATCGACCATAGTTGGGCGGGATGTTGAAAAAGAAAGTTTGGTGAGAGAGTTGTTAGGGAAGGGGAGGCCCGGCCTTGTCATCCCCATTGTAGGGATGGGAGGATTGGGGAAAACAACTTTTACCCAATTAGTCTTCAAGGATGCACGAGTTCAATCCCATTTTGATATCAAAGCATGGGTTTGTGTCTCAGACCCTTTTGATGTCATCAAGATTGCAAAAGAAATCCTTGAACATGTCGGTGGAATAAAATCTCAAGATAGTTCAAATTTGTTGGATAAATTATTAGAAAACATCGAAAGACATATCAAGGAAGAGAGGTTTCTCCTCGTTTTAGATGATGTGTGGACAGAAAACCAAACAGAGTGGGAGAGGTTGAGTTTACCACTACTAATGCAAAGCTGTTCTGAAGGCAGTAGAATTCTGGTGACCACTCGAAAGCAGGAGGTTGCTCGAATGATGAGAGCAACTAGGGACATGATCACTTTGGGGAAGTTGAGTTATTTAGATTCTTTGGACCTATTCAATAGTATTGCATTTCTGGATAGGGAACAAGATAAGTCCAACAAGGTGTTTGGAGATATTGTTGAGAAAATTGTTAGCAAATGTGACGGTTTGCCTCTGGTTCTGAAGACTTTAGGCAGTCTCCTATTGCATAAGCTGACAATTAGAGAATGGGAAGAAGTTCTCAACAGTGAGATATGGAAGGTAAAAGTGGTTCAAGAAGAAGTTTTTCGACCATTACTACTCAGTTATTATGATTTGGCTCTAGAGATTAAGAGTTGCCTTCTGTATTGTGCTACTTATCCCAAAGATTTTGAGTTCAACAAGGAAATTCTTATCGAGCAATGGATGTCACAAGGCTATCTGAATGTTGGAGAAAACAAAGAAGAGGCAACACAAGGTAGAGAAGTTTTTACCAAGTTAGTAATGCGATGTTTCTTTCAAGATTTCATACAACATACACTTACCAAGGAAATTATAGGCTGCAAAATGCATGATACTGTGCATGATTTTGTACAATATCTTACCCAGAATGAGTGTCTTACTATGGAGGCTACGGGTACCCATGGAACAGAGACATCGAGTGCAAATGACAGGGTTCGCCATTTGACCTTAATGTCAGCACCCGAGGGTCCATTTCCATCGTTTATATCAAACTTAGTGAATAGCAAAATTTTGCGTACCCTGGCGACTTTTGATTCAAGTATTACTGCCATAGACTCGAATTTGATTTCACAGTTGAAATGCCTGAGGACCTTGAATTTGAGTGACACCAACATCCAGCAGTTGCCGGAGGAGATTGGTGATTTGACACATTTGAGATATCTTGATTTGACTCGTAATAATAATTTGACGAGATTACCTGACGGCGTGTGTAACTTGTACAATTTGCAAACTTTGAGGCTTGATGACTGCGACCTTGAAGAGTTGCCGGACAATATGGGGAAGTTGATTAACTTGAAGCACCTTCATGTTAATTGTGGGCTGAAGTACTTACCAAAAGGGATTAGGCGTATAAGGAATTTGCGAACACTAGACGGGAGCCCATCTGTTCGTTGTAGTGAAGATGCTGAAGGATTGACATTAGGAGATGAATCAGCTTCGCCGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

711

Amino Acids

81.05

Weight (kDa)

5.69

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 95 6.3e-22 Rx N-terminal domain
NB-ARC PF00931 183 - 354 1.8e-35 NB-ARC domain
WHD_DRP PF23559 442 - 513 2.8e-18 Disease resistance protein Winged helix domain
LRR_14 PF23598 559 - 620 7.1e-08 Leucine-rich repeat region
LRR_14 PF23598 567 - 691 1.1e-20 Leucine-rich repeat region
LRR_8 PF13855 574 - 623 3.9e-07 Leucine rich repeat
LRR_4 PF12799 591 - 629 2e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AasI GACNNNNNNGTC 1 cut(s) 1639
Acc65I GGTACC 1 cut(s) 1583
AccB1I GGYRCC 1 cut(s) 1583
AccII CGCG 1 cut(s) 182
AciI CCGC 3 cut(s) 180, 182, 538
AclWI GGATC 2 cut(s) 170, 183
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 7 cut(s) 787, 939, 1353, 1695, 1747, 1783, 2044
AcuI CTGAAG 4 cut(s) 948, 1169, 2030, 2115
AfaI GTAC 7 cut(s) 221, 312, 1539, 1585, 1705, 1907, 2015
AfiI CCNNNNNNNGG 3 cut(s) 534, 611, 612
AflIII ACRYGT 2 cut(s) 213, 754
AjiI CACGTC 3 cut(s) 214, 235, 304
AjnI CCWGG 1 cut(s) 1707
AleI CACNNNNGTG 1 cut(s) 63
AluBI AGCT 6 cut(s) 205, 275, 447, 921, 1180, 2123
AluI AGCT 6 cut(s) 205, 275, 447, 921, 1180, 2123
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 4 cut(s) 183, 712, 1169, 1592
AlwI GGATC 2 cut(s) 170, 183
Ama87I CYCGRG 1 cut(s) 1649
AoxI GGCC 4 cut(s) 3, 494, 587, 592
ApeKI GCWGC 1 cut(s) 1506
ApoI RAATTY 7 cut(s) 787, 939, 1353, 1695, 1747, 1783, 2044
ArsI GACNNNNNNTTYG 2 cut(s) 1768, 1800
Asp700I GAANNNNTTC 2 cut(s) 1203, 1251
Asp718I GGTACC 1 cut(s) 1583
AspS9I GGNCC 4 cut(s) 588, 1036, 1655, 1776
AsuC2I CCSGG 1 cut(s) 591
AsuHPI GGTGA 5 cut(s) 85, 196, 574, 958, 1838
AvaI CYCGRG 1 cut(s) 1649
AvaII GGWCC 3 cut(s) 1036, 1655, 1776
AxyI CCTNAGG 1 cut(s) 1772
BamHI GGATCC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 1583
BanII GRGCYC 2 cut(s) 207, 2069
BauI CACGAG 1 cut(s) 666
BbsI GAAGAC 2 cut(s) 646, 1157
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 1493
BccI CCATC 4 cut(s) 220, 610, 1672, 2077
BceAI ACGGC 3 cut(s) 509, 1906, 2113
BciT130I CCWGG 1 cut(s) 1709
BciVI GTATCC 1 cut(s) 143
BclI TGATCA 1 cut(s) 999
BcnI CCSGG 1 cut(s) 591
BcoDI GTCTC 4 cut(s) 183, 712, 1169, 1592
BfaI CTAG 3 cut(s) 990, 1289, 2057
BfuI GTATCC 1 cut(s) 143
BglII AGATCT 1 cut(s) 397
BisI GCNGC 1 cut(s) 1507
BlsI GCNGC 1 cut(s) 1508
BmcAI AGTACT 1 cut(s) 2015
Bme1390I CCNGG 2 cut(s) 591, 1709
Bme18I GGWCC 3 cut(s) 1036, 1655, 1776
BmeT110I CYCGRG 1 cut(s) 1649
BmgBI CACGTC 3 cut(s) 214, 235, 304
BmgT120I GGNCC 4 cut(s) 588, 1036, 1655, 1776
BmiI GGNNCC 4 cut(s) 177, 1585, 1656, 2066
BmrFI CCNGG 2 cut(s) 591, 1709
BmsI GCATC 3 cut(s) 142, 652, 2080
BpiI GAAGAC 2 cut(s) 646, 1157
BpuEI CTTGAG 1 cut(s) 759
BpuMI CCSGG 1 cut(s) 591
BsaJI CCNNGG 7 cut(s) 6, 180, 491, 1491, 1588, 1650, 1707
BsaXI ACNNNNNCTCC 2 cut(s) 1089, 1119
Bsc4I CCNNNNNNNGG 3 cut(s) 534, 611, 612
Bse1I ACTGG 2 cut(s) 84, 197
Bse21I CCTNAGG 1 cut(s) 1772
Bse3DI GCAATG 1 cut(s) 1373
BseBI CCWGG 1 cut(s) 1709
BseDI CCNNGG 7 cut(s) 6, 180, 491, 1491, 1588, 1650, 1707
BseGI GGATG 8 cut(s) 205, 235, 547, 600, 621, 667, 1377, 1800
BseLI CCNNNNNNNGG 3 cut(s) 534, 611, 612
BseMI GCAATG 1 cut(s) 1373
BseMII CTCAG 6 cut(s) 147, 267, 431, 723, 1282, 1763
BseNI ACTGG 2 cut(s) 84, 197
BseRI GAGGAG 2 cut(s) 836, 1832
BseXI GCAGC 1 cut(s) 1493
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 4 cut(s) 5, 496, 589, 594
BshNI GGYRCC 1 cut(s) 1583
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 1649
BsiSI CCGG 3 cut(s) 591, 1814, 1955
BslFI GGGAC 1 cut(s) 1007
BslI CCNNNNNNNGG 3 cut(s) 534, 611, 612
BsmAI GTCTC 4 cut(s) 183, 712, 1169, 1592
BsmFI GGGAC 1 cut(s) 1007
BsnI GGCC 4 cut(s) 5, 496, 589, 594
BsoBI CYCGRG 1 cut(s) 1649
Bsp1286I GDGCHC 2 cut(s) 207, 2069
Bsp1407I TGTACA 2 cut(s) 1537, 1905
Bsp143I GATC 3 cut(s) 175, 397, 999
Bsp19I CCATGG 1 cut(s) 1588
BspACI CCGC 3 cut(s) 180, 182, 538
BspANI GGCC 4 cut(s) 5, 496, 589, 594
BspCNI CTCAG 6 cut(s) 148, 268, 430, 722, 1281, 1764
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 4 cut(s) 177, 1585, 1656, 2066
BspPI GGATC 2 cut(s) 170, 183
BspT107I GGYRCC 1 cut(s) 1583
BsrDI GCAATG 1 cut(s) 1373
BsrGI TGTACA 2 cut(s) 1537, 1905
BsrI ACTGG 2 cut(s) 84, 197
BssECI CCNNGG 7 cut(s) 6, 180, 491, 1491, 1588, 1650, 1707
BssMI GATC 3 cut(s) 175, 397, 999
BssSI CACGAG 1 cut(s) 666
BssT1I CCWWGG 2 cut(s) 1491, 1588
Bst2BI CACGAG 1 cut(s) 666
Bst2UI CCWGG 1 cut(s) 1709
Bst4CI ACNGT 4 cut(s) 1133, 1214, 1525, 1761
Bst6I CTCTTC 4 cut(s) 402, 828, 1404, 1941
BstAUI TGTACA 2 cut(s) 1537, 1905
BstDEI CTNAG 7 cut(s) 156, 276, 417, 709, 1268, 1681, 1772
BstDSI CCRYGG 3 cut(s) 180, 491, 1588
BstEII GGTNACC 1 cut(s) 946
BstF5I GGATG 8 cut(s) 205, 235, 547, 600, 621, 667, 1377, 1800
BstFNI CGCG 1 cut(s) 182
BstKTI GATC 3 cut(s) 178, 400, 1002
BstMAI GTCTC 4 cut(s) 183, 712, 1169, 1592
BstMBI GATC 3 cut(s) 175, 397, 999
BstNI CCWGG 1 cut(s) 1709
BstNSI RCATGY 1 cut(s) 758
BstPI GGTNACC 1 cut(s) 946
BstSCI CCNGG 2 cut(s) 589, 1707
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 1493
BstV2I GAAGAC 2 cut(s) 646, 1157
BstX2I RGATCY 2 cut(s) 175, 397
BstYI RGATCY 2 cut(s) 175, 397
Bsu36I CCTNAGG 1 cut(s) 1772
BsuI GTATCC 1 cut(s) 143
BsuRI GGCC 4 cut(s) 5, 496, 589, 594
BtgI CCRYGG 3 cut(s) 180, 491, 1588
BtgZI GCGATG 1 cut(s) 1468
BtrI CACGTC 3 cut(s) 214, 235, 304
BtsCI GGATG 8 cut(s) 205, 235, 547, 600, 621, 667, 1377, 1800
BtsIMutI CAGTG 2 cut(s) 252, 1219
Cfr13I GGNCC 4 cut(s) 588, 1036, 1655, 1776
Cfr42I CCGCGG 1 cut(s) 183
CseI GACGC 2 cut(s) 126, 251
Csp6I GTAC 7 cut(s) 220, 311, 1538, 1584, 1704, 1906, 2014
CspCI CAANNNNNGTGG 2 cut(s) 866, 901
CviAII CATG 8 cut(s) 460, 696, 755, 997, 1517, 1529, 1589, 1994
CviQI GTAC 7 cut(s) 220, 311, 1538, 1584, 1704, 1906, 2014
DdeI CTNAG 7 cut(s) 156, 276, 417, 709, 1268, 1681, 1772
DpnI GATC 3 cut(s) 177, 399, 1001
DpnII GATC 3 cut(s) 175, 397, 999
DrdI GACNNNNNNGTC 1 cut(s) 1639
DseDI GACNNNNNNGTC 1 cut(s) 1639
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 402, 828, 1404, 1941
EarI CTCTTC 4 cut(s) 402, 828, 1404, 1941
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 1491, 1588
Eco24I GRGCYC 2 cut(s) 207, 2069
Eco32I GATATC 2 cut(s) 688, 1847
Eco47I GGWCC 3 cut(s) 1036, 1655, 1776
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 4 cut(s) 948, 1169, 2030, 2115
Eco81I CCTNAGG 1 cut(s) 1772
Eco88I CYCGRG 1 cut(s) 1649
Eco91I GGTNACC 1 cut(s) 946
EcoICRI GAGCTC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 1776
EcoO65I GGTNACC 1 cut(s) 946
EcoRI GAATTC 1 cut(s) 939
EcoRII CCWGG 1 cut(s) 1707
EcoRV GATATC 2 cut(s) 688, 1847
EcoT14I CCWWGG 2 cut(s) 1491, 1588
EcoT22I ATGCAT 1 cut(s) 1518
EcoT38I GRGCYC 2 cut(s) 207, 2069
ErhI CCWWGG 2 cut(s) 1491, 1588
FaeI CATG 8 cut(s) 463, 699, 758, 1000, 1520, 1532, 1592, 1997
FalI AAGNNNNNCTT 4 cut(s) 431, 463, 732, 764
FaqI GGGAC 1 cut(s) 1007
FatI CATG 8 cut(s) 459, 695, 754, 996, 1516, 1528, 1588, 1993
FauI CCCGC 2 cut(s) 187, 531
FbaI TGATCA 1 cut(s) 999
Fnu4HI GCNGC 1 cut(s) 1507
FokI GGATG 8 cut(s) 212, 242, 554, 587, 628, 674, 1384, 1787
FriOI GRGCYC 2 cut(s) 207, 2069
Fsp4HI GCNGC 1 cut(s) 1507
FspBI CTAG 3 cut(s) 990, 1289, 2057
GluI GCNGC 1 cut(s) 1507
HaeIII GGCC 4 cut(s) 5, 496, 589, 594
HapII CCGG 3 cut(s) 591, 1814, 1955
HgaI GACGC 2 cut(s) 126, 251
Hin1II CATG 8 cut(s) 463, 699, 758, 1000, 1520, 1532, 1592, 1997
HincII GTYRAC 4 cut(s) 19, 106, 414, 430
HindII GTYRAC 4 cut(s) 19, 106, 414, 430
HinfI GANTC 6 cut(s) 415, 1028, 1721, 1742, 1858, 2117
HpaI GTTAAC 1 cut(s) 430
HpaII CCGG 3 cut(s) 591, 1814, 1955
HphI GGTGA 5 cut(s) 85, 196, 574, 958, 1838
Hpy166II GTNNAC 7 cut(s) 19, 52, 106, 414, 430, 867, 902
Hpy188I TCNGA 9 cut(s) 116, 175, 301, 402, 420, 712, 928, 1149, 1389
Hpy8I GTNNAC 7 cut(s) 19, 52, 106, 414, 430, 867, 902
Hpy99I CGWCG 2 cut(s) 372, 518
HpyAV CCTTC 9 cut(s) 62, 91, 133, 574, 923, 1219, 1316, 2000, 2090
HpyCH4III ACNGT 4 cut(s) 1133, 1214, 1525, 1761
HpyCH4IV ACGT 7 cut(s) 102, 130, 213, 234, 303, 313, 426
HpyF3I CTNAG 7 cut(s) 156, 276, 417, 709, 1268, 1681, 1772
HpySE526I ACGT 7 cut(s) 102, 130, 213, 234, 303, 313, 426
Hsp92II CATG 8 cut(s) 463, 699, 758, 1000, 1520, 1532, 1592, 1997
KpnI GGTACC 1 cut(s) 1587
Ksp22I TGATCA 1 cut(s) 999
KspAI GTTAAC 1 cut(s) 430
KspI CCGCGG 1 cut(s) 183
Kzo9I GATC 3 cut(s) 175, 397, 999
LmnI GCTCC 1 cut(s) 2064
Lsp1109I GCAGC 1 cut(s) 1493
LweI GCATC 3 cut(s) 142, 652, 2080
MaeI CTAG 3 cut(s) 990, 1289, 2057
MaeII ACGT 7 cut(s) 102, 130, 213, 234, 303, 313, 426
MaeIII GTNAC 6 cut(s) 361, 946, 1127, 1374, 1790, 1898
MalI GATC 3 cut(s) 177, 399, 1001
MboI GATC 3 cut(s) 175, 397, 999
MfeI CAATTG 2 cut(s) 35, 331
MflI RGATCY 2 cut(s) 175, 397
MhlI GDGCHC 2 cut(s) 207, 2069
MlyI GAGTC 3 cut(s) 409, 1736, 1852
MmeI TCCRAC 5 cut(s) 153, 177, 774, 1107, 1375
Mph1103I ATGCAT 1 cut(s) 1518
MroXI GAANNNNTTC 2 cut(s) 1203, 1251
MseI TTAA 6 cut(s) 429, 471, 1296, 1637, 1977, 1998
MslI CAYNNNNRTG 3 cut(s) 63, 759, 1992
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 3 cut(s) 591, 1814, 1955
MspR9I CCNGG 2 cut(s) 591, 1709
MunI CAATTG 2 cut(s) 35, 331
MvaI CCWGG 1 cut(s) 1709
MvnI CGCG 1 cut(s) 182
NciI CCSGG 1 cut(s) 591
NcoI CCATGG 1 cut(s) 1588
NdeII GATC 3 cut(s) 175, 397, 999
NlaIII CATG 8 cut(s) 463, 699, 758, 1000, 1520, 1532, 1592, 1997
NlaIV GGNNCC 4 cut(s) 177, 1585, 1656, 2066
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 4 cut(s) 946, 1127, 1374, 1790
NsiI ATGCAT 1 cut(s) 1518
NspI RCATGY 1 cut(s) 758
OliI CACNNNNGTG 1 cut(s) 63
PciI ACATGT 1 cut(s) 754
PdmI GAANNNNTTC 2 cut(s) 1203, 1251
PfeI GAWTC 3 cut(s) 1028, 1721, 2117
PkrI GCNGC 1 cut(s) 1508
PleI GAGTC 3 cut(s) 409, 1736, 1852
PpsI GAGTC 3 cut(s) 409, 1736, 1852
PpuMI RGGWCCY 1 cut(s) 1776
PscI ACATGT 1 cut(s) 754
PsiI TTATAA 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 1776
Psp6I CCWGG 1 cut(s) 1707
PspEI GGTNACC 1 cut(s) 946
PspGI CCWGG 1 cut(s) 1707
PspN4I GGNNCC 4 cut(s) 177, 1585, 1656, 2066
PspPI GGNCC 4 cut(s) 588, 1036, 1655, 1776
PspPPI RGGWCCY 1 cut(s) 1776
PsrI GAACNNNNNNTAC 2 cut(s) 1221, 1253
PsuI RGATCY 2 cut(s) 175, 397
RsaI GTAC 7 cut(s) 221, 312, 1539, 1585, 1705, 1907, 2015
RsaNI GTAC 7 cut(s) 220, 311, 1538, 1584, 1704, 1906, 2014
RseI CAYNNNNRTG 3 cut(s) 63, 759, 1992
SacI GAGCTC 1 cut(s) 207
SacII CCGCGG 1 cut(s) 183
SaqAI TTAA 6 cut(s) 429, 471, 1296, 1637, 1977, 1998
SatI GCNGC 1 cut(s) 1507
Sau3AI GATC 3 cut(s) 175, 397, 999
Sau96I GGNCC 4 cut(s) 588, 1036, 1655, 1776
ScaI AGTACT 1 cut(s) 2015
SchI GAGTC 3 cut(s) 409, 1736, 1852
ScrFI CCNGG 2 cut(s) 591, 1709
SduI GDGCHC 2 cut(s) 207, 2069
SfaNI GCATC 3 cut(s) 142, 652, 2080
Sfr303I CCGCGG 1 cut(s) 183
SgrBI CCGCGG 1 cut(s) 183
SinI GGWCC 3 cut(s) 1036, 1655, 1776
SmiMI CAYNNNNRTG 3 cut(s) 63, 759, 1992
SmlI CTYRAG 1 cut(s) 774
SmoI CTYRAG 1 cut(s) 774
SsiI CCGC 3 cut(s) 180, 182, 538
SspMI CTAG 3 cut(s) 990, 1289, 2057
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 589, 1707
StyI CCWWGG 2 cut(s) 1491, 1588
TaaI ACNGT 4 cut(s) 1133, 1214, 1525, 1761
TaiI ACGT 7 cut(s) 105, 133, 216, 237, 306, 316, 429
TaqI TCGA 9 cut(s) 516, 524, 816, 955, 973, 1255, 1362, 1604, 1745
TatI WGTACW 3 cut(s) 1537, 1905, 2013
TfiI GAWTC 3 cut(s) 1028, 1721, 2117
Tru1I TTAA 6 cut(s) 429, 471, 1296, 1637, 1977, 1998
Tru9I TTAA 6 cut(s) 429, 471, 1296, 1637, 1977, 1998
TscAI CASTG 2 cut(s) 259, 1219
TseFI GTSAC 4 cut(s) 946, 1127, 1374, 1790
TseI GCWGC 1 cut(s) 1506
Tsp45I GTSAC 4 cut(s) 946, 1127, 1374, 1790
TspDTI ATGAA 5 cut(s) 420, 495, 1462, 1982, 2130
TspRI CASTG 2 cut(s) 259, 1219
VpaK11BI GGWCC 3 cut(s) 1036, 1655, 1776
XapI RAATTY 7 cut(s) 787, 939, 1353, 1695, 1747, 1783, 2044
XbaI TCTAGA 1 cut(s) 1288
XceI RCATGY 1 cut(s) 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmnI GAANNNNTTC 2 cut(s) 1203, 1251
XspI CTAG 3 cut(s) 990, 1289, 2057
ZrmI AGTACT 1 cut(s) 2015
Zsp2I ATGCAT 1 cut(s) 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.