disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 6 - 96 | 7e-20 | Rx N-terminal domain |
| AAA_16 | PF13191 | 182 - 324 | 6e-07 | AAA ATPase domain |
| NB-ARC | PF00931 | 186 - 363 | 9.3e-37 | NB-ARC domain |
| WHD_DRP | PF23559 | 449 - 518 | 1.8e-20 | Disease resistance protein Winged helix domain |
| LRR_8 | PF13855 | 567 - 623 | 3e-07 | Leucine rich repeat |
| LRR_14 | PF23598 | 610 - 903 | 3.9e-25 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 707 - 823 | 1.4e-28 | R13L1/DRL21 LRRs |
| LRR_RPS2 | PF23247 | 790 - 928 | 6.8e-06 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| CSD | PF00313 | 1004 - 1069 | 1.1e-23 | 'Cold-shock' DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2980 |
| Acc36I | ACCTGC | 1 cut(s) | 2980 |
| AccI | GTMKAC | 3 cut(s) | 93, 2158, 2806 |
| AccII | CGCG | 1 cut(s) | 3177 |
| AccIII | TCCGGA | 1 cut(s) | 186 |
| AciI | CCGC | 8 cut(s) | 1195, 1313, 2258, 2756, 3124, 3177, 3271, 3274 |
| AclWI | GGATC | 2 cut(s) | 737, 2320 |
| AcoI | YGGCCR | 1 cut(s) | 3139 |
| AcsI | RAATTY | 5 cut(s) | 723, 963, 1750, 2246, 3152 |
| AcuI | CTGAAG | 4 cut(s) | 27, 936, 2132, 2991 |
| AcyI | GRCGYC | 1 cut(s) | 90 |
| AfaI | GTAC | 6 cut(s) | 1554, 1708, 2349, 2711, 2862, 2938 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 2149, 2344, 2432, 3163 |
| AflIII | ACRYGT | 2 cut(s) | 213, 977 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2813 |
| AjiI | CACGTC | 1 cut(s) | 214 |
| AjnI | CCWGG | 3 cut(s) | 2271, 3141, 3186 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1257, 1289 |
| Alw21I | GWGCWC | 2 cut(s) | 147, 2931 |
| Alw26I | GTCTC | 5 cut(s) | 70, 157, 997, 2244, 2829 |
| AlwI | GGATC | 2 cut(s) | 737, 2320 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2767 |
| Ama87I | CYCGRG | 1 cut(s) | 2591 |
| Aor13HI | TCCGGA | 1 cut(s) | 186 |
| AoxI | GGCC | 4 cut(s) | 3139, 3169, 3189, 3205 |
| ApeKI | GCWGC | 4 cut(s) | 1169, 2596, 2758, 3218 |
| ApoI | RAATTY | 5 cut(s) | 723, 963, 1750, 2246, 3152 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 203, 235, 1771, 1803 |
| AseI | ATTAAT | 1 cut(s) | 2321 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 132, 1451, 3026, 3044 |
| AspLEI | GCGC | 2 cut(s) | 2206, 3218 |
| AspS9I | GGNCC | 3 cut(s) | 2140, 3170, 3206 |
| AsuC2I | CCSGG | 2 cut(s) | 2339, 3062 |
| AsuHPI | GGTGA | 7 cut(s) | 85, 308, 1913, 2107, 2224, 3031, 3049 |
| AsuII | TTCGAA | 1 cut(s) | 1927 |
| AvaI | CYCGRG | 1 cut(s) | 2591 |
| AvaII | GGWCC | 1 cut(s) | 2140 |
| BalI | TGGCCA | 1 cut(s) | 3141 |
| BanII | GRGCYC | 1 cut(s) | 2931 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2508, 2540 |
| BbsI | GAAGAC | 3 cut(s) | 513, 2756, 3078 |
| Bbv12I | GWGCWC | 2 cut(s) | 147, 2931 |
| BbvI | GCAGC | 4 cut(s) | 1156, 2583, 2745, 3205 |
| BccI | CCATC | 9 cut(s) | 55, 129, 640, 782, 1658, 2452, 2692, 3131, 3200 |
| BceAI | ACGGC | 4 cut(s) | 2549, 2919, 3002, 3133 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1907, 1941 |
| BciT130I | CCWGG | 3 cut(s) | 2273, 3143, 3188 |
| BclI | TGATCA | 1 cut(s) | 1980 |
| BcnI | CCSGG | 2 cut(s) | 2339, 3062 |
| BcoDI | GTCTC | 5 cut(s) | 70, 157, 997, 2244, 2829 |
| BfaI | CTAG | 5 cut(s) | 348, 540, 912, 1622, 2243 |
| BfmI | CTRYAG | 2 cut(s) | 306, 2759 |
| BfoI | RGCGCY | 1 cut(s) | 3219 |
| BfuAI | ACCTGC | 1 cut(s) | 2980 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 3177, 3213 |
| BglII | AGATCT | 2 cut(s) | 1472, 2125 |
| BisI | GCNGC | 6 cut(s) | 1170, 2597, 2759, 3178, 3219, 3272 |
| BlsI | GCNGC | 6 cut(s) | 1171, 2598, 2760, 3179, 3220, 3273 |
| BmcAI | AGTACT | 1 cut(s) | 1708 |
| Bme1390I | CCNGG | 5 cut(s) | 2273, 2339, 3062, 3143, 3188 |
| Bme18I | GGWCC | 1 cut(s) | 2140 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2813 |
| BmeT110I | CYCGRG | 1 cut(s) | 2591 |
| BmgBI | CACGTC | 1 cut(s) | 214 |
| BmgT120I | GGNCC | 3 cut(s) | 2140, 3170, 3206 |
| BmiI | GGNNCC | 3 cut(s) | 177, 899, 3208 |
| BmrFI | CCNGG | 5 cut(s) | 2273, 2339, 3062, 3143, 3188 |
| BmsI | GCATC | 2 cut(s) | 2002, 2173 |
| BpiI | GAAGAC | 3 cut(s) | 513, 2756, 3078 |
| BpmI | CTGGAG | 1 cut(s) | 2150 |
| Bpu14I | TTCGAA | 1 cut(s) | 1927 |
| BpuMI | CCSGG | 2 cut(s) | 2339, 3062 |
| BsaAI | YACGTR | 1 cut(s) | 980 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1305, 1613 |
| BsaHI | GRCGYC | 1 cut(s) | 90 |
| BsaJI | CCNNGG | 4 cut(s) | 2329, 2338, 3060, 3186 |
| BsaWI | WCCGGW | 1 cut(s) | 186 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 2149, 2344, 2432, 3163 |
| Bse1I | ACTGG | 3 cut(s) | 2610, 2957, 3208 |
| Bse3DI | GCAATG | 3 cut(s) | 402, 499, 2566 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1305, 1613 |
| BseAI | TCCGGA | 1 cut(s) | 186 |
| BseBI | CCWGG | 3 cut(s) | 2273, 3143, 3188 |
| BseDI | CCNNGG | 4 cut(s) | 2329, 2338, 3060, 3186 |
| BseJI | GATNNNNATC | 2 cut(s) | 1305, 1613 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 2149, 2344, 2432, 3163 |
| BseMI | GCAATG | 3 cut(s) | 402, 499, 2566 |
| BseMII | CTCAG | 3 cut(s) | 1757, 2759, 2988 |
| BseNI | ACTGG | 3 cut(s) | 2610, 2957, 3208 |
| BseRI | GAGGAG | 6 cut(s) | 173, 631, 1271, 2418, 2886, 3014 |
| BseXI | GCAGC | 4 cut(s) | 1156, 2583, 2745, 3205 |
| BseYI | CCCAGC | 1 cut(s) | 2639 |
| Bsh1236I | CGCG | 1 cut(s) | 3177 |
| BshFI | GGCC | 4 cut(s) | 3141, 3171, 3191, 3207 |
| BsiHKAI | GWGCWC | 2 cut(s) | 147, 2931 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2591 |
| BsiSI | CCGG | 5 cut(s) | 179, 187, 2338, 2735, 3062 |
| BslFI | GGGAC | 2 cut(s) | 339, 3264 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 2149, 2344, 2432, 3163 |
| BsmAI | GTCTC | 5 cut(s) | 70, 157, 997, 2244, 2829 |
| BsmFI | GGGAC | 2 cut(s) | 339, 3264 |
| BsmI | GAATGC | 4 cut(s) | 157, 1580, 2293, 2599 |
| BsnI | GGCC | 4 cut(s) | 3141, 3171, 3191, 3207 |
| BsoBI | CYCGRG | 1 cut(s) | 2591 |
| Bsp119I | TTCGAA | 1 cut(s) | 1927 |
| Bsp1286I | GDGCHC | 2 cut(s) | 147, 2931 |
| Bsp13I | TCCGGA | 1 cut(s) | 186 |
| Bsp1407I | TGTACA | 2 cut(s) | 1552, 2860 |
| BspACI | CCGC | 8 cut(s) | 1195, 1313, 2258, 2756, 3124, 3177, 3271, 3274 |
| BspANI | GGCC | 4 cut(s) | 3141, 3171, 3191, 3207 |
| BspCNI | CTCAG | 3 cut(s) | 1758, 2760, 2989 |
| BspEI | TCCGGA | 1 cut(s) | 186 |
| BspFNI | CGCG | 1 cut(s) | 3177 |
| BspHI | TCATGA | 1 cut(s) | 397 |
| BspLI | GGNNCC | 3 cut(s) | 177, 899, 3208 |
| BspMAI | CTGCAG | 1 cut(s) | 2763 |
| BspMI | ACCTGC | 1 cut(s) | 2980 |
| BspPI | GGATC | 2 cut(s) | 737, 2320 |
| BspQI | GCTCTTC | 1 cut(s) | 138 |
| BspT104I | TTCGAA | 1 cut(s) | 1927 |
| BsrDI | GCAATG | 3 cut(s) | 402, 499, 2566 |
| BsrGI | TGTACA | 2 cut(s) | 1552, 2860 |
| BsrI | ACTGG | 3 cut(s) | 2610, 2957, 3208 |
| BssECI | CCNNGG | 4 cut(s) | 2329, 2338, 3060, 3186 |
| BssNI | GRCGYC | 1 cut(s) | 90 |
| BssT1I | CCWWGG | 1 cut(s) | 2329 |
| Bst2UI | CCWGG | 3 cut(s) | 2273, 3143, 3188 |
| Bst4CI | ACNGT | 5 cut(s) | 1557, 1897, 2080, 2811, 3255 |
| Bst6I | CTCTTC | 2 cut(s) | 138, 1929 |
| BstACI | GRCGYC | 1 cut(s) | 90 |
| BstAUI | TGTACA | 2 cut(s) | 1552, 2860 |
| BstBAI | YACGTR | 1 cut(s) | 980 |
| BstBI | TTCGAA | 1 cut(s) | 1927 |
| BstC8I | GCNNGC | 2 cut(s) | 39, 2927 |
| BstDEI | CTNAG | 9 cut(s) | 408, 883, 1289, 1409, 1766, 1775, 2119, 2768, 2997 |
| BstEII | GGTNACC | 1 cut(s) | 2333 |
| BstFNI | CGCG | 1 cut(s) | 3177 |
| BstH2I | RGCGCY | 1 cut(s) | 3219 |
| BstHHI | GCGC | 2 cut(s) | 2206, 3218 |
| BstMAI | GTCTC | 5 cut(s) | 70, 157, 997, 2244, 2829 |
| BstNI | CCWGG | 3 cut(s) | 2273, 3143, 3188 |
| BstPI | GGTNACC | 1 cut(s) | 2333 |
| BstSCI | CCNGG | 5 cut(s) | 2271, 2337, 3060, 3141, 3186 |
| BstSFI | CTRYAG | 2 cut(s) | 306, 2759 |
| BstUI | CGCG | 1 cut(s) | 3177 |
| BstV1I | GCAGC | 4 cut(s) | 1156, 2583, 2745, 3205 |
| BstV2I | GAAGAC | 3 cut(s) | 513, 2756, 3078 |
| BstX2I | RGATCY | 2 cut(s) | 1472, 2125 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1897 |
| BstYI | RGATCY | 2 cut(s) | 1472, 2125 |
| BsuRI | GGCC | 4 cut(s) | 3141, 3171, 3191, 3207 |
| BtgZI | GCGATG | 1 cut(s) | 1062 |
| BtrI | CACGTC | 1 cut(s) | 214 |
| BtsI | GCAGTG | 1 cut(s) | 845 |
| BtsIMutI | CAGTG | 4 cut(s) | 845, 2603, 2816, 3201 |
| BveI | ACCTGC | 1 cut(s) | 2980 |
| Cac8I | GCNNGC | 2 cut(s) | 39, 2927 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2767 |
| CciI | TCATGA | 1 cut(s) | 397 |
| CfoI | GCGC | 2 cut(s) | 2206, 3218 |
| Cfr13I | GGNCC | 3 cut(s) | 2140, 3170, 3206 |
| CseI | GACGC | 3 cut(s) | 79, 383, 1835 |
| Csp6I | GTAC | 6 cut(s) | 1553, 1707, 2348, 2710, 2861, 2937 |
| CviQI | GTAC | 6 cut(s) | 1553, 1707, 2348, 2710, 2861, 2937 |
| DdeI | CTNAG | 9 cut(s) | 408, 883, 1289, 1409, 1766, 1775, 2119, 2768, 2997 |
| DraI | TTTAAA | 4 cut(s) | 1111, 1416, 1492, 1728 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2813 |
| EaeI | YGGCCR | 1 cut(s) | 3139 |
| Eam1104I | CTCTTC | 2 cut(s) | 138, 1929 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2813 |
| EarI | CTCTTC | 2 cut(s) | 138, 1929 |
| Ecl136II | GAGCTC | 1 cut(s) | 2929 |
| Eco130I | CCWWGG | 1 cut(s) | 2329 |
| Eco24I | GRGCYC | 1 cut(s) | 2931 |
| Eco47I | GGWCC | 1 cut(s) | 2140 |
| Eco53kI | GAGCTC | 1 cut(s) | 2929 |
| Eco57I | CTGAAG | 4 cut(s) | 27, 936, 2132, 2991 |
| Eco88I | CYCGRG | 1 cut(s) | 2591 |
| Eco91I | GGTNACC | 1 cut(s) | 2333 |
| EcoICRI | GAGCTC | 1 cut(s) | 2929 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3170 |
| EcoO65I | GGTNACC | 1 cut(s) | 2333 |
| EcoRI | GAATTC | 1 cut(s) | 3152 |
| EcoRII | CCWGG | 3 cut(s) | 2271, 3141, 3186 |
| EcoT14I | CCWWGG | 1 cut(s) | 2329 |
| EcoT22I | ATGCAT | 1 cut(s) | 1533 |
| EcoT38I | GRGCYC | 1 cut(s) | 2931 |
| ErhI | CCWWGG | 1 cut(s) | 2329 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 424, 456, 1392, 1424 |
| FaqI | GGGAC | 2 cut(s) | 339, 3264 |
| FbaI | TGATCA | 1 cut(s) | 1980 |
| FblI | GTMKAC | 3 cut(s) | 93, 2158, 2806 |
| Fnu4HI | GCNGC | 6 cut(s) | 1170, 2597, 2759, 3178, 3219, 3272 |
| FriOI | GRGCYC | 1 cut(s) | 2931 |
| Fsp4HI | GCNGC | 6 cut(s) | 1170, 2597, 2759, 3178, 3219, 3272 |
| FspBI | CTAG | 5 cut(s) | 348, 540, 912, 1622, 2243 |
| GlaI | GCGC | 2 cut(s) | 2205, 3217 |
| GluI | GCNGC | 6 cut(s) | 1170, 2597, 2759, 3178, 3219, 3272 |
| GsaI | CCCAGC | 1 cut(s) | 2643 |
| GsuI | CTGGAG | 1 cut(s) | 2150 |
| HaeII | RGCGCY | 1 cut(s) | 3219 |
| HaeIII | GGCC | 4 cut(s) | 3141, 3171, 3191, 3207 |
| HapII | CCGG | 5 cut(s) | 179, 187, 2338, 2735, 3062 |
| HgaI | GACGC | 3 cut(s) | 79, 383, 1835 |
| HhaI | GCGC | 2 cut(s) | 2206, 3218 |
| Hin1I | GRCGYC | 1 cut(s) | 90 |
| Hin6I | GCGC | 2 cut(s) | 2204, 3216 |
| HinP1I | GCGC | 2 cut(s) | 2204, 3216 |
| HincII | GTYRAC | 1 cut(s) | 94 |
| HindII | GTYRAC | 1 cut(s) | 94 |
| HindIII | AAGCTT | 4 cut(s) | 933, 1176, 1291, 1946 |
| HpaII | CCGG | 5 cut(s) | 179, 187, 2338, 2735, 3062 |
| HphI | GGTGA | 7 cut(s) | 85, 308, 1913, 2107, 2224, 3031, 3049 |
| Hpy166II | GTNNAC | 6 cut(s) | 94, 2076, 2159, 2267, 2807, 3094 |
| Hpy188I | TCNGA | 9 cut(s) | 114, 742, 850, 1035, 1446, 2495, 2668, 2998, 3115 |
| Hpy8I | GTNNAC | 6 cut(s) | 94, 2076, 2159, 2267, 2807, 3094 |
| Hpy99I | CGWCG | 4 cut(s) | 95, 236, 3071, 3119 |
| HpyAV | CCTTC | 8 cut(s) | 312, 316, 605, 2171, 2621, 3010, 3034, 3232 |
| HpyCH4III | ACNGT | 5 cut(s) | 1557, 1897, 2080, 2811, 3255 |
| HpyCH4IV | ACGT | 5 cut(s) | 213, 234, 518, 979, 3198 |
| HpyF3I | CTNAG | 9 cut(s) | 408, 883, 1289, 1409, 1766, 1775, 2119, 2768, 2997 |
| HpySE526I | ACGT | 5 cut(s) | 213, 234, 518, 979, 3198 |
| Hsp92I | GRCGYC | 1 cut(s) | 90 |
| HspAI | GCGC | 2 cut(s) | 2204, 3216 |
| Kpn2I | TCCGGA | 1 cut(s) | 186 |
| Ksp22I | TGATCA | 1 cut(s) | 1980 |
| LguI | GCTCTTC | 1 cut(s) | 138 |
| LmnI | GCTCC | 3 cut(s) | 150, 175, 2646 |
| Lsp1109I | GCAGC | 4 cut(s) | 1156, 2583, 2745, 3205 |
| LweI | GCATC | 2 cut(s) | 2002, 2173 |
| MaeI | CTAG | 5 cut(s) | 348, 540, 912, 1622, 2243 |
| MaeII | ACGT | 5 cut(s) | 213, 234, 518, 979, 3198 |
| MaeIII | GTNAC | 9 cut(s) | 822, 970, 1009, 1284, 1395, 2025, 2333, 2632, 3199 |
| MfeI | CAATTG | 3 cut(s) | 361, 677, 2207 |
| MflI | RGATCY | 2 cut(s) | 1472, 2125 |
| MhlI | GDGCHC | 2 cut(s) | 147, 2931 |
| MlsI | TGGCCA | 1 cut(s) | 3141 |
| MluNI | TGGCCA | 1 cut(s) | 3141 |
| MlyI | GAGTC | 4 cut(s) | 628, 1801, 2640, 3029 |
| MmeI | TCCRAC | 5 cut(s) | 45, 2118, 2454, 3138, 3242 |
| Mox20I | TGGCCA | 1 cut(s) | 3141 |
| Mph1103I | ATGCAT | 1 cut(s) | 1533 |
| MroI | TCCGGA | 1 cut(s) | 186 |
| MroXI | GAANNNNTTC | 4 cut(s) | 132, 1451, 3026, 3044 |
| MscI | TGGCCA | 1 cut(s) | 3141 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2916, 3131 |
| Msp20I | TGGCCA | 1 cut(s) | 3141 |
| MspA1I | CMGCKG | 3 cut(s) | 1313, 2639, 2758 |
| MspI | CCGG | 5 cut(s) | 179, 187, 2338, 2735, 3062 |
| MspR9I | CCNGG | 5 cut(s) | 2273, 2339, 3062, 3143, 3188 |
| MssI | GTTTAAAC | 1 cut(s) | 1416 |
| MunI | CAATTG | 3 cut(s) | 361, 677, 2207 |
| Mva1269I | GAATGC | 4 cut(s) | 157, 1580, 2293, 2599 |
| MvaI | CCWGG | 3 cut(s) | 2273, 3143, 3188 |
| MvnI | CGCG | 1 cut(s) | 3177 |
| NciI | CCSGG | 2 cut(s) | 2339, 3062 |
| NlaIV | GGNNCC | 3 cut(s) | 177, 899, 3208 |
| NmeAIII | GCCGAG | 2 cut(s) | 830, 3080 |
| NmuCI | GTSAC | 4 cut(s) | 970, 1395, 2632, 3199 |
| NsiI | ATGCAT | 1 cut(s) | 1533 |
| NspV | TTCGAA | 1 cut(s) | 1927 |
| PaeR7I | CTCGAG | 1 cut(s) | 2591 |
| PagI | TCATGA | 1 cut(s) | 397 |
| PaqCI | CACCTGC | 1 cut(s) | 2980 |
| PciSI | GCTCTTC | 1 cut(s) | 138 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 90, 240, 2412, 2910 |
| PctI | GAATGC | 4 cut(s) | 157, 1580, 2293, 2599 |
| PdmI | GAANNNNTTC | 4 cut(s) | 132, 1451, 3026, 3044 |
| PfeI | GAWTC | 7 cut(s) | 259, 302, 1306, 1929, 2009, 2663, 2942 |
| PkrI | GCNGC | 6 cut(s) | 1171, 2598, 2760, 3179, 3220, 3273 |
| PleI | GAGTC | 4 cut(s) | 627, 1800, 2639, 3029 |
| PmeI | GTTTAAAC | 1 cut(s) | 1416 |
| PpsI | GAGTC | 4 cut(s) | 627, 1800, 2639, 3029 |
| Ppu21I | YACGTR | 1 cut(s) | 980 |
| PshBI | ATTAAT | 1 cut(s) | 2321 |
| Psp124BI | GAGCTC | 1 cut(s) | 2931 |
| Psp6I | CCWGG | 3 cut(s) | 2271, 3141, 3186 |
| PspEI | GGTNACC | 1 cut(s) | 2333 |
| PspFI | CCCAGC | 1 cut(s) | 2639 |
| PspGI | CCWGG | 3 cut(s) | 2271, 3141, 3186 |
| PspN4I | GGNNCC | 3 cut(s) | 177, 899, 3208 |
| PspPI | GGNCC | 3 cut(s) | 2140, 3170, 3206 |
| PspXI | VCTCGAGB | 1 cut(s) | 2591 |
| PstI | CTGCAG | 1 cut(s) | 2763 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2767 |
| PsuI | RGATCY | 2 cut(s) | 1472, 2125 |
| PvuII | CAGCTG | 1 cut(s) | 2639 |
| RsaI | GTAC | 6 cut(s) | 1554, 1708, 2349, 2711, 2862, 2938 |
| RsaNI | GTAC | 6 cut(s) | 1553, 1707, 2348, 2710, 2861, 2937 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2916, 3131 |
| SacI | GAGCTC | 1 cut(s) | 2931 |
| SalI | GTCGAC | 1 cut(s) | 92 |
| SapI | GCTCTTC | 1 cut(s) | 138 |
| SatI | GCNGC | 6 cut(s) | 1170, 2597, 2759, 3178, 3219, 3272 |
| Sau96I | GGNCC | 3 cut(s) | 2140, 3170, 3206 |
| ScaI | AGTACT | 1 cut(s) | 1708 |
| SchI | GAGTC | 4 cut(s) | 628, 1801, 2640, 3029 |
| ScrFI | CCNGG | 5 cut(s) | 2273, 2339, 3062, 3143, 3188 |
| SduI | GDGCHC | 2 cut(s) | 147, 2931 |
| SfaNI | GCATC | 2 cut(s) | 2002, 2173 |
| SfcI | CTRYAG | 2 cut(s) | 306, 2759 |
| Sfr274I | CTCGAG | 1 cut(s) | 2591 |
| SfuI | TTCGAA | 1 cut(s) | 1927 |
| SinI | GGWCC | 1 cut(s) | 2140 |
| SlaI | CTCGAG | 1 cut(s) | 2591 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2916, 3131 |
| SmlI | CTYRAG | 1 cut(s) | 2591 |
| SmoI | CTYRAG | 1 cut(s) | 2591 |
| SsiI | CCGC | 8 cut(s) | 1195, 1313, 2258, 2756, 3124, 3177, 3271, 3274 |
| SspI | AATATT | 4 cut(s) | 1375, 1513, 1537, 2112 |
| SspMI | CTAG | 5 cut(s) | 348, 540, 912, 1622, 2243 |
| SstI | GAGCTC | 1 cut(s) | 2931 |
| StyD4I | CCNGG | 5 cut(s) | 2271, 2337, 3060, 3141, 3186 |
| StyI | CCWWGG | 1 cut(s) | 2329 |
| TaaI | ACNGT | 5 cut(s) | 1557, 1897, 2080, 2811, 3255 |
| TaiI | ACGT | 5 cut(s) | 216, 237, 521, 982, 3201 |
| TatI | WGTACW | 3 cut(s) | 1552, 1706, 2860 |
| TauI | GCSGC | 2 cut(s) | 3180, 3274 |
| TfiI | GAWTC | 7 cut(s) | 259, 302, 1306, 1929, 2009, 2663, 2942 |
| TscAI | CASTG | 4 cut(s) | 845, 2610, 2816, 3208 |
| TseFI | GTSAC | 4 cut(s) | 970, 1395, 2632, 3199 |
| TseI | GCWGC | 4 cut(s) | 1169, 2596, 2758, 3218 |
| Tsp45I | GTSAC | 4 cut(s) | 970, 1395, 2632, 3199 |
| TspGWI | ACGGA | 1 cut(s) | 3250 |
| TspRI | CASTG | 4 cut(s) | 845, 2610, 2816, 3208 |
| VpaK11BI | GGWCC | 1 cut(s) | 2140 |
| VspI | ATTAAT | 1 cut(s) | 2321 |
| XapI | RAATTY | 5 cut(s) | 723, 963, 1750, 2246, 3152 |
| XbaI | TCTAGA | 2 cut(s) | 539, 2242 |
| XhoI | CTCGAG | 1 cut(s) | 2591 |
| XmiI | GTMKAC | 3 cut(s) | 93, 2158, 2806 |
| XmnI | GAANNNNTTC | 4 cut(s) | 132, 1451, 3026, 3044 |
| XspI | CTAG | 5 cut(s) | 348, 540, 912, 1622, 2243 |
| ZrmI | AGTACT | 1 cut(s) | 1708 |
| Zsp2I | ATGCAT | 1 cut(s) | 1533 |