Rorug02G0322500

disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
39453162 .. 39469178
16017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0322500.1

Sequence Viewer

Length: 4473 bp
ATGGAAGTCCCAATCCTCGGCAGCGATTCACTGAAATGGATTGAGTTCCCTATTCCTTCTTCTTCTTCTAATGCCGCCACCGCCACCGCCACCGCCGATGCTGATACTTGTGCCCCTCTCACTCACGATTGCGCTTCTTCCATCGCCATTGGCGACCCTCCTACACATCTCATATGGAGAATCCACAAGCATCTCCCTCACTCTCTCGAATTACTCGAGCTCTCTGCTAACAAAGAATTTCCAAAACTCGGACTGCGAATCACTTTTCCACAAGCACTCTCTTCCTCCGTTTTTCTTTGCAAAAATGAGATTGATGTCGGTTCCAGGAGCCACCCTTATTTGCTCTACGCATTGACCGTCTCCGGAGTCGCTTACCTTTTGAGACTTGGAACCGTCTCTAGTTATGCTTCCAGCTCTGTTATTAGAGAGTTTAGCTTGCATCCCCACGGACCTATAACCAGTGCCGCAGCAACGCCAACCGGATGTCTTGTTGTAGGTCGGAATGACGGCTCACTTGCTTGCTTTCAACTCACACTTGAATCCACTGCTCCTGGTTTTCTGCAAGAGCTACGGGATGATCCAGGAATCGGTAGTTTGTGGGGTTTCATGTCAAGGGGTAGGACGGTAGGCGCTGTGCAGGACTTGGCTATATCTATGGTTCATGGGAAACCACTTATATTCGTTATTCATACGGATGGGGTGTTACGAGTATGGGATATATCATTTCATAGCAGGCTCTTTTCCCATAAGATGAACGGTCTTACAATGGCAGGAGCTGCATTGGTAAGGTTGTGGGTTGGTCAAGCTGACAATGATTCGAGCATAATTCCTTTGGCAATCTTGTACAGACATAATTCGGAAATGAGCTCAGAGACGATCTATGTATATAGCCTCCATTGTAACGTGGGAGACAGAATTGTTTTATCGTTGGATCCTTCAGAACAAATTTTTCCTATTGAGGAGGATGGATGGATTGATGTCAAACTTATTTCCAACAAGATATGCATATTGAAAAATCAGGGACTAGTGCTTCACAAGTTGTTGCATACAAATGTCAACATGGTAGATGCAGTTTGTTATGCTTTGCAAGAGGACTTCGTTGCAGATCAACTCTTTCAAAGTTCTGAACATTCTTCGGATGACCTTCTTTTGATAACTCATTCAATATTTTCATCTTCAAAGGATCATATTCTACCCGTTGTATCTTCTATTTTCTTACGTAGGCTGCTTCTTCCTGGCATTCATCATAATGCTGCTTTGCGCACAACTTTGTTGGATTATAATAGGCACTGGACTGAGTCAGATTTCCACTCCTTAACTGCTGACGGGTTGAAGAAGGAAATTCTTTCCCTGATTGAACATGAGGGTCTGACTGGTAATTCATCGTCAATATTTTGCTGCTGGAAAATTTTTTGTGCTCGCTATTTCCAAAACTGGTGCAAGAGCAATGCACCATGTGGCCTGCTTGTTGATTCCTCAACTGGCACTGTTGGTTTAATTAGAAAGAGTTCAGTATCTCTTTTTCGTTCTTTGGAGGATATTGAGCGGGTTAATGATGGCTCTTTGGATGAACTTGGCAATTTTCCAAGCTTTGGGTTGGATTCATTTGATGAGACTCTTGATTGTGAGCTACTTGCTGAAATGCTCAGATGTGTCATTAACGTCAGCCAGCAATTGGGCAAAACAGCTTCTGCTATATTTTATGAATCACTCATTAGTGCACCACCAGTTATCTCATCTGAAGAAATTATTCCGCGCCTATTGAAGATATTAGAAACTGGATATAGTTCAACAGCCGCAGTGCTTCATATATCAGATCTTGGACCTGATGTTGCCTGGGAGAAAAATCTAGCAGATCACAAAAATTTGAGGAAATTTTCAATTGACATGATGTTGTCTCTTCATGCTTTGCACGAGAAATCTGGCACATGGAGCCGTATTTTGAGTGTGATTGAGAACTATCTAAAGTATCTCATACCTCGGAAAATTATACAAAAATTTGATGCTGAAGTAGCATTGGATATCAATGCCTCCATCTTGGTCCAGGCTATGTCTCAAGTTGCAAAGGTTATGTTTGAGTCTGCACTGGATATTCATCTGTTTCTAAGCTATCTAGTGAGCATTAGTGGGCAGATCAATATGCTACATGATGATATATCCAAAATACAGCTTGAGTTGGTTCCAGTGATTCAAGAAATCATTTATGAGTGGCTTCTCTTACATTTCTTTGCCACCACACCATCTGAATCAGCTGCAATTGAAGATTTCAGCTCTCAACTTTCATTGTTACAAATTGATAGCAACACAGGCAGAAGATCATGGAATGAGAAGCTTGGGAAGTGCGAGTTCACTCTGGCTTTTATATTCTTACTTAATGTTAGAAGTTCCTCCAAAGACCAGAGCCACTTTTCTCCAAGAAGCATACCAAACGTTCAGGACATAATTGATTCAATACGAGAATTTGCTAGCTGGATCATGTGGGGCCAGAATGGGGAATCCCTTACTGTCCTGAGGCGTGCAGCGGATCTTGCATTGATCCTGCTACGGCACGGGCAGTATGATGCTGTTGAGCACCTACTCACTATTGTGGAGGCACATTTACAAAAGGAGAAGACTTCTCATCGTATTCAAGCTACAGATGGTGGATGGTGCATACTGCATCATCTTTTAGGATGCTGTTTCCTTGCTCAAGCACATCGTGGATTACATGGGGTCCTGAAAGAGAGGAAAGTTCATGAAGCTGTTCGTTGTTTCTTCAGAGCTGCATCTGGAAATGGCTCAGCGCAGGCCATACAAAGTTTGCCTCAGGAAGCGGGGTTGCCACATCTTGGTATCGATGGTAGCGTATCAGATGCTTCATGGAGGCTCCATTACTATCAGTGGGCAATGCAGATATTTGAGCAATATAATATTAGTGAAGGTGCATGTCAGTTTGCTCTTGCTGCGCTTGAGCAAGTTGAGGAAGCTTATAGTGCAAACAATGAGTCCCATGACAGAGCTCCATTTGATGAATCAGTATCTACCATCAAGGGAAGACTTTGGGCACATGTTTGCAAGTTTACTTTAGATCTCAATCTCTTTTATGATGCGTATTGTGCAATAATTTCAAATCCAGATGAGGAGAGCAAGCACATCTGGTTGAGGCGTCTTATAATTGTTCTTTATGAACGTGGTGCCATAAAGATTCTTTGTGGTGGTCAGCTACCATTCATTGGTCTTACAGAGAAGGTGGAACAAGAGCTTTCATGGAAGGCTGAGCGGTCAGACATTTTAGCAAAGCCAAACTTATATAAGTTGCTTTATGCATTTGAAATGCATCGGCATAACTGGCGAAAAGCAGCAAGCTACATGTACCTTTATTCTGCTCGTTTGAGAACTGAAACATCTCTGAAAGGGTACCAGCAATTGTGGCGAGCACTGAAGGAGATACTGAATGGGCTCTCTGCTGCTATCAACGCACTTCATCTTGTTCATCCAGCTTATGCTTGGATTGATCCTCTCCTTGAGAGAAATGCTATTCACAATGAGCAGTATCCAAGTAAAAAGGCTAGAATAACAATTGAAGACCAGCCAGCAAGCAATGATGTTGATCCTCAAAGTTGGAAATCTTATATAGATATTCAGAAAATTGAAAACGAGTTTGTGCTTACTTCAGCAGAATATTTGCTTTCACTGGCACATGTCAAATGGACAAATACAGGAACCCAGAAAGCACCATTGGAGTTGGTTGATCTCTTGATCCAGACAAATCTATATGATATGGCATTTACAGTTCTTTTAAGATTCTTCAAAGGTTCAGAGTTAAAGAGGGGATTGGAAAGAGTTTTCTCTGCTATGTCACTAAAATGCTGTCCACATATAGTTAATTCTTCAAGGGTCGGGGATGATTCGACAACACGGGGTCTTCTGTTGACTTCTTCAAAGGATGAAGTGATCGTTCATGGTTCACCAGATACAAGTTCAGCAAATCAACAATCCAGCGGAATTAATCAATGGGGAACTCTCGAGCTTTATCTTGACCGATATAAAGTCTTCCATGCACGTCTACCATTTATTGTTGCTGAAACTCTTCTTCGTACGGATTCTCAAATCGAACTGCCTCTTTGGTTGGTTAAATTATTCAAGGATGGCAGGAGGGAAAAGACATTGAGGATGACTGGCCAAGAATCAAGTCCGGCATTATTATTTCAACTATATGTTGATTATGGTCGATATAGAGAAGCTACGAATCTGTTGCTTGAGTACATAGGTTCTTTAGCATCCATGAGACCAGCCAACATCATGAATCGTAAAAGACCATTTGGAGTTTGGTTTCCATATACAACAATTCAGCGCCTCTGGTGCCAACTTGAGGAAATGATAAATTCAGGTCACATGGTAGATCAATGTAAGCAGCTCAAAGATTTGCTACATGGAGCTTTGCTGAAACATCTCCAACTGGTAAAATCGGACTCGGAAGATGCAGTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1490

Amino Acids

167.32

Weight (kDa)

6.06

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_Nup120_160 PF11715 57 - 515 1.4e-56 Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2 PF17238 532 - 726 8.4e-92 NUP160, helical domain
TPR_NUP160_120_M PF23354 905 - 1156 1.3e-34 NUP160/120 middle TPR
HEAT_Nup120 PF23300 906 - 1055 7.3e-13 Nucleoporin Nup120, HEAT repeats
TPR_Nup160_C PF23347 1208 - 1471 5.5e-13 Nup160 C-terminal TPR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1281, 3152
Acc16I TGCGCA 1 cut(s) 1262
Acc65I GGTACC 1 cut(s) 3396
AccB1I GGYRCC 3 cut(s) 3173, 3396, 4341
AccB7I CCANNNNNTGG 4 cut(s) 1592, 1675, 2828, 3212
AccBSI CCGCTC 2 cut(s) 1546, 3259
AccI GTMKAC 1 cut(s) 4045
AccII CGCG 1 cut(s) 1756
AccIII TCCGGA 1 cut(s) 362
AclI AACGTT 1 cut(s) 2430
AcoI YGGCCR 1 cut(s) 4159
AcsI RAATTY 9 cut(s) 236, 945, 1341, 1407, 1864, 1874, 1997, 2459, 4363
AcuI CTGAAG 6 cut(s) 921, 1761, 2028, 2740, 3440, 3636
AcyI GRCGYC 1 cut(s) 3145
AdeI CACNNNGTG 2 cut(s) 1457, 2699
AfaI GTAC 5 cut(s) 845, 3353, 3398, 4078, 4244
AfiI CCNNNNNNNGG 9 cut(s) 17, 248, 587, 1592, 1675, 2491, 2828, 3212, 4351
AflIII ACRYGT 3 cut(s) 3046, 3348, 3679
AhlI ACTAGT 1 cut(s) 1024
AjiI CACGTC 1 cut(s) 4043
AjnI CCWGG 6 cut(s) 323, 550, 580, 1234, 1835, 2043
AjuI GAANNNNNNNTTGG 2 cut(s) 3701, 3733
AleI CACNNNNGTG 1 cut(s) 2585
Alw21I GWGCWC 7 cut(s) 222, 869, 1420, 1723, 2574, 3001, 3418
Alw26I GTCTC 9 cut(s) 364, 376, 400, 866, 903, 1607, 1902, 2058, 4261
Alw44I GTGCAC 1 cut(s) 1719
AlwNI CAGNNNCTG 2 cut(s) 776, 1691
Ama87I CYCGRG 2 cut(s) 215, 4004
Aor13HI TCCGGA 1 cut(s) 362
AoxI GGCC 4 cut(s) 1459, 2482, 2787, 4159
ApaLI GTGCAC 1 cut(s) 1719
ApoI RAATTY 9 cut(s) 236, 945, 1341, 1407, 1864, 1874, 1997, 2459, 4363
ArsI GACNNNNNNTTYG 2 cut(s) 2969, 3001
AseI ATTAAT 1 cut(s) 3987
Asp700I GAANNNNTTC 4 cut(s) 1507, 1749, 2742, 4068
Asp718I GGTACC 1 cut(s) 3396
AspLEI GCGC 7 cut(s) 134, 632, 1263, 1758, 2785, 2947, 4335
AspS9I GGNCC 5 cut(s) 449, 1823, 2041, 2482, 2713
AsuHPI GGTGA 1 cut(s) 3939
AsuNHI GCTAGC 1 cut(s) 2465
AvaI CYCGRG 2 cut(s) 215, 4004
AvaII GGWCC 4 cut(s) 449, 1823, 2041, 2713
AxyI CCTNAGG 2 cut(s) 2510, 2805
BaeGI GKGCMC 3 cut(s) 115, 1723, 3046
BalI TGGCCA 1 cut(s) 4161
BamHI GGATCC 1 cut(s) 931
BanI GGYRCC 3 cut(s) 3173, 3396, 4341
BanII GRGCYC 4 cut(s) 222, 869, 3001, 3441
BauI CACGAG 1 cut(s) 1913
BbsI GAAGAC 5 cut(s) 2618, 3040, 3570, 3896, 4024
Bbv12I GWGCWC 7 cut(s) 222, 869, 1420, 1723, 2574, 3001, 3418
BceAI ACGGC 3 cut(s) 523, 1920, 2561
BcgI CGANNNNNNTGC 4 cut(s) 206, 240, 4216, 4250
BciT130I CCWGG 6 cut(s) 325, 552, 582, 1236, 1837, 2045
BciVI GTATCC 1 cut(s) 3543
BcoDI GTCTC 9 cut(s) 364, 376, 400, 866, 903, 1607, 1902, 2058, 4261
BcuI ACTAGT 1 cut(s) 1024
BfaI CTAG 6 cut(s) 399, 1025, 1850, 2114, 2466, 3549
BfmI CTRYAG 1 cut(s) 2634
BfoI RGCGCY 2 cut(s) 633, 4336
BfuI GTATCC 1 cut(s) 3543
BglII AGATCT 2 cut(s) 1816, 3067
BlpI GCTNAGC 2 cut(s) 2779, 3255
Bme1390I CCNGG 6 cut(s) 325, 552, 582, 1236, 1837, 2045
Bme18I GGWCC 4 cut(s) 449, 1823, 2041, 2713
BmeT110I CYCGRG 2 cut(s) 215, 4004
BmgBI CACGTC 1 cut(s) 4043
BmgT120I GGNCC 5 cut(s) 449, 1823, 2041, 2482, 2713
BmrFI CCNGG 6 cut(s) 325, 552, 582, 1236, 1837, 2045
BmtI GCTAGC 1 cut(s) 2469
BpiI GAAGAC 5 cut(s) 2618, 3040, 3570, 3896, 4024
Bpu1102I GCTNAGC 2 cut(s) 2779, 3255
BpuEI CTTGAG 7 cut(s) 2040, 2192, 2673, 2969, 3524, 4259, 4370
Bsa29I ATCGAT 1 cut(s) 2835
BsaAI YACGTR 1 cut(s) 1220
BsaBI GATNNNNATC 3 cut(s) 2094, 3072, 3588
BsaHI GRCGYC 1 cut(s) 3145
BsaI GGTCTC 1 cut(s) 4261
BsaJI CCNNGG 4 cut(s) 16, 445, 1836, 1979
BsaWI WCCGGW 2 cut(s) 362, 479
Bsc4I CCNNNNNNNGG 9 cut(s) 17, 248, 587, 1592, 1675, 2491, 2828, 3212, 4351
Bse21I CCTNAGG 2 cut(s) 2510, 2805
Bse3DI GCAATG 3 cut(s) 1453, 2892, 3586
Bse8I GATNNNNATC 3 cut(s) 2094, 3072, 3588
BseAI TCCGGA 1 cut(s) 362
BseBI CCWGG 6 cut(s) 325, 552, 582, 1236, 1837, 2045
BseCI ATCGAT 1 cut(s) 2835
BseDI CCNNGG 4 cut(s) 16, 445, 1836, 1979
BseJI GATNNNNATC 3 cut(s) 2094, 3072, 3588
BseLI CCNNNNNNNGG 9 cut(s) 17, 248, 587, 1592, 1675, 2491, 2828, 3212, 4351
BseMI GCAATG 3 cut(s) 1453, 2892, 3586
BseMII CTCAG 7 cut(s) 882, 1287, 1660, 2501, 2793, 2819, 3246
BseRI GAGGAG 2 cut(s) 974, 3134
BseSI GKGCMC 3 cut(s) 115, 1723, 3046
BsgI GTGCAG 3 cut(s) 656, 2067, 2538
Bsh1236I CGCG 1 cut(s) 1756
BshFI GGCC 4 cut(s) 1461, 2484, 2789, 4161
BshNI GGYRCC 3 cut(s) 3173, 3396, 4341
BshVI ATCGAT 1 cut(s) 2835
BsiHKAI GWGCWC 7 cut(s) 222, 869, 1420, 1723, 2574, 3001, 3418
BsiHKCI CYCGRG 2 cut(s) 215, 4004
BsiSI CCGG 3 cut(s) 363, 480, 4175
BsiWI CGTACG 1 cut(s) 4076
BslFI GGGAC 2 cut(s) 1035, 2971
BslI CCNNNNNNNGG 9 cut(s) 17, 248, 587, 1592, 1675, 2491, 2828, 3212, 4351
BsmAI GTCTC 9 cut(s) 364, 376, 400, 866, 903, 1607, 1902, 2058, 4261
BsmBI CGTCTC 3 cut(s) 364, 400, 866
BsmFI GGGAC 2 cut(s) 1035, 2971
BsmI GAATGC 1 cut(s) 1239
BsnI GGCC 4 cut(s) 1461, 2484, 2789, 4161
Bso31I GGTCTC 1 cut(s) 4261
BsoBI CYCGRG 2 cut(s) 215, 4004
Bsp13I TCCGGA 1 cut(s) 362
Bsp1407I TGTACA 1 cut(s) 843
Bsp1720I GCTNAGC 2 cut(s) 2779, 3255
BspANI GGCC 4 cut(s) 1461, 2484, 2789, 4161
BspCNI CTCAG 7 cut(s) 881, 1288, 1659, 2502, 2792, 2818, 3247
BspDI ATCGAT 1 cut(s) 2835
BspEI TCCGGA 1 cut(s) 362
BspFNI CGCG 1 cut(s) 1756
BspHI TCATGA 2 cut(s) 2734, 4281
BspOI GCTAGC 1 cut(s) 2469
BspT107I GGYRCC 3 cut(s) 3173, 3396, 4341
BspTNI GGTCTC 1 cut(s) 4261
BsrBI CCGCTC 2 cut(s) 1546, 3259
BsrDI GCAATG 3 cut(s) 1453, 2892, 3586
BsrGI TGTACA 1 cut(s) 843
BssECI CCNNGG 4 cut(s) 16, 445, 1836, 1979
BssNI GRCGYC 1 cut(s) 3145
BssSI CACGAG 1 cut(s) 1913
Bst2BI CACGAG 1 cut(s) 1913
Bst2UI CCWGG 6 cut(s) 325, 552, 582, 1236, 1837, 2045
Bst4CI ACNGT 7 cut(s) 358, 394, 625, 758, 1489, 2506, 3772
Bst6I CTCTTC 3 cut(s) 286, 1905, 4074
BstACI GRCGYC 1 cut(s) 3145
BstAPI GCANNNNNTGC 1 cut(s) 776
BstAUI TGTACA 1 cut(s) 843
BstBAI YACGTR 1 cut(s) 1220
BstDEI CTNAG 8 cut(s) 868, 1296, 1646, 2105, 2510, 2779, 2805, 3255
BstDSI CCRYGG 1 cut(s) 445
BstFNI CGCG 1 cut(s) 1756
BstH2I RGCGCY 2 cut(s) 633, 4336
BstHHI GCGC 7 cut(s) 134, 632, 1263, 1758, 2785, 2947, 4335
BstMAI GTCTC 9 cut(s) 364, 376, 400, 866, 903, 1607, 1902, 2058, 4261
BstNI CCWGG 6 cut(s) 325, 552, 582, 1236, 1837, 2045
BstNSI RCATGY 4 cut(s) 2928, 3050, 3352, 3683
BstSCI CCNGG 6 cut(s) 323, 550, 580, 1234, 1835, 2043
BstSFI CTRYAG 1 cut(s) 2634
BstSLI GKGCMC 3 cut(s) 115, 1723, 3046
BstSNI TACGTA 1 cut(s) 1220
BstUI CGCG 1 cut(s) 1756
BstV2I GAAGAC 5 cut(s) 2618, 3040, 3570, 3896, 4024
BstX2I RGATCY 4 cut(s) 931, 1816, 2524, 3067
BstYI RGATCY 4 cut(s) 931, 1816, 2524, 3067
Bsu15I ATCGAT 1 cut(s) 2835
Bsu36I CCTNAGG 2 cut(s) 2510, 2805
BsuI GTATCC 1 cut(s) 3543
BsuRI GGCC 4 cut(s) 1461, 2484, 2789, 4161
BsuTUI ATCGAT 1 cut(s) 2835
BtgI CCRYGG 1 cut(s) 445
BtgZI GCGATG 1 cut(s) 127
BtrI CACGTC 1 cut(s) 4043
BtsI GCAGTG 2 cut(s) 543, 1806
CaiI CAGNNNCTG 2 cut(s) 776, 1691
CciI TCATGA 2 cut(s) 2734, 4281
CfoI GCGC 7 cut(s) 134, 632, 1263, 1758, 2785, 2947, 4335
Cfr13I GGNCC 5 cut(s) 449, 1823, 2041, 2482, 2713
ClaI ATCGAT 1 cut(s) 2835
CseI GACGC 1 cut(s) 3134
Csp6I GTAC 5 cut(s) 844, 3352, 3397, 4077, 4243
CviQI GTAC 5 cut(s) 844, 3352, 3397, 4077, 4243
DdeI CTNAG 8 cut(s) 868, 1296, 1646, 2105, 2510, 2779, 2805, 3255
DraIII CACNNNGTG 2 cut(s) 1457, 2699
EaeI YGGCCR 1 cut(s) 4159
Eam1104I CTCTTC 3 cut(s) 286, 1905, 4074
EarI CTCTTC 3 cut(s) 286, 1905, 4074
Ecl136II GAGCTC 3 cut(s) 220, 867, 2999
Eco105I TACGTA 1 cut(s) 1220
Eco24I GRGCYC 4 cut(s) 222, 869, 3001, 3441
Eco31I GGTCTC 1 cut(s) 4261
Eco32I GATATC 1 cut(s) 2023
Eco47I GGWCC 4 cut(s) 449, 1823, 2041, 2713
Eco53kI GAGCTC 3 cut(s) 220, 867, 2999
Eco57I CTGAAG 6 cut(s) 921, 1761, 2028, 2740, 3440, 3636
Eco81I CCTNAGG 2 cut(s) 2510, 2805
Eco88I CYCGRG 2 cut(s) 215, 4004
EcoICRI GAGCTC 3 cut(s) 220, 867, 2999
EcoO109I RGGNCCY 1 cut(s) 2713
EcoRII CCWGG 6 cut(s) 323, 550, 580, 1234, 1835, 2043
EcoRV GATATC 1 cut(s) 2023
EcoT22I ATGCAT 3 cut(s) 1007, 3307, 3318
EcoT38I GRGCYC 4 cut(s) 222, 869, 3001, 3441
Esp3I CGTCTC 3 cut(s) 364, 400, 866
FalI AAGNNNNNCTT 2 cut(s) 3269, 3301
FaqI GGGAC 2 cut(s) 1035, 2971
FauI CCCGC 2 cut(s) 1539, 2806
FauNDI CATATG 1 cut(s) 173
FblI GTMKAC 1 cut(s) 4045
FriOI GRGCYC 4 cut(s) 222, 869, 3001, 3441
FspBI CTAG 6 cut(s) 399, 1025, 1850, 2114, 2466, 3549
FspI TGCGCA 1 cut(s) 1262
GlaI GCGC 7 cut(s) 133, 631, 1262, 1757, 2784, 2946, 4334
HaeII RGCGCY 2 cut(s) 633, 4336
HaeIII GGCC 4 cut(s) 1461, 2484, 2789, 4161
HapII CCGG 3 cut(s) 363, 480, 4175
HgaI GACGC 1 cut(s) 3134
HhaI GCGC 7 cut(s) 134, 632, 1263, 1758, 2785, 2947, 4335
Hin1I GRCGYC 1 cut(s) 3145
Hin6I GCGC 7 cut(s) 132, 630, 1261, 1756, 2783, 2945, 4333
HinP1I GCGC 7 cut(s) 132, 630, 1261, 1756, 2783, 2945, 4333
HincII GTYRAC 2 cut(s) 1057, 3912
HindII GTYRAC 2 cut(s) 1057, 3912
HindIII AAGCTT 3 cut(s) 1588, 2330, 2964
HpaII CCGG 3 cut(s) 363, 480, 4175
HphI GGTGA 1 cut(s) 3939
Hpy166II GTNNAC 8 cut(s) 1057, 1721, 2349, 3060, 3854, 3912, 3947, 4046
Hpy8I GTNNAC 8 cut(s) 1057, 1721, 2349, 3060, 3854, 3912, 3947, 4046
HpyAV CCTTC 8 cut(s) 66, 945, 1154, 1330, 2912, 3220, 3244, 3415
HpyCH4III ACNGT 7 cut(s) 358, 394, 625, 758, 1489, 2506, 3772
HpyCH4IV ACGT 6 cut(s) 903, 1219, 1662, 2430, 3169, 4042
HpyF3I CTNAG 8 cut(s) 868, 1296, 1646, 2105, 2510, 2779, 2805, 3255
HpySE526I ACGT 6 cut(s) 903, 1219, 1662, 2430, 3169, 4042
Hsp92I GRCGYC 1 cut(s) 3145
HspAI GCGC 7 cut(s) 132, 630, 1261, 1756, 2783, 2945, 4333
Kpn2I TCCGGA 1 cut(s) 362
KpnI GGTACC 1 cut(s) 3400
LmnI GCTCC 7 cut(s) 327, 553, 773, 1932, 2871, 3004, 4415
MaeI CTAG 6 cut(s) 399, 1025, 1850, 2114, 2466, 3549
MaeII ACGT 6 cut(s) 903, 1219, 1662, 2430, 3169, 4042
MaeIII GTNAC 5 cut(s) 702, 899, 2286, 3837, 4370
MbiI CCGCTC 2 cut(s) 1546, 3259
MfeI CAATTG 5 cut(s) 1673, 1881, 2256, 3404, 3558
MflI RGATCY 4 cut(s) 931, 1816, 2524, 3067
MlsI TGGCCA 1 cut(s) 4161
MluNI TGGCCA 1 cut(s) 4161
MlyI GAGTC 6 cut(s) 375, 1307, 1609, 2087, 2993, 4445
MmeI TCCRAC 7 cut(s) 479, 909, 1017, 1254, 1578, 3581, 4459
Mox20I TGGCCA 1 cut(s) 4161
Mph1103I ATGCAT 3 cut(s) 1007, 3307, 3318
MroI TCCGGA 1 cut(s) 362
MroXI GAANNNNTTC 4 cut(s) 1507, 1749, 2742, 4068
MscI TGGCCA 1 cut(s) 4161
MslI CAYNNNNRTG 6 cut(s) 34, 693, 1050, 1248, 2585, 3844
Msp20I TGGCCA 1 cut(s) 4161
MspA1I CMGCKG 3 cut(s) 2252, 2522, 3981
MspI CCGG 3 cut(s) 363, 480, 4175
MspR9I CCNGG 6 cut(s) 325, 552, 582, 1236, 1837, 2045
MunI CAATTG 5 cut(s) 1673, 1881, 2256, 3404, 3558
Mva1269I GAATGC 1 cut(s) 1239
MvaI CCWGG 6 cut(s) 325, 552, 582, 1236, 1837, 2045
MvnI CGCG 1 cut(s) 1756
NdeI CATATG 1 cut(s) 173
NheI GCTAGC 1 cut(s) 2465
NmuCI GTSAC 2 cut(s) 3837, 4370
NsbI TGCGCA 1 cut(s) 1262
NsiI ATGCAT 3 cut(s) 1007, 3307, 3318
NspI RCATGY 4 cut(s) 2928, 3050, 3352, 3683
OliI CACNNNNGTG 1 cut(s) 2585
PaeR7I CTCGAG 2 cut(s) 215, 4004
PagI TCATGA 2 cut(s) 2734, 4281
PciI ACATGT 3 cut(s) 3046, 3348, 3679
PcsI WCGNNNNNNNCGW 4 cut(s) 150, 213, 354, 2841
PctI GAATGC 1 cut(s) 1239
PdmI GAANNNNTTC 4 cut(s) 1507, 1749, 2742, 4068
Pfl23II CGTACG 1 cut(s) 4076
PflFI GACNNNGTC 1 cut(s) 1297
PflMI CCANNNNNTGG 4 cut(s) 1592, 1675, 2828, 3212
PfoI TCCNGGA 2 cut(s) 323, 580
PleI GAGTC 6 cut(s) 374, 1306, 1609, 2086, 2992, 4445
PpsI GAGTC 6 cut(s) 374, 1306, 1609, 2086, 2992, 4445
Ppu21I YACGTR 1 cut(s) 1220
PpuMI RGGWCCY 1 cut(s) 2713
PscI ACATGT 3 cut(s) 3046, 3348, 3679
PshBI ATTAAT 1 cut(s) 3987
PsiI TTATAA 2 cut(s) 1281, 3152
Psp124BI GAGCTC 3 cut(s) 222, 869, 3001
Psp1406I AACGTT 1 cut(s) 2430
Psp5II RGGWCCY 1 cut(s) 2713
Psp6I CCWGG 6 cut(s) 323, 550, 580, 1234, 1835, 2043
PspGI CCWGG 6 cut(s) 323, 550, 580, 1234, 1835, 2043
PspLI CGTACG 1 cut(s) 4076
PspPI GGNCC 5 cut(s) 449, 1823, 2041, 2482, 2713
PspPPI RGGWCCY 1 cut(s) 2713
PspXI VCTCGAGB 1 cut(s) 215
PstNI CAGNNNCTG 2 cut(s) 776, 1691
PsuI RGATCY 4 cut(s) 931, 1816, 2524, 3067
PsyI GACNNNGTC 1 cut(s) 1297
PvuII CAGCTG 1 cut(s) 2252
RsaI GTAC 5 cut(s) 845, 3353, 3398, 4078, 4244
RsaNI GTAC 5 cut(s) 844, 3352, 3397, 4077, 4243
RseI CAYNNNNRTG 6 cut(s) 34, 693, 1050, 1248, 2585, 3844
SacI GAGCTC 3 cut(s) 222, 869, 3001
Sau96I GGNCC 5 cut(s) 449, 1823, 2041, 2482, 2713
SchI GAGTC 6 cut(s) 375, 1307, 1609, 2087, 2993, 4445
ScrFI CCNGG 6 cut(s) 325, 552, 582, 1236, 1837, 2045
SfcI CTRYAG 1 cut(s) 2634
Sfr274I CTCGAG 2 cut(s) 215, 4004
SinI GGWCC 4 cut(s) 449, 1823, 2041, 2713
SlaI CTCGAG 2 cut(s) 215, 4004
SmiMI CAYNNNNRTG 6 cut(s) 34, 693, 1050, 1248, 2585, 3844
SmlI CTYRAG 9 cut(s) 215, 2055, 2171, 2688, 2948, 3503, 4004, 4238, 4349
SmoI CTYRAG 9 cut(s) 215, 2055, 2171, 2688, 2948, 3503, 4004, 4238, 4349
SnaBI TACGTA 1 cut(s) 1220
SpeI ACTAGT 1 cut(s) 1024
SspI AATATT 4 cut(s) 1167, 1392, 2911, 3662
SspMI CTAG 6 cut(s) 399, 1025, 1850, 2114, 2466, 3549
SstI GAGCTC 3 cut(s) 222, 869, 3001
StyD4I CCNGG 6 cut(s) 323, 550, 580, 1234, 1835, 2043
TaaI ACNGT 7 cut(s) 358, 394, 625, 758, 1489, 2506, 3772
TaiI ACGT 6 cut(s) 906, 1222, 1665, 2433, 3172, 4045
TaqI TCGA 8 cut(s) 207, 216, 818, 2835, 3890, 4005, 4092, 4210
TaqII GACCGA 1 cut(s) 4035
TatI WGTACW 2 cut(s) 843, 4242
TauI GCSGC 3 cut(s) 77, 467, 1799
TseFI GTSAC 2 cut(s) 3837, 4370
Tsp45I GTSAC 2 cut(s) 3837, 4370
TspGWI ACGGA 4 cut(s) 277, 462, 707, 4094
Tth111I GACNNNGTC 1 cut(s) 1297
Van91I CCANNNNNTGG 4 cut(s) 1592, 1675, 2828, 3212
VneI GTGCAC 1 cut(s) 1719
VpaK11BI GGWCC 4 cut(s) 449, 1823, 2041, 2713
VspI ATTAAT 1 cut(s) 3987
XapI RAATTY 9 cut(s) 236, 945, 1341, 1407, 1864, 1874, 1997, 2459, 4363
XceI RCATGY 4 cut(s) 2928, 3050, 3352, 3683
XcmI CCANNNNNNNNNTGG 2 cut(s) 3483, 4305
XhoI CTCGAG 2 cut(s) 215, 4004
XmiI GTMKAC 1 cut(s) 4045
XmnI GAANNNNTTC 4 cut(s) 1507, 1749, 2742, 4068
XspI CTAG 6 cut(s) 399, 1025, 1850, 2114, 2466, 3549
Zsp2I ATGCAT 3 cut(s) 1007, 3307, 3318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.