Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 328 |
| AciI | CCGC | 3 cut(s) | 323, 469, 666 |
| AcsI | RAATTY | 1 cut(s) | 116 |
| AcuI | CTGAAG | 1 cut(s) | 708 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 101, 319 |
| AgsI | TTSAA | 7 cut(s) | 54, 61, 161, 546, 553, 559, 637 |
| AluBI | AGCT | 9 cut(s) | 19, 177, 506, 525, 572, 641, 720, 742, 889 |
| AluI | AGCT | 9 cut(s) | 19, 177, 506, 525, 572, 641, 720, 742, 889 |
| Alw26I | GTCTC | 3 cut(s) | 22, 222, 459 |
| AoxI | GGCC | 2 cut(s) | 451, 895 |
| ApeKI | GCWGC | 5 cut(s) | 506, 641, 705, 734, 742 |
| ApoI | RAATTY | 1 cut(s) | 116 |
| AspLEI | GCGC | 1 cut(s) | 700 |
| AspS9I | GGNCC | 2 cut(s) | 105, 196 |
| AsuHPI | GGTGA | 1 cut(s) | 666 |
| AvaII | GGWCC | 2 cut(s) | 105, 196 |
| BbvI | GCAGC | 5 cut(s) | 493, 628, 717, 721, 729 |
| BccI | CCATC | 3 cut(s) | 421, 560, 614 |
| BcoDI | GTCTC | 3 cut(s) | 22, 222, 459 |
| BfmI | CTRYAG | 3 cut(s) | 178, 316, 420 |
| BisI | GCNGC | 5 cut(s) | 507, 642, 706, 735, 743 |
| BlpI | GCTNAGC | 1 cut(s) | 738 |
| BlsI | GCNGC | 5 cut(s) | 508, 643, 707, 736, 744 |
| Bme18I | GGWCC | 2 cut(s) | 105, 196 |
| BmgT120I | GGNCC | 2 cut(s) | 105, 196 |
| BmiI | GGNNCC | 1 cut(s) | 106 |
| BmsI | GCATC | 1 cut(s) | 519 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 456, 488 |
| BpmI | CTGGAG | 1 cut(s) | 894 |
| Bpu10I | CCTNAGC | 1 cut(s) | 857 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 738 |
| BpuEI | CTTGAG | 1 cut(s) | 46 |
| BsaI | GGTCTC | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 2 cut(s) | 584, 693 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 321, 351, 597, 627 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 101, 319 |
| Bse1I | ACTGG | 1 cut(s) | 250 |
| BseDI | CCNNGG | 2 cut(s) | 584, 693 |
| BseGI | GGATG | 6 cut(s) | 121, 309, 432, 534, 625, 841 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 101, 319 |
| BseMII | CTCAG | 2 cut(s) | 214, 729 |
| BseNI | ACTGG | 1 cut(s) | 250 |
| BseXI | GCAGC | 5 cut(s) | 493, 628, 717, 721, 729 |
| BshFI | GGCC | 2 cut(s) | 453, 897 |
| BslFI | GGGAC | 1 cut(s) | 118 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 101, 319 |
| BsmAI | GTCTC | 3 cut(s) | 22, 222, 459 |
| BsmBI | CGTCTC | 1 cut(s) | 222 |
| BsmFI | GGGAC | 1 cut(s) | 118 |
| BsmI | GAATGC | 2 cut(s) | 826, 868 |
| BsnI | GGCC | 2 cut(s) | 453, 897 |
| Bso31I | GGTCTC | 1 cut(s) | 459 |
| Bsp143I | GATC | 1 cut(s) | 71 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 738 |
| Bsp19I | CCATGG | 1 cut(s) | 584 |
| BspACI | CCGC | 3 cut(s) | 323, 469, 666 |
| BspANI | GGCC | 2 cut(s) | 453, 897 |
| BspCNI | CTCAG | 2 cut(s) | 213, 730 |
| BspLI | GGNNCC | 1 cut(s) | 106 |
| BspMAI | CTGCAG | 1 cut(s) | 320 |
| BspTNI | GGTCTC | 1 cut(s) | 459 |
| BsrI | ACTGG | 1 cut(s) | 250 |
| BssECI | CCNNGG | 2 cut(s) | 584, 693 |
| BssMI | GATC | 1 cut(s) | 71 |
| BssT1I | CCWWGG | 2 cut(s) | 584, 693 |
| Bst4CI | ACNGT | 1 cut(s) | 286 |
| Bst6I | CTCTTC | 2 cut(s) | 586, 780 |
| BstC8I | GCNNGC | 4 cut(s) | 732, 747, 760, 844 |
| BstDEI | CTNAG | 3 cut(s) | 200, 738, 857 |
| BstDSI | CCRYGG | 1 cut(s) | 584 |
| BstF5I | GGATG | 6 cut(s) | 121, 309, 432, 534, 625, 841 |
| BstHHI | GCGC | 1 cut(s) | 700 |
| BstKTI | GATC | 1 cut(s) | 74 |
| BstMAI | GTCTC | 3 cut(s) | 22, 222, 459 |
| BstMBI | GATC | 1 cut(s) | 71 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 689, 755, 821, 848 |
| BstSFI | CTRYAG | 3 cut(s) | 178, 316, 420 |
| BstV1I | GCAGC | 5 cut(s) | 493, 628, 717, 721, 729 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 525 |
| BsuRI | GGCC | 2 cut(s) | 453, 897 |
| BtgI | CCRYGG | 1 cut(s) | 584 |
| BtgZI | GCGATG | 1 cut(s) | 830 |
| BtsCI | GGATG | 6 cut(s) | 121, 309, 432, 534, 625, 841 |
| BtsI | GCAGTG | 1 cut(s) | 387 |
| BtsIMutI | CAGTG | 1 cut(s) | 387 |
| Cac8I | GCNNGC | 4 cut(s) | 732, 747, 760, 844 |
| CfoI | GCGC | 1 cut(s) | 700 |
| Cfr13I | GGNCC | 2 cut(s) | 105, 196 |
| CviAII | CATG | 5 cut(s) | 461, 585, 680, 763, 779 |
| DdeI | CTNAG | 3 cut(s) | 200, 738, 857 |
| DpnI | GATC | 1 cut(s) | 73 |
| DpnII | GATC | 1 cut(s) | 71 |
| Eam1104I | CTCTTC | 2 cut(s) | 586, 780 |
| EarI | CTCTTC | 2 cut(s) | 586, 780 |
| Eco130I | CCWWGG | 2 cut(s) | 584, 693 |
| Eco31I | GGTCTC | 1 cut(s) | 459 |
| Eco47I | GGWCC | 2 cut(s) | 105, 196 |
| Eco57I | CTGAAG | 1 cut(s) | 708 |
| EcoO109I | RGGNCCY | 2 cut(s) | 105, 196 |
| EcoT14I | CCWWGG | 2 cut(s) | 584, 693 |
| ErhI | CCWWGG | 2 cut(s) | 584, 693 |
| Esp3I | CGTCTC | 1 cut(s) | 222 |
| FaeI | CATG | 5 cut(s) | 464, 588, 683, 766, 782 |
| FaqI | GGGAC | 1 cut(s) | 118 |
| FatI | CATG | 5 cut(s) | 460, 584, 679, 762, 778 |
| FauI | CCCGC | 1 cut(s) | 316 |
| FauNDI | CATATG | 2 cut(s) | 236, 436 |
| FblI | GTMKAC | 1 cut(s) | 328 |
| Fnu4HI | GCNGC | 5 cut(s) | 507, 642, 706, 735, 743 |
| FokI | GGATG | 6 cut(s) | 108, 296, 439, 541, 632, 848 |
| Fsp4HI | GCNGC | 5 cut(s) | 507, 642, 706, 735, 743 |
| GlaI | GCGC | 1 cut(s) | 699 |
| GluI | GCNGC | 5 cut(s) | 507, 642, 706, 735, 743 |
| GsuI | CTGGAG | 1 cut(s) | 894 |
| HaeIII | GGCC | 2 cut(s) | 453, 897 |
| HhaI | GCGC | 1 cut(s) | 700 |
| Hin1II | CATG | 5 cut(s) | 464, 588, 683, 766, 782 |
| Hin6I | GCGC | 1 cut(s) | 698 |
| HinP1I | GCGC | 1 cut(s) | 698 |
| HincII | GTYRAC | 1 cut(s) | 329 |
| HindII | GTYRAC | 1 cut(s) | 329 |
| HinfI | GANTC | 5 cut(s) | 37, 57, 190, 334, 538 |
| HphI | GGTGA | 1 cut(s) | 666 |
| Hpy166II | GTNNAC | 3 cut(s) | 282, 329, 884 |
| Hpy188I | TCNGA | 2 cut(s) | 203, 796 |
| Hpy188III | TCNNGA | 5 cut(s) | 54, 130, 153, 194, 873 |
| Hpy8I | GTNNAC | 3 cut(s) | 282, 329, 884 |
| HpyAV | CCTTC | 2 cut(s) | 235, 620 |
| HpyCH4III | ACNGT | 1 cut(s) | 286 |
| HpyCH4V | TGCA | 5 cut(s) | 262, 318, 434, 644, 868 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 689, 755, 821, 848 |
| HpyF3I | CTNAG | 3 cut(s) | 200, 738, 857 |
| Hsp92II | CATG | 5 cut(s) | 464, 588, 683, 766, 782 |
| HspAI | GCGC | 1 cut(s) | 698 |
| Kzo9I | GATC | 1 cut(s) | 71 |
| LmnI | GCTCC | 2 cut(s) | 569, 605 |
| Lsp1109I | GCAGC | 5 cut(s) | 493, 628, 717, 721, 729 |
| LweI | GCATC | 1 cut(s) | 519 |
| MalI | GATC | 1 cut(s) | 73 |
| MboI | GATC | 1 cut(s) | 71 |
| MboII | GAAGA | 4 cut(s) | 575, 603, 648, 767 |
| MfeI | CAATTG | 1 cut(s) | 145 |
| MlyI | GAGTC | 2 cut(s) | 199, 532 |
| MseI | TTAA | 5 cut(s) | 21, 165, 254, 488, 770 |
| MunI | CAATTG | 1 cut(s) | 145 |
| Mva1269I | GAATGC | 2 cut(s) | 826, 868 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 689, 755, 821, 848 |
| NcoI | CCATGG | 1 cut(s) | 584 |
| NdeI | CATATG | 2 cut(s) | 236, 436 |
| NdeII | GATC | 1 cut(s) | 71 |
| NlaIII | CATG | 5 cut(s) | 464, 588, 683, 766, 782 |
| NlaIV | GGNNCC | 1 cut(s) | 106 |
| PctI | GAATGC | 2 cut(s) | 826, 868 |
| PfeI | GAWTC | 3 cut(s) | 37, 57, 334 |
| PkrI | GCNGC | 5 cut(s) | 508, 643, 707, 736, 744 |
| PleI | GAGTC | 2 cut(s) | 198, 532 |
| PpsI | GAGTC | 2 cut(s) | 198, 532 |
| PpuMI | RGGWCCY | 2 cut(s) | 105, 196 |
| Psp5II | RGGWCCY | 2 cut(s) | 105, 196 |
| PspN4I | GGNNCC | 1 cut(s) | 106 |
| PspPI | GGNCC | 2 cut(s) | 105, 196 |
| PspPPI | RGGWCCY | 2 cut(s) | 105, 196 |
| PstI | CTGCAG | 1 cut(s) | 320 |
| SalI | GTCGAC | 1 cut(s) | 327 |
| SaqAI | TTAA | 5 cut(s) | 21, 165, 254, 488, 770 |
| SatI | GCNGC | 5 cut(s) | 507, 642, 706, 735, 743 |
| Sau3AI | GATC | 1 cut(s) | 71 |
| Sau96I | GGNCC | 2 cut(s) | 105, 196 |
| SchI | GAGTC | 2 cut(s) | 199, 532 |
| SfaNI | GCATC | 1 cut(s) | 519 |
| SfcI | CTRYAG | 3 cut(s) | 178, 316, 420 |
| SinI | GGWCC | 2 cut(s) | 105, 196 |
| SmlI | CTYRAG | 1 cut(s) | 25 |
| SmoI | CTYRAG | 1 cut(s) | 25 |
| SsiI | CCGC | 3 cut(s) | 323, 469, 666 |
| StyI | CCWWGG | 2 cut(s) | 584, 693 |
| TaaI | ACNGT | 1 cut(s) | 286 |
| TaqI | TCGA | 2 cut(s) | 70, 328 |
| TfiI | GAWTC | 3 cut(s) | 37, 57, 334 |
| Tru1I | TTAA | 5 cut(s) | 21, 165, 254, 488, 770 |
| Tru9I | TTAA | 5 cut(s) | 21, 165, 254, 488, 770 |
| TscAI | CASTG | 1 cut(s) | 387 |
| TseI | GCWGC | 5 cut(s) | 506, 641, 705, 734, 742 |
| TspDTI | ATGAA | 6 cut(s) | 110, 339, 576, 767, 833, 901 |
| TspGWI | ACGGA | 1 cut(s) | 280 |
| TspRI | CASTG | 1 cut(s) | 387 |
| VpaK11BI | GGWCC | 2 cut(s) | 105, 196 |
| XapI | RAATTY | 1 cut(s) | 116 |
| XmiI | GTMKAC | 1 cut(s) | 328 |