disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 6 - 97 | 2.7e-19 | Rx N-terminal domain |
| NB-ARC | PF00931 | 187 - 362 | 2.4e-32 | NB-ARC domain |
| WHD_DRP | PF23559 | 445 - 515 | 1.7e-22 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 566 - 901 | 8.4e-36 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 577 - 622 | 3.8e-06 | Leucine rich repeat |
| LRR_R13L1-DRL21 | PF25019 | 705 - 827 | 3.1e-23 | R13L1/DRL21 LRRs |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1309 |
| Acc36I | ACCTGC | 1 cut(s) | 1309 |
| AccB1I | GGYRCC | 4 cut(s) | 785, 944, 1297, 2070 |
| AccBSI | CCGCTC | 1 cut(s) | 618 |
| AccI | GTMKAC | 1 cut(s) | 1951 |
| AclWI | GGATC | 1 cut(s) | 1621 |
| AcoI | YGGCCR | 2 cut(s) | 376, 1435 |
| AcsI | RAATTY | 8 cut(s) | 110, 195, 439, 805, 1724, 1780, 2293, 2314 |
| AcuI | CTGAAG | 5 cut(s) | 915, 2036, 2669, 2723, 2886 |
| AcyI | GRCGYC | 1 cut(s) | 945 |
| AfaI | GTAC | 5 cut(s) | 227, 310, 1702, 2021, 2591 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 641, 2081, 2364, 2438 |
| AjnI | CCWGG | 1 cut(s) | 2211 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 68, 100, 2130, 2162 |
| AleI | CACNNNNGTG | 1 cut(s) | 1733 |
| Alw21I | GWGCWC | 3 cut(s) | 300, 1539, 1836 |
| Alw26I | GTCTC | 2 cut(s) | 462, 626 |
| Alw44I | GTGCAC | 2 cut(s) | 1535, 1832 |
| AlwI | GGATC | 1 cut(s) | 1621 |
| AoxI | GGCC | 7 cut(s) | 117, 183, 376, 672, 1435, 2807, 2891 |
| ApaLI | GTGCAC | 2 cut(s) | 1535, 1832 |
| ApeKI | GCWGC | 4 cut(s) | 1157, 1689, 2183, 2691 |
| ApoI | RAATTY | 8 cut(s) | 110, 195, 439, 805, 1724, 1780, 2293, 2314 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1765, 1797, 2454, 2486 |
| AseI | ATTAAT | 1 cut(s) | 848 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 132, 1806 |
| AspLEI | GCGC | 4 cut(s) | 462, 947, 1654, 1923 |
| AspS9I | GGNCC | 4 cut(s) | 673, 742, 1661, 2808 |
| AsuHPI | GGTGA | 9 cut(s) | 85, 806, 979, 1130, 1631, 1720, 1835, 2199, 2201 |
| AsuII | TTCGAA | 1 cut(s) | 1406 |
| AvaII | GGWCC | 2 cut(s) | 742, 1661 |
| AxyI | CCTNAGG | 1 cut(s) | 1838 |
| BaeGI | GKGCMC | 3 cut(s) | 1539, 1836, 2075 |
| BalI | TGGCCA | 1 cut(s) | 1437 |
| BanI | GGYRCC | 4 cut(s) | 785, 944, 1297, 2070 |
| BbsI | GAAGAC | 3 cut(s) | 903, 2065, 2268 |
| Bbv12I | GWGCWC | 3 cut(s) | 300, 1539, 1836 |
| BbvCI | CCTCAGC | 1 cut(s) | 6 |
| BbvI | GCAGC | 4 cut(s) | 1144, 1676, 2170, 2678 |
| BccI | CCATC | 8 cut(s) | 226, 640, 782, 1493, 1739, 2060, 2403, 2837 |
| BciT130I | CCWGG | 1 cut(s) | 2213 |
| BclI | TGATCA | 1 cut(s) | 492 |
| BcoDI | GTCTC | 2 cut(s) | 462, 626 |
| BfaI | CTAG | 4 cut(s) | 878, 1241, 2063, 2747 |
| BfmI | CTRYAG | 1 cut(s) | 1547 |
| BfoI | RGCGCY | 1 cut(s) | 948 |
| BfuAI | ACCTGC | 1 cut(s) | 1309 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 680, 2079, 2790 |
| BisI | GCNGC | 4 cut(s) | 1158, 1690, 2184, 2692 |
| BlpI | GCTNAGC | 1 cut(s) | 456 |
| BlsI | GCNGC | 4 cut(s) | 1159, 1691, 2185, 2693 |
| BmcAI | AGTACT | 2 cut(s) | 310, 2021 |
| Bme1390I | CCNGG | 1 cut(s) | 2213 |
| Bme18I | GGWCC | 2 cut(s) | 742, 1661 |
| BmgT120I | GGNCC | 4 cut(s) | 673, 742, 1661, 2808 |
| BmiI | GGNNCC | 5 cut(s) | 744, 787, 946, 1299, 2072 |
| BmrFI | CCNGG | 1 cut(s) | 2213 |
| BmsI | GCATC | 9 cut(s) | 79, 526, 548, 1304, 1996, 2317, 2350, 2549, 2860 |
| BpiI | GAAGAC | 3 cut(s) | 903, 2065, 2268 |
| BpmI | CTGGAG | 2 cut(s) | 224, 1531 |
| Bpu10I | CCTNAGC | 2 cut(s) | 6, 507 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 456 |
| Bpu14I | TTCGAA | 1 cut(s) | 1406 |
| BpuEI | CTTGAG | 1 cut(s) | 167 |
| Bsa29I | ATCGAT | 1 cut(s) | 1023 |
| BsaAI | YACGTR | 1 cut(s) | 1700 |
| BsaHI | GRCGYC | 1 cut(s) | 945 |
| BsaI | GGTCTC | 1 cut(s) | 626 |
| BsaJI | CCNNGG | 4 cut(s) | 1167, 1614, 2211, 2212 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 57, 87 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 641, 2081, 2364, 2438 |
| Bse1I | ACTGG | 4 cut(s) | 42, 948, 2369, 2469 |
| Bse21I | CCTNAGG | 1 cut(s) | 1838 |
| Bse3DI | GCAATG | 1 cut(s) | 1467 |
| BseBI | CCWGG | 1 cut(s) | 2213 |
| BseCI | ATCGAT | 1 cut(s) | 1023 |
| BseDI | CCNNGG | 4 cut(s) | 1167, 1614, 2211, 2212 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 641, 2081, 2364, 2438 |
| BseMI | GCAATG | 1 cut(s) | 1467 |
| BseMII | CTCAG | 9 cut(s) | 315, 498, 534, 1271, 1829, 1970, 2164, 2247, 2877 |
| BseNI | ACTGG | 4 cut(s) | 42, 948, 2369, 2469 |
| BseRI | GAGGAG | 4 cut(s) | 221, 349, 480, 998 |
| BseSI | GKGCMC | 3 cut(s) | 1539, 1836, 2075 |
| BseXI | GCAGC | 4 cut(s) | 1144, 1676, 2170, 2678 |
| BsgI | GTGCAG | 1 cut(s) | 2301 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2306 |
| BshFI | GGCC | 7 cut(s) | 119, 185, 378, 674, 1437, 2809, 2893 |
| BshNI | GGYRCC | 4 cut(s) | 785, 944, 1297, 2070 |
| BshVI | ATCGAT | 1 cut(s) | 1023 |
| BsiEI | CGRYCG | 1 cut(s) | 2306 |
| BsiHKAI | GWGCWC | 3 cut(s) | 300, 1539, 1836 |
| BslFI | GGGAC | 1 cut(s) | 2437 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 641, 2081, 2364, 2438 |
| BsmAI | GTCTC | 2 cut(s) | 462, 626 |
| BsmFI | GGGAC | 1 cut(s) | 2437 |
| BsmI | GAATGC | 1 cut(s) | 1574 |
| BsnI | GGCC | 7 cut(s) | 119, 185, 378, 674, 1437, 2809, 2893 |
| Bso31I | GGTCTC | 1 cut(s) | 626 |
| Bsp119I | TTCGAA | 1 cut(s) | 1406 |
| Bsp1286I | GDGCHC | 4 cut(s) | 300, 1539, 1836, 2075 |
| Bsp143I | GATC | 7 cut(s) | 420, 492, 756, 1020, 1353, 1626, 1693 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 456 |
| Bsp19I | CCATGG | 1 cut(s) | 1167 |
| BspANI | GGCC | 7 cut(s) | 119, 185, 378, 674, 1437, 2809, 2893 |
| BspCNI | CTCAG | 9 cut(s) | 316, 499, 535, 1272, 1830, 1969, 2163, 2246, 2878 |
| BspDI | ATCGAT | 1 cut(s) | 1023 |
| BspHI | TCATGA | 2 cut(s) | 403, 2344 |
| BspLI | GGNNCC | 5 cut(s) | 744, 787, 946, 1299, 2072 |
| BspMAI | CTGCAG | 1 cut(s) | 1551 |
| BspMI | ACCTGC | 1 cut(s) | 1309 |
| BspPI | GGATC | 1 cut(s) | 1621 |
| BspQI | GCTCTTC | 1 cut(s) | 288 |
| BspT104I | TTCGAA | 1 cut(s) | 1406 |
| BspT107I | GGYRCC | 4 cut(s) | 785, 944, 1297, 2070 |
| BspTNI | GGTCTC | 1 cut(s) | 626 |
| BsrBI | CCGCTC | 1 cut(s) | 618 |
| BsrDI | GCAATG | 1 cut(s) | 1467 |
| BsrI | ACTGG | 4 cut(s) | 42, 948, 2369, 2469 |
| BssECI | CCNNGG | 4 cut(s) | 1167, 1614, 2211, 2212 |
| BssMI | GATC | 7 cut(s) | 420, 492, 756, 1020, 1353, 1626, 1693 |
| BssNI | GRCGYC | 1 cut(s) | 945 |
| BssT1I | CCWWGG | 2 cut(s) | 1167, 1614 |
| Bst2UI | CCWGG | 1 cut(s) | 2213 |
| Bst4CI | ACNGT | 3 cut(s) | 302, 1226, 2451 |
| Bst6I | CTCTTC | 6 cut(s) | 63, 288, 1239, 2601, 2619, 2631 |
| BstACI | GRCGYC | 1 cut(s) | 945 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1918, 2870 |
| BstBAI | YACGTR | 1 cut(s) | 1700 |
| BstBI | TTCGAA | 1 cut(s) | 1406 |
| BstC8I | GCNNGC | 1 cut(s) | 1650 |
| BstDSI | CCRYGG | 1 cut(s) | 1167 |
| BstEII | GGTNACC | 1 cut(s) | 967 |
| BstH2I | RGCGCY | 1 cut(s) | 948 |
| BstHHI | GCGC | 4 cut(s) | 462, 947, 1654, 1923 |
| BstKTI | GATC | 7 cut(s) | 423, 495, 759, 1023, 1356, 1629, 1696 |
| BstMAI | GTCTC | 2 cut(s) | 462, 626 |
| BstMBI | GATC | 7 cut(s) | 420, 492, 756, 1020, 1353, 1626, 1693 |
| BstMCI | CGRYCG | 1 cut(s) | 2306 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 208, 295, 680, 951, 1189, 1918, 2079, 2790, 2870 |
| BstNI | CCWGG | 1 cut(s) | 2213 |
| BstPI | GGTNACC | 1 cut(s) | 967 |
| BstSCI | CCNGG | 1 cut(s) | 2211 |
| BstSFI | CTRYAG | 1 cut(s) | 1547 |
| BstSLI | GKGCMC | 3 cut(s) | 1539, 1836, 2075 |
| BstSNI | TACGTA | 1 cut(s) | 1700 |
| BstV1I | GCAGC | 4 cut(s) | 1144, 1676, 2170, 2678 |
| BstV2I | GAAGAC | 3 cut(s) | 903, 2065, 2268 |
| BstX2I | RGATCY | 1 cut(s) | 1626 |
| BstYI | RGATCY | 1 cut(s) | 1626 |
| Bsu15I | ATCGAT | 1 cut(s) | 1023 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1838 |
| BsuRI | GGCC | 7 cut(s) | 119, 185, 378, 674, 1437, 2809, 2893 |
| BsuTUI | ATCGAT | 1 cut(s) | 1023 |
| BtgI | CCRYGG | 1 cut(s) | 1167 |
| BtsI | GCAGTG | 2 cut(s) | 2352, 2708 |
| BtsIMutI | CAGTG | 4 cut(s) | 258, 955, 2352, 2708 |
| BveI | ACCTGC | 1 cut(s) | 1309 |
| Cac8I | GCNNGC | 1 cut(s) | 1650 |
| CciI | TCATGA | 2 cut(s) | 403, 2344 |
| CfoI | GCGC | 4 cut(s) | 462, 947, 1654, 1923 |
| Cfr13I | GGNCC | 4 cut(s) | 673, 742, 1661, 2808 |
| ClaI | ATCGAT | 1 cut(s) | 1023 |
| CseI | GACGC | 1 cut(s) | 2193 |
| Csp6I | GTAC | 5 cut(s) | 226, 309, 1701, 2020, 2590 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 890, 925 |
| CviQI | GTAC | 5 cut(s) | 226, 309, 1701, 2020, 2590 |
| DinI | GGCGCC | 1 cut(s) | 946 |
| DpnI | GATC | 7 cut(s) | 422, 494, 758, 1022, 1355, 1628, 1695 |
| DpnII | GATC | 7 cut(s) | 420, 492, 756, 1020, 1353, 1626, 1693 |
| DraI | TTTAAA | 1 cut(s) | 810 |
| EaeI | YGGCCR | 2 cut(s) | 376, 1435 |
| Eam1104I | CTCTTC | 6 cut(s) | 63, 288, 1239, 2601, 2619, 2631 |
| EarI | CTCTTC | 6 cut(s) | 63, 288, 1239, 2601, 2619, 2631 |
| EciI | GGCGGA | 1 cut(s) | 1619 |
| Eco105I | TACGTA | 1 cut(s) | 1700 |
| Eco130I | CCWWGG | 2 cut(s) | 1167, 1614 |
| Eco147I | AGGCCT | 1 cut(s) | 2893 |
| Eco31I | GGTCTC | 1 cut(s) | 626 |
| Eco32I | GATATC | 1 cut(s) | 2393 |
| Eco47I | GGWCC | 2 cut(s) | 742, 1661 |
| Eco57I | CTGAAG | 5 cut(s) | 915, 2036, 2669, 2723, 2886 |
| Eco81I | CCTNAGG | 1 cut(s) | 1838 |
| Eco91I | GGTNACC | 1 cut(s) | 967 |
| EcoO65I | GGTNACC | 1 cut(s) | 967 |
| EcoRI | GAATTC | 1 cut(s) | 110 |
| EcoRII | CCWGG | 1 cut(s) | 2211 |
| EcoRV | GATATC | 1 cut(s) | 2393 |
| EcoT14I | CCWWGG | 2 cut(s) | 1167, 1614 |
| EcoT22I | ATGCAT | 3 cut(s) | 541, 1527, 2552 |
| EgeI | GGCGCC | 1 cut(s) | 946 |
| EheI | GGCGCC | 1 cut(s) | 946 |
| ErhI | CCWWGG | 2 cut(s) | 1167, 1614 |
| FaqI | GGGAC | 1 cut(s) | 2437 |
| FauI | CCCGC | 1 cut(s) | 2179 |
| FbaI | TGATCA | 1 cut(s) | 492 |
| FblI | GTMKAC | 1 cut(s) | 1951 |
| Fnu4HI | GCNGC | 4 cut(s) | 1158, 1690, 2184, 2692 |
| Fsp4HI | GCNGC | 4 cut(s) | 1158, 1690, 2184, 2692 |
| FspBI | CTAG | 4 cut(s) | 878, 1241, 2063, 2747 |
| GlaI | GCGC | 4 cut(s) | 461, 946, 1653, 1922 |
| GluI | GCNGC | 4 cut(s) | 1158, 1690, 2184, 2692 |
| GsuI | CTGGAG | 2 cut(s) | 224, 1531 |
| HaeII | RGCGCY | 1 cut(s) | 948 |
| HaeIII | GGCC | 7 cut(s) | 119, 185, 378, 674, 1437, 2809, 2893 |
| HgaI | GACGC | 1 cut(s) | 2193 |
| HhaI | GCGC | 4 cut(s) | 462, 947, 1654, 1923 |
| Hin1I | GRCGYC | 1 cut(s) | 945 |
| Hin6I | GCGC | 4 cut(s) | 460, 945, 1652, 1921 |
| HinP1I | GCGC | 4 cut(s) | 460, 945, 1652, 1921 |
| HinfI | GANTC | 7 cut(s) | 133, 172, 1109, 1718, 1739, 2321, 2642 |
| HphI | GGTGA | 9 cut(s) | 85, 806, 979, 1130, 1631, 1720, 1835, 2199, 2201 |
| Hpy166II | GTNNAC | 7 cut(s) | 891, 1537, 1664, 1738, 1834, 1952, 2849 |
| Hpy188III | TCNNGA | 5 cut(s) | 29, 404, 1510, 1811, 2345 |
| Hpy8I | GTNNAC | 7 cut(s) | 891, 1537, 1664, 1738, 1834, 1952, 2849 |
| Hpy99I | CGWCG | 2 cut(s) | 65, 2099 |
| HpyAV | CCTTC | 7 cut(s) | 172, 1417, 1484, 1652, 1808, 2626, 2904 |
| HpyCH4III | ACNGT | 3 cut(s) | 302, 1226, 2451 |
| HpyCH4IV | ACGT | 6 cut(s) | 60, 189, 219, 1699, 1916, 2531 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 208, 295, 680, 951, 1189, 1918, 2079, 2790, 2870 |
| HpySE526I | ACGT | 6 cut(s) | 60, 189, 219, 1699, 1916, 2531 |
| Hsp92I | GRCGYC | 1 cut(s) | 945 |
| HspAI | GCGC | 4 cut(s) | 460, 945, 1652, 1921 |
| KasI | GGCGCC | 1 cut(s) | 944 |
| Ksp22I | TGATCA | 1 cut(s) | 492 |
| Kzo9I | GATC | 7 cut(s) | 420, 492, 756, 1020, 1353, 1626, 1693 |
| LguI | GCTCTTC | 1 cut(s) | 288 |
| LmnI | GCTCC | 4 cut(s) | 157, 208, 1004, 1237 |
| Lsp1109I | GCAGC | 4 cut(s) | 1144, 1676, 2170, 2678 |
| LweI | GCATC | 9 cut(s) | 79, 526, 548, 1304, 1996, 2317, 2350, 2549, 2860 |
| MaeI | CTAG | 4 cut(s) | 878, 1241, 2063, 2747 |
| MaeII | ACGT | 6 cut(s) | 60, 189, 219, 1699, 1916, 2531 |
| MalI | GATC | 7 cut(s) | 422, 494, 758, 1022, 1355, 1628, 1695 |
| MbiI | CCGCTC | 1 cut(s) | 618 |
| MboI | GATC | 7 cut(s) | 420, 492, 756, 1020, 1353, 1626, 1693 |
| MfeI | CAATTG | 2 cut(s) | 677, 1757 |
| MflI | RGATCY | 1 cut(s) | 1626 |
| MhlI | GDGCHC | 4 cut(s) | 300, 1539, 1836, 2075 |
| MlsI | TGGCCA | 1 cut(s) | 1437 |
| MluNI | TGGCCA | 1 cut(s) | 1437 |
| Mly113I | GGCGCC | 1 cut(s) | 945 |
| MlyI | GAGTC | 1 cut(s) | 1733 |
| MmeI | TCCRAC | 3 cut(s) | 43, 1086, 2479 |
| Mox20I | TGGCCA | 1 cut(s) | 1437 |
| Mph1103I | ATGCAT | 3 cut(s) | 541, 1527, 2552 |
| MroXI | GAANNNNTTC | 2 cut(s) | 132, 1806 |
| MscI | TGGCCA | 1 cut(s) | 1437 |
| MslI | CAYNNNNRTG | 6 cut(s) | 20, 402, 1669, 1733, 1992, 2545 |
| Msp20I | TGGCCA | 1 cut(s) | 1437 |
| MspA1I | CMGCKG | 1 cut(s) | 1689 |
| MspR9I | CCNGG | 1 cut(s) | 2213 |
| MunI | CAATTG | 2 cut(s) | 677, 1757 |
| Mva1269I | GAATGC | 1 cut(s) | 1574 |
| MvaI | CCWGG | 1 cut(s) | 2213 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 208, 295, 680, 951, 1189, 1918, 2079, 2790, 2870 |
| NarI | GGCGCC | 1 cut(s) | 945 |
| NcoI | CCATGG | 1 cut(s) | 1167 |
| NdeII | GATC | 7 cut(s) | 420, 492, 756, 1020, 1353, 1626, 1693 |
| NlaIV | GGNNCC | 5 cut(s) | 744, 787, 946, 1299, 2072 |
| NmuCI | GTSAC | 5 cut(s) | 794, 967, 1009, 1386, 2205 |
| NsiI | ATGCAT | 3 cut(s) | 541, 1527, 2552 |
| NspV | TTCGAA | 1 cut(s) | 1406 |
| OliI | CACNNNNGTG | 1 cut(s) | 1733 |
| PagI | TCATGA | 2 cut(s) | 403, 2344 |
| PaqCI | CACCTGC | 1 cut(s) | 1309 |
| PasI | CCCWGGG | 1 cut(s) | 2212 |
| PceI | AGGCCT | 1 cut(s) | 2893 |
| PciSI | GCTCTTC | 1 cut(s) | 288 |
| PctI | GAATGC | 1 cut(s) | 1574 |
| PdmI | GAANNNNTTC | 2 cut(s) | 132, 1806 |
| PfeI | GAWTC | 6 cut(s) | 133, 172, 1109, 1718, 2321, 2642 |
| PkrI | GCNGC | 4 cut(s) | 1159, 1691, 2185, 2693 |
| PleI | GAGTC | 1 cut(s) | 1733 |
| PluTI | GGCGCC | 1 cut(s) | 948 |
| PpsI | GAGTC | 1 cut(s) | 1733 |
| Ppu21I | YACGTR | 1 cut(s) | 1700 |
| PshBI | ATTAAT | 1 cut(s) | 848 |
| Psp6I | CCWGG | 1 cut(s) | 2211 |
| PspEI | GGTNACC | 1 cut(s) | 967 |
| PspGI | CCWGG | 1 cut(s) | 2211 |
| PspN4I | GGNNCC | 5 cut(s) | 744, 787, 946, 1299, 2072 |
| PspPI | GGNCC | 4 cut(s) | 673, 742, 1661, 2808 |
| PstI | CTGCAG | 1 cut(s) | 1551 |
| PsuI | RGATCY | 1 cut(s) | 1626 |
| PvuII | CAGCTG | 1 cut(s) | 1689 |
| RsaI | GTAC | 5 cut(s) | 227, 310, 1702, 2021, 2591 |
| RsaNI | GTAC | 5 cut(s) | 226, 309, 1701, 2020, 2590 |
| RseI | CAYNNNNRTG | 6 cut(s) | 20, 402, 1669, 1733, 1992, 2545 |
| SapI | GCTCTTC | 1 cut(s) | 288 |
| SatI | GCNGC | 4 cut(s) | 1158, 1690, 2184, 2692 |
| Sau3AI | GATC | 7 cut(s) | 420, 492, 756, 1020, 1353, 1626, 1693 |
| Sau96I | GGNCC | 4 cut(s) | 673, 742, 1661, 2808 |
| ScaI | AGTACT | 2 cut(s) | 310, 2021 |
| SchI | GAGTC | 1 cut(s) | 1733 |
| ScrFI | CCNGG | 1 cut(s) | 2213 |
| SduI | GDGCHC | 4 cut(s) | 300, 1539, 1836, 2075 |
| SfaNI | GCATC | 9 cut(s) | 79, 526, 548, 1304, 1996, 2317, 2350, 2549, 2860 |
| SfcI | CTRYAG | 1 cut(s) | 1547 |
| SfoI | GGCGCC | 1 cut(s) | 946 |
| SfuI | TTCGAA | 1 cut(s) | 1406 |
| SinI | GGWCC | 2 cut(s) | 742, 1661 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 20, 402, 1669, 1733, 1992, 2545 |
| SmlI | CTYRAG | 1 cut(s) | 146 |
| SmoI | CTYRAG | 1 cut(s) | 146 |
| SnaBI | TACGTA | 1 cut(s) | 1700 |
| SseBI | AGGCCT | 1 cut(s) | 2893 |
| SspDI | GGCGCC | 1 cut(s) | 944 |
| SspI | AATATT | 2 cut(s) | 963, 1062 |
| SspMI | CTAG | 4 cut(s) | 878, 1241, 2063, 2747 |
| StuI | AGGCCT | 1 cut(s) | 2893 |
| StyD4I | CCNGG | 1 cut(s) | 2211 |
| StyI | CCWWGG | 2 cut(s) | 1167, 1614 |
| TaaI | ACNGT | 3 cut(s) | 302, 1226, 2451 |
| TaiI | ACGT | 6 cut(s) | 63, 192, 222, 1702, 1919, 2534 |
| TaqI | TCGA | 6 cut(s) | 30, 126, 976, 1023, 1406, 2457 |
| TatI | WGTACW | 2 cut(s) | 308, 2019 |
| TfiI | GAWTC | 6 cut(s) | 133, 172, 1109, 1718, 2321, 2642 |
| TscAI | CASTG | 4 cut(s) | 265, 955, 2359, 2715 |
| TseFI | GTSAC | 5 cut(s) | 794, 967, 1009, 1386, 2205 |
| TseI | GCWGC | 4 cut(s) | 1157, 1689, 2183, 2691 |
| Tsp45I | GTSAC | 5 cut(s) | 794, 967, 1009, 1386, 2205 |
| TspDTI | ATGAA | 9 cut(s) | 386, 420, 450, 1581, 1668, 1834, 2115, 2361, 2495 |
| TspGWI | ACGGA | 3 cut(s) | 10, 34, 374 |
| TspRI | CASTG | 4 cut(s) | 265, 955, 2359, 2715 |
| VneI | GTGCAC | 2 cut(s) | 1535, 1832 |
| VpaK11BI | GGWCC | 2 cut(s) | 742, 1661 |
| VspI | ATTAAT | 1 cut(s) | 848 |
| XapI | RAATTY | 8 cut(s) | 110, 195, 439, 805, 1724, 1780, 2293, 2314 |
| XmiI | GTMKAC | 1 cut(s) | 1951 |
| XmnI | GAANNNNTTC | 2 cut(s) | 132, 1806 |
| XspI | CTAG | 4 cut(s) | 878, 1241, 2063, 2747 |
| ZrmI | AGTACT | 2 cut(s) | 310, 2021 |
| Zsp2I | ATGCAT | 3 cut(s) | 541, 1527, 2552 |