Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029275

Physical Location & Seq

Genomic Coordinates Reverse (-)

18110974 .. 18114078

Gene Structure 3105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g14710.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGCTTCTAGACCCTTCTCTCCTGCTCAATTTATACTCTCCTGCTCTCCCCCTCTCTCTCACTCTCACCTCGCTTTTTCCTGATTGCCCATCTTCTTTCTCAATCTACTTTCTCTCTCTAAGGTGCTCTGCAACTTCGTCAATCATGTATCGCTTCGCCACTAACCTTGCCTCCAAAGCCAGGGTGGCTAGGAACAGTTCTCAACAGATTGGTAGTAAATTGATTTCGAGAAGGAACTATGCGGCGAAAGAAATCAGATTCGGTGTTGAAGCCCGGGCCGGGATGCTTAGGGGTGTGGAAGAGCTCGCTGATGCTGTTAAAGTCACAATGGGGCCAAAAGGGCGCAATGTTGTTCTAGAACAAAGCTTTGGTGCCCCTAAAGTGACCAAGGACGGTGTCACTGTAGCAAAGAGTATTGAGTTCAAGGATAAAGTCAAGAACATTGGTGCTAGTCTTGTAAAGCAGGTTGCAAATGCTACAAACGATGCAGCAGGAGATGGTACCACTTGTGCTACAGTCCTTGCCCGCGCTATATTTACTGAAGGATGCAAGTCAGTGGCGGCTGGAATGAATGCTATGGACCTAAGACGAGGCATTTCAATGGCAGTTGATTCCGTTGTTGCAAACTTGAAGAGTAGGGCTCGGATGATCAGCACATCTGAAGAAATAGCTCAGGTTGGTACAATATCAGCAAACGGAGAGAGGGAAATTGGTGAGCTAATAGCTAAGGCTATGGAGAAAGTTGGCAAAGAGGGTGTTATAACCATAGCTGATGGAAAAACACTGTATAACGAGTTGGAGGTCGTTGAAGGAATGAAGCTGGATAGGGGCTACATATCCCCTTATTTTATCACCAATCCTAAGAACCAAAAATGTGAATTAGAAGACCCACTCATCCTGATCCATGAGAAGAAACTCTCAAATCTAAATTCTATAGTGAAAATATTAGAGTTGGCCTTGCAGAAACAAAGACCTCTTGTGATTGTTGCGGAAGATGTGGAAAGTGAAGCTCTAGCGACGCTCATTATAAACAAGCTTCGTGCTGGAATTAAGGTTTGTGCAATTAAAGCCCCTGGATTTGGAGAAAACAGGAAGGCAAATTTGCAGGACCTAGCCATTCTTACGGGAGCCCAGGTAATAACTGAAGAGCTTGGTCTGAACGTTGAAAAAGTGGGAGTAGAAACACTTGGAACATGCAAAAGGATTACGGTATCAAAAGATGACACCGTCATTCTTGATGGGGCTGGTGACAAGAAAGCCATTGAAGAAAGATGTGAACAGCTGAGATCATCAATTGAATTGAGCACTTCTGATTATGACAAAGAGAAGTTACAAGAGCGCCTTGCGAAGATTTCTGGTGGTGTTGCCGTCTTAAAGGTTGTGGTGGAGCTAGCGAAGCAGAAGTTGGTGAAAAGAAGGATAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

476

Amino Acids

51.34

Weight (kDa)

9.04

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029275)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g16770 pycom10g14710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	761, 1028
Acc36I	ACCTGC	1 cut(s)	454
Acc65I	GGTACC	1 cut(s)	500
AccB1I	GGYRCC	2 cut(s)	371, 500
AccII	CGCG	1 cut(s)	528
AciI	CCGC	4 cut(s)	242, 526, 560, 989
AclI	AACGTT	1 cut(s)	1161
AclWI	GGATC	1 cut(s)	895
AcsI	RAATTY	2 cut(s)	928, 1099
AcuI	CTGAAG	3 cut(s)	561, 681, 1164
AfaI	GTAC	2 cut(s)	502, 682
AfiI	CCNNNNNNNGG	3 cut(s)	180, 279, 1079
AgsI	TTSAA	8 cut(s)	269, 424, 600, 631, 809, 1166, 1265, 1298
AjnI	CCWGG	3 cut(s)	179, 1072, 1131
AjuI	GAANNNNNNNTTGG	4 cut(s)	351, 383, 1388, 1420
Alw21I	GWGCWC	3 cut(s)	128, 306, 1307
AlwI	GGATC	1 cut(s)	895
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	3 cut(s)	276, 332, 954
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	2 cut(s)	928, 1099
Asp718I	GGTACC	1 cut(s)	500
AspLEI	GCGC	3 cut(s)	345, 530, 1341
AspS9I	GGNCC	4 cut(s)	276, 332, 580, 1108
AsuC2I	CCSGG	3 cut(s)	274, 275, 280
AsuHPI	GGTGA	5 cut(s)	58, 725, 844, 1259, 1420
AsuNHI	GCTAGC	1 cut(s)	1390
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	580, 1108
BaeGI	GKGCMC	1 cut(s)	376
BanI	GGYRCC	2 cut(s)	371, 500
BanII	GRGCYC	3 cut(s)	306, 643, 1132
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	3 cut(s)	128, 306, 1307
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	4 cut(s)	97, 491, 767, 1232
BceAI	ACGGC	1 cut(s)	1352
BciT130I	CCWGG	3 cut(s)	181, 1074, 1133
BclI	TGATCA	1 cut(s)	648
BcnI	CCSGG	3 cut(s)	274, 275, 280
BfaI	CTAG	7 cut(s)	8, 189, 356, 450, 1013, 1112, 1391
BfmI	CTRYAG	3 cut(s)	402, 513, 933
BfoI	RGCGCY	1 cut(s)	1342
BfuAI	ACCTGC	1 cut(s)	454
BglI	GCCNNNNNGGC	2 cut(s)	185, 340
BisI	GCNGC	3 cut(s)	243, 489, 561
BlsI	GCNGC	3 cut(s)	244, 490, 562
Bme1390I	CCNGG	6 cut(s)	181, 274, 275, 280, 1074, 1133
Bme18I	GGWCC	2 cut(s)	580, 1108
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	4 cut(s)	276, 332, 580, 1108
BmiI	GGNNCC	4 cut(s)	333, 373, 502, 1129
BmrFI	CCNGG	6 cut(s)	181, 274, 275, 280, 1074, 1133
BmsI	GCATC	4 cut(s)	273, 301, 475, 536
BmtI	GCTAGC	1 cut(s)	1394
BpiI	GAAGAC	1 cut(s)	891
BplI	GAGNNNNNCTC	2 cut(s)	625, 657
Bpu10I	CCTNAGC	3 cut(s)	287, 672, 726
BpuMI	CCSGG	3 cut(s)	274, 275, 280
BsaJI	CCNNGG	5 cut(s)	180, 273, 387, 1072, 1131
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 1119, 1149
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 279, 1079
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	3 cut(s)	181, 1074, 1133
BseDI	CCNNGG	5 cut(s)	180, 273, 387, 1072, 1131
BseGI	GGATG	4 cut(s)	288, 551, 651, 894
BseLI	CCNNNNNNNGG	3 cut(s)	180, 279, 1079
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	686, 1274
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	278, 334, 956
BshNI	GGYRCC	2 cut(s)	371, 500
BsiHKAI	GWGCWC	3 cut(s)	128, 306, 1307
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	274, 279
BslI	CCNNNNNNNGG	3 cut(s)	180, 279, 1079
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	3 cut(s)	278, 334, 956
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	6 cut(s)	128, 306, 376, 643, 1132, 1307
Bsp143I	GATC	3 cut(s)	648, 900, 1286
BspACI	CCGC	4 cut(s)	242, 526, 560, 989
BspANI	GGCC	3 cut(s)	278, 334, 956
BspCNI	CTCAG	2 cut(s)	685, 1275
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	4 cut(s)	333, 373, 502, 1129
BspMI	ACCTGC	1 cut(s)	454
BspOI	GCTAGC	1 cut(s)	1394
BspPI	GGATC	1 cut(s)	895
BspQI	GCTCTTC	2 cut(s)	294, 1140
BspT107I	GGYRCC	2 cut(s)	371, 500
BsrDI	GCAATG	1 cut(s)	352
BssECI	CCNNGG	5 cut(s)	180, 273, 387, 1072, 1131
BssMI	GATC	3 cut(s)	648, 900, 1286
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	3 cut(s)	181, 1074, 1133
Bst4CI	ACNGT	7 cut(s)	197, 395, 403, 517, 786, 1210, 1228
Bst6I	CTCTTC	3 cut(s)	294, 626, 1140
BstC8I	GCNNGC	3 cut(s)	306, 526, 1392
BstDEI	CTNAG	7 cut(s)	119, 287, 584, 672, 726, 861, 1283
BstF5I	GGATG	4 cut(s)	288, 551, 651, 894
BstFNI	CGCG	1 cut(s)	528
BstH2I	RGCGCY	1 cut(s)	1342
BstHHI	GCGC	3 cut(s)	345, 530, 1341
BstKTI	GATC	3 cut(s)	651, 903, 1289
BstMBI	GATC	3 cut(s)	648, 900, 1286
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 185, 340, 1067, 1396
BstNI	CCWGG	3 cut(s)	181, 1074, 1133
BstNSI	RCATGY	1 cut(s)	1197
BstSCI	CCNGG	6 cut(s)	179, 272, 273, 278, 1072, 1131
BstSFI	CTRYAG	3 cut(s)	402, 513, 933
BstSLI	GKGCMC	1 cut(s)	376
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	1 cut(s)	500
BstV2I	GAAGAC	1 cut(s)	891
BsuRI	GGCC	3 cut(s)	278, 334, 956
BtsCI	GGATG	4 cut(s)	288, 551, 651, 894
BtsIMutI	CAGTG	3 cut(s)	399, 561, 782
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	3 cut(s)	306, 526, 1392
CfoI	GCGC	3 cut(s)	345, 530, 1341
Cfr13I	GGNCC	4 cut(s)	276, 332, 580, 1108
Cfr9I	CCCGGG	1 cut(s)	273
CseI	GACGC	1 cut(s)	1027
Csp6I	GTAC	2 cut(s)	501, 681
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	3 cut(s)	145, 905, 1194
CviQI	GTAC	2 cut(s)	501, 681
DdeI	CTNAG	7 cut(s)	119, 287, 584, 672, 726, 861, 1283
DpnI	GATC	3 cut(s)	650, 902, 1288
DpnII	GATC	3 cut(s)	648, 900, 1286
Eam1104I	CTCTTC	3 cut(s)	294, 626, 1140
EarI	CTCTTC	3 cut(s)	294, 626, 1140
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	3 cut(s)	306, 643, 1132
Eco47I	GGWCC	2 cut(s)	580, 1108
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	3 cut(s)	561, 681, 1164
Eco88I	CYCGRG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	1108
EcoRII	CCWGG	3 cut(s)	179, 1072, 1131
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	3 cut(s)	306, 643, 1132
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	3 cut(s)	148, 908, 1197
FalI	AAGNNNNNCTT	2 cut(s)	1326, 1358
FatI	CATG	3 cut(s)	144, 904, 1193
FauI	CCCGC	1 cut(s)	533
FbaI	TGATCA	1 cut(s)	648
Fnu4HI	GCNGC	3 cut(s)	243, 489, 561
FokI	GGATG	4 cut(s)	295, 558, 658, 881
FriOI	GRGCYC	3 cut(s)	306, 643, 1132
Fsp4HI	GCNGC	3 cut(s)	243, 489, 561
FspBI	CTAG	7 cut(s)	8, 189, 356, 450, 1013, 1112, 1391
GlaI	GCGC	3 cut(s)	344, 529, 1340
GluI	GCNGC	3 cut(s)	243, 489, 561
HaeII	RGCGCY	1 cut(s)	1342
HaeIII	GGCC	3 cut(s)	278, 334, 956
HapII	CCGG	2 cut(s)	274, 279
HgaI	GACGC	1 cut(s)	1027
HhaI	GCGC	3 cut(s)	345, 530, 1341
Hin1II	CATG	3 cut(s)	148, 908, 1197
Hin6I	GCGC	3 cut(s)	343, 528, 1339
HinP1I	GCGC	3 cut(s)	343, 528, 1339
HindIII	AAGCTT	2 cut(s)	364, 1034
HinfI	GANTC	2 cut(s)	258, 611
HpaII	CCGG	2 cut(s)	274, 279
HphI	GGTGA	5 cut(s)	58, 725, 844, 1259, 1420
Hpy166II	GTNNAC	1 cut(s)	1277
Hpy188I	TCNGA	5 cut(s)	257, 645, 661, 1158, 1312
Hpy188III	TCNNGA	7 cut(s)	8, 80, 228, 356, 436, 898, 1235
Hpy8I	GTNNAC	1 cut(s)	1277
Hpy99I	CGWCG	1 cut(s)	1021
HpyAV	CCTTC	6 cut(s)	24, 225, 536, 803, 1087, 1410
HpyCH4III	ACNGT	7 cut(s)	197, 395, 403, 517, 786, 1210, 1228
HpyCH4IV	ACGT	1 cut(s)	1161
HpyCH4V	TGCA	9 cut(s)	131, 470, 488, 549, 623, 961, 1061, 1105, 1197
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 185, 340, 1067, 1396
HpyF3I	CTNAG	7 cut(s)	119, 287, 584, 672, 726, 861, 1283
HpySE526I	ACGT	1 cut(s)	1161
Hsp92II	CATG	3 cut(s)	148, 908, 1197
HspAI	GCGC	3 cut(s)	343, 528, 1339
KpnI	GGTACC	1 cut(s)	504
Ksp22I	TGATCA	1 cut(s)	648
Kzo9I	GATC	3 cut(s)	648, 900, 1286
LguI	GCTCTTC	2 cut(s)	294, 1140
LmnI	GCTCC	2 cut(s)	1127, 1387
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	4 cut(s)	273, 301, 475, 536
MaeI	CTAG	7 cut(s)	8, 189, 356, 450, 1013, 1112, 1391
MaeII	ACGT	1 cut(s)	1161
MaeIII	GTNAC	5 cut(s)	322, 382, 397, 1247, 1329
MalI	GATC	3 cut(s)	650, 902, 1288
MboI	GATC	3 cut(s)	648, 900, 1286
MfeI	CAATTG	1 cut(s)	1293
MhlI	GDGCHC	6 cut(s)	128, 306, 376, 643, 1132, 1307
MmeI	TCCRAC	1 cut(s)	777
MnlI	CCTC	8 cut(s)	62, 79, 181, 584, 696, 745, 793, 984
MseI	TTAA	4 cut(s)	318, 1050, 1065, 1373
MslI	CAYNNNNRTG	1 cut(s)	599
MspA1I	CMGCKG	1 cut(s)	1282
MspI	CCGG	2 cut(s)	274, 279
MspR9I	CCNGG	6 cut(s)	181, 274, 275, 280, 1074, 1133
MunI	CAATTG	1 cut(s)	1293
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	3 cut(s)	181, 1074, 1133
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	5 cut(s)	176, 185, 340, 1067, 1396
NciI	CCSGG	3 cut(s)	274, 275, 280
NdeII	GATC	3 cut(s)	648, 900, 1286
NheI	GCTAGC	1 cut(s)	1390
NlaIII	CATG	3 cut(s)	148, 908, 1197
NlaIV	GGNNCC	4 cut(s)	333, 373, 502, 1129
NmuCI	GTSAC	4 cut(s)	322, 382, 397, 1247
NspI	RCATGY	1 cut(s)	1197
PciSI	GCTCTTC	2 cut(s)	294, 1140
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	258, 611
PflFI	GACNNNGTC	2 cut(s)	395, 1226
PkrI	GCNGC	3 cut(s)	244, 490, 562
PpuMI	RGGWCCY	1 cut(s)	1108
PsiI	TTATAA	2 cut(s)	761, 1028
Psp124BI	GAGCTC	1 cut(s)	306
Psp1406I	AACGTT	1 cut(s)	1161
Psp5II	RGGWCCY	1 cut(s)	1108
Psp6I	CCWGG	3 cut(s)	179, 1072, 1131
PspGI	CCWGG	3 cut(s)	179, 1072, 1131
PspN4I	GGNNCC	4 cut(s)	333, 373, 502, 1129
PspPI	GGNCC	4 cut(s)	276, 332, 580, 1108
PspPPI	RGGWCCY	1 cut(s)	1108
PsyI	GACNNNGTC	2 cut(s)	395, 1226
PvuII	CAGCTG	1 cut(s)	1282
RsaI	GTAC	2 cut(s)	502, 682
RsaNI	GTAC	2 cut(s)	501, 681
RseI	CAYNNNNRTG	1 cut(s)	599
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	2 cut(s)	294, 1140
SaqAI	TTAA	4 cut(s)	318, 1050, 1065, 1373
SatI	GCNGC	3 cut(s)	243, 489, 561
Sau3AI	GATC	3 cut(s)	648, 900, 1286
Sau96I	GGNCC	4 cut(s)	276, 332, 580, 1108
ScrFI	CCNGG	6 cut(s)	181, 274, 275, 280, 1074, 1133
SduI	GDGCHC	6 cut(s)	128, 306, 376, 643, 1132, 1307
SfaNI	GCATC	4 cut(s)	273, 301, 475, 536
SfcI	CTRYAG	3 cut(s)	402, 513, 933
SinI	GGWCC	2 cut(s)	580, 1108
SmaI	CCCGGG	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	599
SrfI	GCCCGGGC	1 cut(s)	275
SsiI	CCGC	4 cut(s)	242, 526, 560, 989
SspI	AATATT	1 cut(s)	945
SspMI	CTAG	7 cut(s)	8, 189, 356, 450, 1013, 1112, 1391
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	6 cut(s)	179, 272, 273, 278, 1072, 1131
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	7 cut(s)	197, 395, 403, 517, 786, 1210, 1228
TaiI	ACGT	1 cut(s)	1164
TaqI	TCGA	1 cut(s)	227
TauI	GCSGC	2 cut(s)	245, 563
TfiI	GAWTC	2 cut(s)	258, 611
Tru1I	TTAA	4 cut(s)	318, 1050, 1065, 1373
Tru9I	TTAA	4 cut(s)	318, 1050, 1065, 1373
TscAI	CASTG	3 cut(s)	406, 561, 789
TseFI	GTSAC	4 cut(s)	322, 382, 397, 1247
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	4 cut(s)	322, 382, 397, 1247
TspDTI	ATGAA	2 cut(s)	584, 830
TspGWI	ACGGA	2 cut(s)	604, 711
TspMI	CCCGGG	1 cut(s)	273
TspRI	CASTG	3 cut(s)	406, 561, 789
Tth111I	GACNNNGTC	2 cut(s)	395, 1226
VpaK11BI	GGWCC	2 cut(s)	580, 1108
XapI	RAATTY	2 cut(s)	928, 1099
XbaI	TCTAGA	2 cut(s)	7, 355
XceI	RCATGY	1 cut(s)	1197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmaI	CCCGGG	1 cut(s)	273
XspI	CTAG	7 cut(s)	8, 189, 356, 450, 1013, 1112, 1391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.