Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029278

Physical Location & Seq

Genomic Coordinates Forward (+)

19372684 .. 19373513

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAATTGGCCAAGCATTTCTCCAAGCAGCTCTTCGACAGCTTGCATTTTACGCAAAGCTTTGTGAAGAGGGAGGAATTTTACCGGCGGTTTGTATACAGCTACGTGAATCTGTTTAAATCGCAGCACTCGAAAGCAGAAAAAGGAGGAGAATCGGACGCACCGAAAAAGCCGAAAGCTGTTGGTCCTCAGCAAGCTGCTTTGGGGCCAAAAGCTGCTGGTGGCATTAGCAGCTCTTCGAGTGAGGATGAAGATTTAGTCGATAGCAAGAGGAAAAGGTTGGAGCTTGCTTGGCTCCCCAAAGTTCTCGAGCCAGCTCTTCAATTGTGCAGATGGGCTCTGCCCACCCCTGCAGGAAATGAAGTGGGAAACAAAACCCCACCCACCACTCGATCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

9.52

Isoelectric Point (pI)

62.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029278)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g18730 pycom10g16180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	323
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	9, 206
ApeKI	GCWGC	5 cut(s)	28, 124, 197, 215, 231
ApoI	RAATTY	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	185, 206
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	340
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	5 cut(s)	40, 136, 184, 202, 243
BccI	CCATC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	400
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	5 cut(s)	29, 125, 198, 216, 232
BlsI	GCNGC	5 cut(s)	30, 126, 199, 217, 233
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	185, 206
BmiI	GGNNCC	2 cut(s)	207, 296
Bpu10I	CCTNAGC	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	106
Bse118I	RCCGGY	1 cut(s)	84
BseGI	GGATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	5 cut(s)	40, 136, 184, 202, 243
BsgI	GTGCAG	1 cut(s)	349
BshFI	GGCC	2 cut(s)	11, 208
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	85
BsnI	GGCC	2 cut(s)	11, 208
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	392
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	11, 208
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	207, 296
BspMAI	CTGCAG	1 cut(s)	355
BspQI	GCTCTTC	3 cut(s)	38, 241, 324
BsrFI	RCCGGY	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	84
BssMI	GATC	1 cut(s)	392
BssNAI	GTATAC	1 cut(s)	97
Bst1107I	GTATAC	1 cut(s)	97
Bst6I	CTCTTC	4 cut(s)	38, 62, 241, 324
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	4 cut(s)	44, 195, 288, 315
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 231, 292
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	5 cut(s)	40, 136, 184, 202, 243
BstZ17I	GTATAC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	11, 208
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	4 cut(s)	44, 195, 288, 315
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	185, 206
CseI	GACGC	1 cut(s)	167
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
DraI	TTTAAA	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	4 cut(s)	38, 62, 241, 324
EarI	CTCTTC	4 cut(s)	38, 62, 241, 324
Eco24I	GRGCYC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	340
FaiI	YATR	1 cut(s)	97
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	5 cut(s)	29, 125, 198, 216, 232
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	5 cut(s)	29, 125, 198, 216, 232
FspBI	CTAG	1 cut(s)	400
GluI	GCNGC	5 cut(s)	29, 125, 198, 216, 232
HaeIII	GGCC	2 cut(s)	11, 208
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	1 cut(s)	167
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	2 cut(s)	109, 152
HpaII	CCGG	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	46, 330, 353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 231, 292
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	392
LguI	GCTCTTC	3 cut(s)	38, 241, 324
LmnI	GCTCC	2 cut(s)	283, 300
LpnPI	CCDG	5 cut(s)	98, 204, 327, 339, 363
Lsp1109I	GCAGC	5 cut(s)	40, 136, 184, 202, 243
MaeI	CTAG	1 cut(s)	400
MaeII	ACGT	1 cut(s)	105
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	5 cut(s)	25, 79, 228, 263, 311
MfeI	CAATTG	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	340
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	3 cut(s)	5, 77, 323
MluNI	TGGCCA	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	63, 67, 140, 198, 238, 264
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	323
MwoI	GCNNNNNNNGC	3 cut(s)	52, 231, 292
NdeII	GATC	1 cut(s)	392
NlaIV	GGNNCC	2 cut(s)	207, 296
PaeR7I	CTCGAG	1 cut(s)	308
PciSI	GCTCTTC	3 cut(s)	38, 241, 324
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 161
PfeI	GAWTC	2 cut(s)	109, 152
PkrI	GCNGC	5 cut(s)	30, 126, 199, 217, 233
Ppu21I	YACGTR	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	207, 296
PspPI	GGNCC	2 cut(s)	185, 206
PstI	CTGCAG	1 cut(s)	355
SapI	GCTCTTC	3 cut(s)	38, 241, 324
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	5 cut(s)	29, 125, 198, 216, 232
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	2 cut(s)	185, 206
SbfI	CCTGCAGG	1 cut(s)	355
SdaI	CCTGCAGG	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse8387I	CCTGCAGG	1 cut(s)	355
Sse9I	AATT	3 cut(s)	5, 77, 323
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	400
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	6 cut(s)	36, 131, 239, 261, 309, 391
TasI	AATT	3 cut(s)	5, 77, 323
TfiI	GAWTC	2 cut(s)	109, 152
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseI	GCWGC	5 cut(s)	28, 124, 197, 215, 231
TspDTI	ATGAA	2 cut(s)	264, 375
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	77
XhoI	CTCGAG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.