Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0024670

Physical Location & Seq

Genomic Coordinates Forward (+)

20069490 .. 20071124

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGAGGACCTCAAAGAGAAGCTGCTTTCACCAAAAGTCCCAAAACCTGCATCAGCTGTAAACCTTCGCGAAGCATCGTATCGATCATCGGCCTTTGGAAGATGCTCTTATATGGTTAAGGTAGAGTATGTCAATGCGCGTGTGGCTTCGACTCTGGAGGGTACCAACTACCAGGTGGAGGTTGCTACATATAAGTACTTTGTCAATGGAAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

73

Amino Acids

8.14

Weight (kDa)

9.52

Isoelectric Point (pI)

26.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024670)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g16850
rosa_samantha	Rh2AG487000 Rh2BG499400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
Acc65I	GGTACC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	161
AccII	CGCG	2 cut(s)	69, 139
AfaI	GTAC	2 cut(s)	163, 197
AfiI	CCNNNNNNNGG	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	22, 56
AluI	AGCT	2 cut(s)	22, 56
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	22
Asp718I	GGTACC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	9
BciT130I	CCWGG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	55
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	3 cut(s)	59, 83, 92
BpmI	CTGGAG	1 cut(s)	176
Bsa29I	ATCGAT	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	9
Bsh1236I	CGCG	2 cut(s)	69, 139
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	83
Bsp68I	TCGCGA	1 cut(s)	69
BspANI	GGCC	1 cut(s)	92
BspDI	ATCGAT	1 cut(s)	82
BspFNI	CGCG	2 cut(s)	69, 139
BspLI	GGNNCC	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	161
BssMI	GATC	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	173
BstFNI	CGCG	2 cut(s)	69, 139
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstUI	CGCG	2 cut(s)	69, 139
BstV1I	GCAGC	1 cut(s)	9
Bsu15I	ATCGAT	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	92
BsuTUI	ATCGAT	1 cut(s)	82
BtuMI	TCGCGA	1 cut(s)	69
BveI	ACCTGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	82
CsiI	ACCWGGT	1 cut(s)	171
Csp6I	GTAC	2 cut(s)	162, 196
CviJI	RGCY	4 cut(s)	22, 56, 92, 146
CviKI_1	RGCY	4 cut(s)	22, 56, 92, 146
CviQI	GTAC	2 cut(s)	162, 196
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	171
FaiI	YATR	5 cut(s)	111, 113, 129, 190, 192
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FaqI	GGGAC	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	23
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	68, 155
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	74
HpyCH4V	TGCA	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HspAI	GCGC	1 cut(s)	137
KpnI	GGTACC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	83
LpnPI	CCDG	4 cut(s)	60, 140, 158, 185
Lsp1109I	GCAGC	1 cut(s)	9
LweI	GCATC	3 cut(s)	59, 83, 92
MabI	ACCWGGT	1 cut(s)	171
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	20, 151, 172
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	69, 139
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	83
NlaIV	GGNNCC	1 cut(s)	163
NruI	TCGCGA	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	7
PspPPI	RGGWCCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	56
RruI	TCGCGA	1 cut(s)	69
RsaI	GTAC	2 cut(s)	163, 197
RsaNI	GTAC	2 cut(s)	162, 196
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	83
Sau96I	GGNCC	1 cut(s)	7
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	8 cut(s)	12, 24, 49, 58, 66, 123, 177, 183
SexAI	ACCWGGT	1 cut(s)	171
SfaNI	GCATC	3 cut(s)	59, 83, 92
SgeI	CNNG	7 cut(s)	59, 80, 150, 152, 167, 184, 185
SinI	GGWCC	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	171
TaqI	TCGA	2 cut(s)	82, 149
TatI	WGTACW	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseI	GCWGC	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.