Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0024670

Physical Location & Seq

Genomic Coordinates Forward (+)

70537816 .. 70557329

Gene Structure 19514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG499400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGAGTTCCAAACATGAAGTCACTGATCATCGGCTTGTTCTTCATTAGCTTGGTGATGTTGAACCAAGGTGTCGCAGCAGCCGGAAGACATTTTTCTCCGGGTAGAGTCATTAATCCATGCAGAAAAGCTGGAAGACCACTTCTCGGTTGTCATTTTCTCAAAAACAACGAGTTGCAAAAAAAAGGCTTCAGTACTCATAAGATGGATGACCTCAAAGCGCGGCTGTTTGCATCGAAAGTCCCAAAACCTGCATCTGCTATAAACCTTCGGAAATCATCTTATCAAACATCGGTCTTTGGAAGGCAACATTTTCAAGGTGTCGATGTTCTGGGGCTGAAGAAGCGGGGCCATGGCTTTTTTGTGGAGTACAGGATGAGAAAAGGAGGATGGCGATGGTGGAGCAGAGGCCAAACGACGTCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

142

Amino Acids

16.0

Weight (kDa)

11.25

Isoelectric Point (pI)

30.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024670)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g16850
rosa_samantha	Rh2AG487000 Rh2BG499400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	259
AccII	CGCG	1 cut(s)	223
AciI	CCGC	2 cut(s)	223, 346
AcuI	CTGAAG	2 cut(s)	175, 359
AcyI	GRCGYC	1 cut(s)	419
AfaI	GTAC	2 cut(s)	196, 371
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	64, 317
AluBI	AGCT	2 cut(s)	51, 131
AluI	AGCT	2 cut(s)	51, 131
AoxI	GGCC	2 cut(s)	349, 409
ApeKI	GCWGC	2 cut(s)	77, 80
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AseI	ATTAAT	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	67
BbsI	GAAGAC	2 cut(s)	94, 142
BbvI	GCAGC	2 cut(s)	89, 92
BccI	CCATC	3 cut(s)	199, 384, 390
BclI	TGATCA	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	3 cut(s)	78, 81, 224
BlsI	GCNGC	3 cut(s)	79, 82, 225
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	242, 263
BpiI	GAAGAC	2 cut(s)	94, 142
BpuMI	CCSGG	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	67, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	67, 352
BseGI	GGATG	3 cut(s)	214, 381, 395
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	89, 92
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	351, 411
BsiSI	CCGG	2 cut(s)	84, 101
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	351, 411
Bsp143I	GATC	1 cut(s)	27
Bsp19I	CCATGG	1 cut(s)	352
BspACI	CCGC	2 cut(s)	223, 346
BspANI	GGCC	2 cut(s)	351, 411
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	350
BspMI	ACCTGC	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	67, 352
BssMI	GATC	1 cut(s)	27
BssNI	GRCGYC	1 cut(s)	419
BssT1I	CCWWGG	2 cut(s)	67, 352
BstACI	GRCGYC	1 cut(s)	419
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	3 cut(s)	214, 381, 395
BstFNI	CGCG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	100
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	89, 92
BstV2I	GAAGAC	2 cut(s)	94, 142
BsuRI	GGCC	2 cut(s)	351, 411
BtgI	CCRYGG	1 cut(s)	352
BtgZI	GCGATG	1 cut(s)	409
BtsCI	GGATG	3 cut(s)	214, 381, 395
BtsIMutI	CAGTG	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	259
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	195, 370
CviAII	CATG	3 cut(s)	16, 120, 353
CviQI	GTAC	2 cut(s)	195, 370
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	67, 352
Eco57I	CTGAAG	2 cut(s)	175, 359
EcoT14I	CCWWGG	2 cut(s)	67, 352
ErhI	CCWWGG	2 cut(s)	67, 352
FaeI	CATG	3 cut(s)	19, 123, 356
FaiI	YATR	5 cut(s)	17, 121, 201, 263, 354
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	3 cut(s)	15, 119, 352
FauI	CCCGC	1 cut(s)	339
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	78, 81, 224
FokI	GGATG	3 cut(s)	221, 388, 402
Fsp4HI	GCNGC	3 cut(s)	78, 81, 224
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	3 cut(s)	78, 81, 224
HaeIII	GGCC	2 cut(s)	351, 411
HapII	CCGG	2 cut(s)	84, 101
HhaI	GCGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	3 cut(s)	19, 123, 356
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	2 cut(s)	84, 101
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	273, 424
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	278, 297
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	4 cut(s)	123, 178, 233, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpySE526I	ACGT	1 cut(s)	419
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	3 cut(s)	19, 123, 356
HspAI	GCGC	1 cut(s)	221
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	402
LpnPI	CCDG	6 cut(s)	97, 114, 117, 264, 317, 358
Lsp1109I	GCAGC	2 cut(s)	89, 92
LweI	GCATC	2 cut(s)	242, 263
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	4 cut(s)	34, 99, 147, 352
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	3 cut(s)	224, 380, 401
MseI	TTAA	1 cut(s)	114
MspI	CCGG	2 cut(s)	84, 101
MspR9I	CCNGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	343
NciI	CCSGG	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	352
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	3 cut(s)	19, 123, 356
NlaIV	GGNNCC	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	21
PkrI	GCNGC	3 cut(s)	79, 82, 225
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PshBI	ATTAAT	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	349
RsaI	GTAC	2 cut(s)	196, 371
RsaNI	GTAC	2 cut(s)	195, 370
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	3 cut(s)	78, 81, 224
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	349
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	8 cut(s)	53, 73, 133, 216, 253, 270, 322, 422
SfaNI	GCATC	2 cut(s)	242, 263
SsiI	CCGC	2 cut(s)	223, 346
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	2 cut(s)	67, 352
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	2 cut(s)	236, 324
TaqII	GACCGA	1 cut(s)	283
TatI	WGTACW	2 cut(s)	194, 369
TauI	GCSGC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	2 cut(s)	77, 80
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	32, 34
TspRI	CASTG	1 cut(s)	30
VspI	ATTAAT	1 cut(s)	114
ZraI	GACGTC	1 cut(s)	420
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.