Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029389

Physical Location & Seq

Genomic Coordinates Forward (+)

28107457 .. 28109312

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26980.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGACGAGAATGCCACTGCCATTATTGAGCTCTGCGCCCATGGAGGTCGTCTCCATGTTCTTCAGCTGGTGGGACGAGATCAACGAGTCCTCCCGGTGGCAGGACGGCATCTTCTACGCTCTCTGCGCCGCCTACGCCCTCGTCTCCTCCGTCGCTCTGTTTCAACTAATAAGGATTGAATTGAGAGTGCCGGAATATGGGTGGACGACACAGAAGGTTTTTCATCTTATGAACTTCATCGTTAACGGAGTACGAGCAGTTGTTTTCGGATTTCATGGTCAAGTGTTTAGTTTGCACCCGAAGGTACTAATATTGGTCTTGCTGGATCTTCCTGGACTGCTATTTTTCTCTACATACACGCTTCTTGTCCTCTTTTGGGCGGAGATATATCACCAGGCGAGAAGTTTACCAACAGATAAGCTGAGGATTGTTTATATATCGGTCAATGCTGTCATGTACTTTATACAGGTGTTTGCATCTGGGTATACCTCTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

166

Amino Acids

18.94

Weight (kDa)

6.9

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029389)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g26980
rosa_samantha	Rh5DG031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	485
AciI	CCGC	2 cut(s)	129, 380
AclWI	GGATC	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	46
AfaI	GTAC	3 cut(s)	252, 306, 458
AfiI	CCNNNNNNNGG	4 cut(s)	96, 100, 197, 376
AgsI	TTSAA	2 cut(s)	164, 179
AjnI	CCWGG	2 cut(s)	331, 393
AluBI	AGCT	3 cut(s)	30, 66, 421
AluI	AGCT	3 cut(s)	30, 66, 421
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	55, 148
AlwI	GGATC	1 cut(s)	333
AspLEI	GCGC	2 cut(s)	37, 128
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	422
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	2 cut(s)	333, 395
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	55, 148
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	3 cut(s)	94, 333, 395
BmrFI	CCNGG	3 cut(s)	94, 333, 395
BmsI	GCATC	2 cut(s)	117, 485
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
Bpu10I	CCTNAGC	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 100, 197, 376
BseBI	CCWGG	2 cut(s)	333, 395
BseDI	CCNNGG	1 cut(s)	39
BseLI	CCNNNNNNNGG	4 cut(s)	96, 100, 197, 376
BseMII	CTCAG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	94, 191
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	4 cut(s)	96, 100, 197, 376
BsmAI	GTCTC	2 cut(s)	55, 148
BsmBI	CGTCTC	2 cut(s)	55, 148
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	78, 325
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	2 cut(s)	129, 380
BspCNI	CTCAG	1 cut(s)	414
BspPI	GGATC	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	78, 325
BssNAI	GTATAC	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	39
Bst1107I	GTATAC	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	333, 395
BstDEI	CTNAG	1 cut(s)	422
BstDSI	CCRYGG	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	37, 128
BstKTI	GATC	2 cut(s)	81, 328
BstMAI	GTCTC	2 cut(s)	55, 148
BstMBI	GATC	2 cut(s)	78, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 134
BstNI	CCWGG	2 cut(s)	333, 395
BstSCI	CCNGG	3 cut(s)	92, 331, 393
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	486
BtgI	CCRYGG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
CfoI	GCGC	2 cut(s)	37, 128
Csp6I	GTAC	3 cut(s)	251, 305, 457
CviAII	CATG	4 cut(s)	40, 55, 275, 454
CviJI	RGCY	3 cut(s)	30, 66, 421
CviKI_1	RGCY	3 cut(s)	30, 66, 421
CviQI	GTAC	3 cut(s)	251, 305, 457
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	2 cut(s)	80, 327
DpnII	GATC	2 cut(s)	78, 325
EciI	GGCGGA	1 cut(s)	395
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	331, 393
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	2 cut(s)	55, 148
FaeI	CATG	4 cut(s)	43, 58, 278, 457
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	4 cut(s)	39, 54, 274, 453
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	1 cut(s)	129
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	129
GlaI	GCGC	2 cut(s)	36, 127
GluI	GCNGC	1 cut(s)	129
HapII	CCGG	2 cut(s)	94, 191
HhaI	GCGC	2 cut(s)	37, 128
Hin1II	CATG	4 cut(s)	43, 58, 278, 457
Hin6I	GCGC	2 cut(s)	35, 126
HinP1I	GCGC	2 cut(s)	35, 126
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	86
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	2 cut(s)	94, 191
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	4 cut(s)	204, 244, 407, 486
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	1 cut(s)	492
Hpy8I	GTNNAC	4 cut(s)	204, 244, 407, 486
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	208, 295
HpyCH4V	TGCA	2 cut(s)	295, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 134
HpyF3I	CTNAG	1 cut(s)	422
Hsp92II	CATG	4 cut(s)	43, 58, 278, 457
HspAI	GCGC	2 cut(s)	35, 126
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	78, 325
LweI	GCATC	2 cut(s)	117, 485
MalI	GATC	2 cut(s)	80, 327
MboI	GATC	2 cut(s)	78, 325
MboII	GAAGA	3 cut(s)	52, 103, 320
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	6 cut(s)	37, 100, 149, 157, 380, 417
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	2 cut(s)	94, 191
MspR9I	CCNGG	3 cut(s)	94, 333, 395
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	333, 395
MwoI	GCNNNNNNNGC	2 cut(s)	125, 134
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	78, 325
NlaIII	CATG	4 cut(s)	43, 58, 278, 457
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 147
PctI	GAATGC	1 cut(s)	15
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	331, 393
PspGI	CCWGG	2 cut(s)	331, 393
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	66
RsaI	GTAC	3 cut(s)	252, 306, 458
RsaNI	GTAC	3 cut(s)	251, 305, 457
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	78, 325
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	3 cut(s)	94, 333, 395
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	8 cut(s)	32, 48, 68, 219, 306, 423, 471, 491
SfaNI	GCATC	2 cut(s)	117, 485
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	2 cut(s)	129, 380
SspI	AATATT	1 cut(s)	312
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	92, 331, 393
StyI	CCWWGG	1 cut(s)	39
TaqII	GACCGA	1 cut(s)	430
TasI	AATT	1 cut(s)	179
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	21
TspDTI	ATGAA	4 cut(s)	212, 226, 245, 263
TspGWI	ACGGA	2 cut(s)	139, 261
TspRI	CASTG	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.