Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000110

Orthogroup ID

OG0024674

Physical Location & Seq

Genomic Coordinates Reverse (-)

21504 .. 21898

Gene Structure 395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom110g00020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCCATTTGGAATCGTTGCAATTTCTCACGGTTGCACTGGTGTGGCAGCACGTGCATGCGGCCTTGTAGGTCTAGACCCTACAAGAGTAAGTTCGTCGTCTTCTCTACTTGGTCTACTCAAAGATCGGCCTTCGTGGTTCCGAAACTGCCGATCTGTGGATGTGCTCAATGTAATGTCCACTGGCAATGGTGGAACCATTGAACTTCTTTACATGCAGGTATTCAATGAGCTCCTCTCTAATCTCCATTTCTATCAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010033 GO:0010065 GO:0010067 GO:0010072 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

88

Amino Acids

9.45

Weight (kDa)

7.75

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024674)

Species	Orthologous Gene IDs
pyrus_communis	pycom110g00020
rosa_multiflora	Rmu_co8365701.1_g000001
rosa_samantha	Rh7AG286400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	115
AciI	CCGC	1 cut(s)	60
AcvI	CACGTG	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	203, 226
AleI	CACNNNNGTG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	2 cut(s)	168, 234
AoxI	GGCC	2 cut(s)	61, 128
ApeKI	GCWGC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	234
BbrPI	CACGTG	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	168, 234
BbvI	GCAGC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	2 cut(s)	48, 61
BlsI	GCNGC	2 cut(s)	49, 62
BmiI	GGNNCC	2 cut(s)	140, 196
BpiI	GAAGAC	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BsaAI	YACGTR	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	43, 187
Bse3DI	GCAATG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	193
BseNI	ACTGG	2 cut(s)	43, 187
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	2 cut(s)	63, 130
BsiHKAI	GWGCWC	2 cut(s)	168, 234
BslI	CCNNNNNNNGG	1 cut(s)	157
BsnI	GGCC	2 cut(s)	63, 130
Bsp1286I	GDGCHC	2 cut(s)	168, 234
Bsp143I	GATC	2 cut(s)	124, 152
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	2 cut(s)	63, 130
BspLI	GGNNCC	2 cut(s)	140, 196
BspMI	ACCTGC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	43, 187
BssMI	GATC	2 cut(s)	124, 152
Bst4CI	ACNGT	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	127, 155
BstMBI	GATC	2 cut(s)	124, 152
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	2 cut(s)	60, 217
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	63, 130
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	36, 180
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	58
CviAII	CATG	2 cut(s)	57, 214
CviJI	RGCY	3 cut(s)	63, 130, 232
CviKI_1	RGCY	3 cut(s)	63, 130, 232
DpnI	GATC	2 cut(s)	126, 154
DpnII	GATC	2 cut(s)	124, 152
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	232
Eco72I	CACGTG	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	2 cut(s)	60, 217
FaiI	YATR	2 cut(s)	58, 215
FatI	CATG	2 cut(s)	56, 213
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	48, 61
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	48, 61
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	2 cut(s)	48, 61
HaeIII	GGCC	2 cut(s)	63, 130
Hin1II	CATG	2 cut(s)	60, 217
HinfI	GANTC	1 cut(s)	12
Hpy166II	GTNNAC	2 cut(s)	116, 180
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	2 cut(s)	116, 180
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	20, 36, 56, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	60, 217
Kzo9I	GATC	2 cut(s)	124, 152
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	3 cut(s)	24, 168, 203
Lsp1109I	GCAGC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	52
MalI	GATC	2 cut(s)	126, 154
MboI	GATC	2 cut(s)	124, 152
MboII	GAAGA	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	168, 234
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	1 cut(s)	245
MseI	TTAA	1 cut(s)	262
MslI	CAYNNNNRTG	2 cut(s)	41, 55
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	2 cut(s)	124, 152
NlaIII	CATG	2 cut(s)	60, 217
NlaIV	GGNNCC	2 cut(s)	140, 196
NspI	RCATGY	2 cut(s)	60, 217
OliI	CACNNNNGTG	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	49, 62
PmaCI	CACGTG	1 cut(s)	53
PmlI	CACGTG	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	234
PspCI	CACGTG	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	140, 196
RseI	CAYNNNNRTG	2 cut(s)	41, 55
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	262
SatI	GCNGC	2 cut(s)	48, 61
Sau3AI	GATC	2 cut(s)	124, 152
SduI	GDGCHC	2 cut(s)	168, 234
SetI	ASST	4 cut(s)	55, 73, 222, 234
SmiMI	CAYNNNNRTG	2 cut(s)	41, 55
SphI	GCATGC	1 cut(s)	60
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	60
SspI	AATATT	1 cut(s)	260
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	1 cut(s)	55
TasI	AATT	1 cut(s)	21
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TscAI	CASTG	2 cut(s)	43, 187
TseI	GCWGC	1 cut(s)	47
TspRI	CASTG	2 cut(s)	43, 187
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	2 cut(s)	60, 217
XmiI	GTMKAC	1 cut(s)	115
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.