Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8365701.1

Orthogroup ID

OG0024674

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1051

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8365701.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgtgtttctgggctctggttgttgattgttctatgtgtttttgtgctagacttttgtccattgcagaggagactttagcagagtttctttcaaaggccactggaactgctgtggagtgggtccaattgcctggtatgaagcctggtccggattccattggaatcgttgctatttctcacggttgcaccggtgtggcagcacgtgcttgcggcctggtgggtctagaacctacaagggtctctgaaatccttaaagatcgaccctcgtggttccgtaactgtcgatctgtggatgtgctaaacgtgttgtccactggaaatggtggaaccattgaactgctttacatgcagctctatgcacccacaactttggcaccagctcgcgacttctggttgctgcgctatacatctgttttggaagatggtagtcttgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010033 GO:0010065 GO:0010067 GO:0010072 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

145

Amino Acids

15.7

Weight (kDa)

5.06

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024674)

Species	Orthologous Gene IDs
pyrus_communis	pycom110g00020
rosa_multiflora	Rmu_co8365701.1_g000001
rosa_samantha	Rh7AG286400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	373
AccII	CGCG	1 cut(s)	384
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	1 cut(s)	210
AcvI	CACGTG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	303
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	93, 335
AjnI	CCWGG	3 cut(s)	130, 142, 213
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	2 cut(s)	352, 380
AluI	AGCT	2 cut(s)	352, 380
Alw26I	GTCTC	2 cut(s)	65, 244
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	2 cut(s)	96, 211
ApeKI	GCWGC	3 cut(s)	197, 349, 397
AsiGI	ACCGGT	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	121, 146
AvaII	GGWCC	2 cut(s)	121, 146
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	16
BauI	CACGAG	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	209, 361, 384
BccI	CCATC	1 cut(s)	416
BciT130I	CCWGG	3 cut(s)	132, 144, 215
BcoDI	GTCTC	2 cut(s)	65, 244
BfaI	CTAG	2 cut(s)	48, 224
BisI	GCNGC	4 cut(s)	198, 211, 350, 398
BlsI	GCNGC	4 cut(s)	199, 212, 351, 399
Bme1390I	CCNGG	3 cut(s)	132, 144, 215
Bme18I	GGWCC	2 cut(s)	121, 146
BmgT120I	GGNCC	2 cut(s)	121, 146
BmiI	GGNNCC	4 cut(s)	122, 272, 328, 375
BmrFI	CCNGG	3 cut(s)	132, 144, 215
BoxI	GACNNNNGTC	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	244
BsaWI	WCCGGW	2 cut(s)	148, 188
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	106, 319
Bse3DI	GCAATG	1 cut(s)	60
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	3 cut(s)	132, 144, 215
BseGI	GGATG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	106, 319
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	3 cut(s)	209, 361, 384
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	98, 213
BshNI	GGYRCC	1 cut(s)	373
BshTI	ACCGGT	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	149, 189
BsmAI	GTCTC	2 cut(s)	65, 244
BsnI	GGCC	2 cut(s)	98, 213
Bso31I	GGTCTC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	256, 284
Bsp68I	TCGCGA	1 cut(s)	384
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	2 cut(s)	98, 213
BspEI	TCCGGA	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	4 cut(s)	122, 272, 328, 375
BspT107I	GGYRCC	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	106, 319
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	2 cut(s)	256, 284
BssSI	CACGAG	1 cut(s)	265
Bst2BI	CACGAG	1 cut(s)	265
Bst2UI	CCWGG	3 cut(s)	132, 144, 215
Bst4CI	ACNGT	2 cut(s)	182, 281
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	208, 382
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	2 cut(s)	259, 287
BstMAI	GTCTC	2 cut(s)	65, 244
BstMBI	GATC	2 cut(s)	256, 284
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 346
BstNI	CCWGG	3 cut(s)	132, 144, 215
BstNSI	RCATGY	1 cut(s)	349
BstPAI	GACNNNNGTC	1 cut(s)	55
BstSCI	CCNGG	3 cut(s)	130, 142, 213
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	3 cut(s)	209, 361, 384
BstXI	CCANNNNNNTGG	2 cut(s)	131, 370
BsuRI	GGCC	2 cut(s)	98, 213
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	99, 312
BtuMI	TCGCGA	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	208, 382
CfoI	GCGC	1 cut(s)	402
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	121, 146
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	6 cut(s)	14, 98, 142, 213, 352, 380
CviKI_1	RGCY	6 cut(s)	14, 98, 142, 213, 352, 380
DpnI	GATC	2 cut(s)	258, 286
DpnII	GATC	2 cut(s)	256, 284
Eco24I	GRGCYC	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	121, 146
Eco72I	CACGTG	1 cut(s)	203
EcoRII	CCWGG	3 cut(s)	130, 142, 213
EcoT38I	GRGCYC	1 cut(s)	16
FaeI	CATG	1 cut(s)	349
FaiI	YATR	5 cut(s)	35, 137, 347, 357, 405
FatI	CATG	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	198, 211, 350, 398
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	4 cut(s)	198, 211, 350, 398
FspBI	CTAG	2 cut(s)	48, 224
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	4 cut(s)	198, 211, 350, 398
HaeIII	GGCC	2 cut(s)	98, 213
HapII	CCGG	2 cut(s)	149, 189
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	152, 162
HpaII	CCGG	2 cut(s)	149, 189
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	3 cut(s)	149, 224, 383
Hpy8I	GTNNAC	1 cut(s)	312
HpyCH4III	ACNGT	2 cut(s)	182, 281
HpyCH4IV	ACGT	2 cut(s)	202, 303
HpyCH4V	TGCA	4 cut(s)	65, 186, 349, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 346
HpySE526I	ACGT	2 cut(s)	202, 303
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	400
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	256, 284
Lsp1109I	GCAGC	3 cut(s)	209, 361, 384
MaeI	CTAG	2 cut(s)	48, 224
MaeII	ACGT	2 cut(s)	202, 303
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	2 cut(s)	258, 286
MboI	GATC	2 cut(s)	256, 284
MboII	GAAGA	1 cut(s)	431
MfeI	CAATTG	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	1 cut(s)	125
MnlI	CCTC	2 cut(s)	61, 274
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	2 cut(s)	149, 189
MspR9I	CCNGG	3 cut(s)	132, 144, 215
MunI	CAATTG	1 cut(s)	125
MvaI	CCWGG	3 cut(s)	132, 144, 215
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	203, 346
NdeII	GATC	2 cut(s)	256, 284
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	4 cut(s)	122, 272, 328, 375
NruI	TCGCGA	1 cut(s)	384
NspI	RCATGY	1 cut(s)	349
OliI	CACNNNNGTG	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	152, 162
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	199, 212, 351, 399
PmaCI	CACGTG	1 cut(s)	203
PmlI	CACGTG	1 cut(s)	203
Ppu21I	YACGTR	1 cut(s)	203
PshAI	GACNNNNGTC	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	130, 142, 213
PspCI	CACGTG	1 cut(s)	203
PspGI	CCWGG	3 cut(s)	130, 142, 213
PspN4I	GGNNCC	4 cut(s)	122, 272, 328, 375
PspPI	GGNCC	2 cut(s)	121, 146
RruI	TCGCGA	1 cut(s)	384
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	4 cut(s)	198, 211, 350, 398
Sau3AI	GATC	2 cut(s)	256, 284
Sau96I	GGNCC	2 cut(s)	121, 146
ScrFI	CCNGG	3 cut(s)	132, 144, 215
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	5 cut(s)	205, 232, 306, 354, 382
SgrAI	CRCCGGYG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	121, 146
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	2 cut(s)	48, 224
StyD4I	CCNGG	3 cut(s)	130, 142, 213
TaaI	ACNGT	2 cut(s)	182, 281
TaiI	ACGT	2 cut(s)	205, 306
TaqI	TCGA	2 cut(s)	259, 283
TasI	AATT	1 cut(s)	125
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	152, 162
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	2 cut(s)	106, 319
TseI	GCWGC	3 cut(s)	197, 349, 397
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	106, 319
VpaK11BI	GGWCC	2 cut(s)	121, 146
XbaI	TCTAGA	1 cut(s)	223
XceI	RCATGY	1 cut(s)	349
XspI	CTAG	2 cut(s)	48, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.