pycom111g01840

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Forward (+)
1116980 .. 1117306
327 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGCATATTGTTTATGCAGGATTTTTGGATAAGGCAAACATCTGCTGTGGATATCATGAACACGACGACCATGTGTGGTGTGGTAATAAGGGCATCATAAGCAATGGGACTCAAGTATATGCTGGTTCATGTGAAGATCCTTCCTTGTATATTAGCTGGGACGGTGTACACTACACCGAGGCTGCAAACCGTTGGATTGCTGATCAAATCGTCGGCGGTTCCTTCTCAGACGTGCCGGTTCCAATCACAGATTCATGTCATAGGATTCGATCCGAGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.2

Weight (kDa)

5.1

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022310)

Species Orthologous Gene IDs
malus_domestica MD09G1022000.v1.1 MD13G1099000.v1.1 MD16G1099700.v1.1
pyrus_communis pycom111g01840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 216
AclWI GGATC 2 cut(s) 131, 264
AfaI GTAC 1 cut(s) 168
AjiI CACGTC 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
AlwI GGATC 2 cut(s) 131, 264
ApeKI GCWGC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 169
BclI TGATCA 1 cut(s) 202
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmgBI CACGTC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 220, 240
BmsI GCATC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 177
Bse118I RCCGGY 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 2 cut(s) 121, 173
BsmFI GGGAC 2 cut(s) 121, 173
Bsp1407I TGTACA 1 cut(s) 166
Bsp143I GATC 3 cut(s) 136, 202, 269
BspACI CCGC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 239
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 2 cut(s) 220, 240
BspPI GGATC 2 cut(s) 131, 264
BsrDI GCAATG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 235
BsrGI TGTACA 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 3 cut(s) 136, 202, 269
Bst4CI ACNGT 2 cut(s) 164, 191
BstAUI TGTACA 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 226
BstKTI GATC 3 cut(s) 139, 205, 272
BstMBI GATC 3 cut(s) 136, 202, 269
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BtrI CACGTC 1 cut(s) 232
CciI TCATGA 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 235
Csp6I GTAC 1 cut(s) 167
CviAII CATG 4 cut(s) 56, 71, 129, 255
CviJI RGCY 2 cut(s) 156, 182
CviKI_1 RGCY 2 cut(s) 156, 182
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 1 cut(s) 226
DpnI GATC 3 cut(s) 138, 204, 271
DpnII GATC 3 cut(s) 136, 202, 269
Eco32I GATATC 1 cut(s) 53
EcoRV GATATC 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 59, 74, 132, 258
FaqI GGGAC 2 cut(s) 121, 173
FatI CATG 4 cut(s) 55, 70, 128, 254
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 160
HapII CCGG 1 cut(s) 236
Hin1II CATG 4 cut(s) 59, 74, 132, 258
HinfI GANTC 3 cut(s) 109, 251, 265
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 167, 169
Hpy188I TCNGA 2 cut(s) 229, 274
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 2 cut(s) 167, 169
Hpy99I CGWCG 2 cut(s) 68, 215
HpyAV CCTTC 2 cut(s) 150, 232
HpyCH4III ACNGT 2 cut(s) 164, 191
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 4, 17, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 4 cut(s) 59, 74, 132, 258
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 136, 202, 269
LpnPI CCDG 4 cut(s) 3, 108, 142, 249
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 102
MaeII ACGT 1 cut(s) 231
MalI GATC 3 cut(s) 138, 204, 271
MboI GATC 3 cut(s) 136, 202, 269
MboII GAAGA 1 cut(s) 146
MflI RGATCY 1 cut(s) 136
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 1 cut(s) 172
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 3 cut(s) 136, 202, 269
NlaIII CATG 4 cut(s) 59, 74, 132, 258
NlaIV GGNNCC 2 cut(s) 220, 240
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 55
PfeI GAWTC 2 cut(s) 251, 265
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 220, 240
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 3 cut(s) 136, 202, 269
SchI GAGTC 1 cut(s) 103
SetI ASST 2 cut(s) 158, 234
SfaNI GCATC 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
SsiI CCGC 1 cut(s) 216
TaaI ACNGT 2 cut(s) 164, 191
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 268
TatI WGTACW 1 cut(s) 166
TfiI GAWTC 2 cut(s) 251, 265
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 72, 117, 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.