Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0029392

Physical Location & Seq

Genomic Coordinates Reverse (-)

1715234 .. 1715605

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAATAGAATAATCCCCACGCCGGCCGCTAAATTCCGCCCCCTCTACACCGACCCTAACTCCGCCGACGTCTCCACCTCCGCCGTGCCCGACGAACAGAACCCGCTCACAATCCTATGGAACCACCAAATCCTCGACCCCGACAGCGATATCGTAGCGCATTGGAACCACATCTTCCTCGTCATCTGCATTCTGGCCCTCTTCGTCGACCCTCTCTATTTCTACCTCCCTTGGGTCGGCGACACAGCTTGCTTGACCACCGACAACCAGCTCGCCGTCGTCGTCACCTGCTTCCGCACGCTCACCGACCTCTTCTACCTCCTCCACATGATCGATCAAGTTCCGCACGGCCTATGTCAATCCCAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016324 GO:0019725 GO:0022414 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0046873 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051704 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0098590 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

124

Amino Acids

13.98

Weight (kDa)

4.73

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029392)

Species	Orthologous Gene IDs
pyrus_communis	pycom111g02860
rosa_samantha	Rh2AG625100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
AatII	GACGTC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	7 cut(s)	27, 37, 63, 81, 104, 295, 344
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	69
AfiI	CCNNNNNNNGG	3 cut(s)	22, 232, 236
AluBI	AGCT	2 cut(s)	248, 271
AluI	AGCT	2 cut(s)	248, 271
Alw26I	GTCTC	1 cut(s)	76
AoxI	GGCC	3 cut(s)	24, 195, 349
ApoI	RAATTY	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	277, 295
BaeGI	GKGCMC	1 cut(s)	90
BceAI	ACGGC	3 cut(s)	68, 260, 364
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	122, 167
Bsa29I	ATCGAT	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 232, 236
Bse118I	RCCGGY	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	230
BseLI	CCNNNNNNNGG	3 cut(s)	22, 232, 236
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	24
BseYI	CCCAGC	1 cut(s)	363
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	26, 197, 351
BshVI	ATCGAT	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	3 cut(s)	22, 232, 236
BsmAI	GTCTC	1 cut(s)	76
BsmBI	CGTCTC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	26, 197, 351
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	330, 334
BspACI	CCGC	7 cut(s)	27, 37, 63, 81, 104, 295, 344
BspANI	GGCC	3 cut(s)	26, 197, 351
BspDI	ATCGAT	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	122, 167
BspMI	ACCTGC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	2 cut(s)	330, 334
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	206, 317
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	4 cut(s)	24, 250, 273, 299
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	333, 337
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	330, 334
BstMCI	CGRYCG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	90
BstZI	CGGCCG	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	333
BsuRI	GGCC	3 cut(s)	26, 197, 351
BsuTUI	ATCGAT	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	4 cut(s)	24, 250, 273, 299
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	196
ClaI	ATCGAT	1 cut(s)	333
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	5 cut(s)	26, 197, 248, 271, 351
CviKI_1	RGCY	5 cut(s)	26, 197, 248, 271, 351
DpnI	GATC	2 cut(s)	332, 336
DpnII	GATC	2 cut(s)	330, 334
EaeI	YGGCCR	1 cut(s)	24
EagI	CGGCCG	1 cut(s)	24
Eam1104I	CTCTTC	2 cut(s)	206, 317
EarI	CTCTTC	2 cut(s)	206, 317
EciI	GGCGGA	3 cut(s)	26, 52, 70
EclXI	CGGCCG	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	151
Eco52I	CGGCCG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	1 cut(s)	331
FaiI	YATR	3 cut(s)	118, 329, 355
FatI	CATG	1 cut(s)	327
FauI	CCCGC	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	370
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	27
GsaI	CCCAGC	1 cut(s)	367
HaeIII	GGCC	3 cut(s)	26, 197, 351
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	277, 295
Hpy166II	GTNNAC	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	5 cut(s)	71, 95, 209, 281, 284
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	330, 334
LpnPI	CCDG	4 cut(s)	36, 179, 281, 301
MaeI	CTAG	1 cut(s)	370
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	332, 336
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	2 cut(s)	330, 334
MboII	GAAGA	3 cut(s)	166, 193, 304
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	1 cut(s)	32
MroNI	GCCGGC	1 cut(s)	22
MspI	CCGG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	189
NaeI	GCCGGC	1 cut(s)	24
NdeII	GATC	2 cut(s)	330, 334
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	2 cut(s)	122, 167
NmuCI	GTSAC	1 cut(s)	283
PaqCI	CACCTGC	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	1 cut(s)	189
PdiI	GCCGGC	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	122, 167
PspPI	GGNCC	1 cut(s)	196
SalI	GTCGAC	1 cut(s)	206
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	330, 334
Sau96I	GGNCC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	8 cut(s)	72, 80, 228, 250, 273, 290, 312, 321
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	7 cut(s)	27, 37, 63, 81, 104, 295, 344
SspMI	CTAG	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	230
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	3 cut(s)	135, 207, 333
TasI	AATT	1 cut(s)	32
TauI	GCSGC	1 cut(s)	29
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	370
ZraI	GACGTC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.