Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0029392

Physical Location & Seq

Genomic Coordinates Forward (+)

84831010 .. 84831516

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG625100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGTAGATCCATCACCACGCCGGTCAAATTCTGCCCTCTCCAGAACCCTAGCGGCGACGGCTCCACCTCGGCCGCCGTAGTAGACGAGCACTCGCTCCACATTCTATGGCGCCACAAGATTCTCGACCCCGACTCGGACCTGGTATCCCTCTGGCACCACATCTTCCTCGTCATCTGCATCGCTGCGCTCTTCATCGACCCTCTCTACTTCTACCTCCCCTTCGTCGGCGGCGAGGGCTGCCTCTCCACCGACCACCGCCTCGCCGTCATCGTCACCTTCTTCCGCTCCATCGCCGACCTCTTCTACCTGTTGCACATGATCGTCAAGTTCCGCACCGCATTCATCGCCCCCAGCTCTAGGGTTTTCGGCCGCGGCGATCTCGTCATGGACGGCAGACAGATCGCCATGCGGTATCTCAAGTCCGACTTCGTGGTCGATCTGGCTGCCACTCTTCCAATTCCGCAGGCACGAATTCATTACTTGATACATTTTTTTTTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016324 GO:0019725 GO:0022414 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0046873 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051704 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0098590 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

168

Amino Acids

19.13

Weight (kDa)

7.12

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029392)

Species	Orthologous Gene IDs
pyrus_communis	pycom111g02860
rosa_samantha	Rh2AG625100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
AccB1I	GGYRCC	2 cut(s)	111, 156
AccBSI	CCGCTC	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	375
AclWI	GGATC	1 cut(s)	3
AcoI	YGGCCR	2 cut(s)	72, 370
AcsI	RAATTY	2 cut(s)	29, 474
AcyI	GRCGYC	1 cut(s)	112
AfiI	CCNNNNNNNGG	3 cut(s)	136, 227, 360
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	1 cut(s)	357
AluI	AGCT	1 cut(s)	357
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	3
AoxI	GGCC	2 cut(s)	72, 370
ApeKI	GCWGC	3 cut(s)	185, 240, 446
ApoI	RAATTY	2 cut(s)	29, 474
AspLEI	GCGC	2 cut(s)	114, 190
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	7, 268
AvaII	GGWCC	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	111, 156
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	172, 227, 433
BccI	CCATC	2 cut(s)	20, 299
BceAI	ACGGC	4 cut(s)	62, 76, 251, 409
BcgI	CGANNNNNNTGC	4 cut(s)	385, 419, 428, 462
BciT130I	CCWGG	1 cut(s)	143
BciVI	GTATCC	1 cut(s)	157
BfaI	CTAG	2 cut(s)	51, 360
BfoI	RGCGCY	1 cut(s)	115
BfuI	GTATCC	1 cut(s)	157
BisI	GCNGC	8 cut(s)	55, 75, 186, 232, 241, 373, 376, 447
BlsI	GCNGC	8 cut(s)	56, 76, 187, 233, 242, 374, 377, 448
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	64, 113, 158
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	69, 373
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 227, 360
Bse118I	RCCGGY	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	69, 373
BseLI	CCNNNNNNNGG	3 cut(s)	136, 227, 360
BseX3I	CGGCCG	2 cut(s)	72, 370
BseXI	GCAGC	3 cut(s)	172, 227, 433
BseYI	CCCAGC	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	375
Bsh1285I	CGRYCG	2 cut(s)	75, 373
BshFI	GGCC	2 cut(s)	74, 372
BshNI	GGYRCC	2 cut(s)	111, 156
BsiEI	CGRYCG	2 cut(s)	75, 373
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	3 cut(s)	136, 227, 360
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	74, 372
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	5 cut(s)	8, 321, 379, 402, 439
BspANI	GGCC	2 cut(s)	74, 372
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	64, 113, 158
BspPI	GGATC	1 cut(s)	3
BspQI	GCTCTTC	1 cut(s)	197
BspT107I	GGYRCC	2 cut(s)	111, 156
BsrBI	CCGCTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	69, 373
BssMI	GATC	5 cut(s)	8, 321, 379, 402, 439
BssNI	GRCGYC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	143
Bst6I	CTCTTC	3 cut(s)	197, 308, 459
BstACI	GRCGYC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	468
BstDSI	CCRYGG	1 cut(s)	373
BstFNI	CGCG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	2 cut(s)	114, 190
BstKTI	GATC	5 cut(s)	11, 324, 382, 405, 442
BstMBI	GATC	5 cut(s)	8, 321, 379, 402, 439
BstMCI	CGRYCG	2 cut(s)	75, 373
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 237, 240, 347
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	3 cut(s)	172, 227, 433
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BstZI	CGGCCG	2 cut(s)	72, 370
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	74, 372
BtgI	CCRYGG	1 cut(s)	373
BtgZI	GCGATG	3 cut(s)	166, 277, 331
Cac8I	GCNNGC	1 cut(s)	468
CfoI	GCGC	2 cut(s)	114, 190
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	139
Cfr42I	CCGCGG	1 cut(s)	376
CsiI	ACCWGGT	1 cut(s)	141
CviAII	CATG	3 cut(s)	319, 388, 409
CviJI	RGCY	6 cut(s)	63, 74, 240, 357, 372, 446
CviKI_1	RGCY	6 cut(s)	63, 74, 240, 357, 372, 446
DinI	GGCGCC	1 cut(s)	113
DpnI	GATC	5 cut(s)	10, 323, 381, 404, 441
DpnII	GATC	5 cut(s)	8, 321, 379, 402, 439
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	2 cut(s)	72, 370
EagI	CGGCCG	2 cut(s)	72, 370
Eam1104I	CTCTTC	3 cut(s)	197, 308, 459
EarI	CTCTTC	3 cut(s)	197, 308, 459
EclXI	CGGCCG	2 cut(s)	72, 370
Eco47I	GGWCC	1 cut(s)	139
Eco52I	CGGCCG	2 cut(s)	72, 370
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
FaeI	CATG	3 cut(s)	322, 391, 412
FaiI	YATR	4 cut(s)	109, 320, 389, 410
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	3 cut(s)	318, 387, 408
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	8 cut(s)	55, 75, 186, 232, 241, 373, 376, 447
Fsp4HI	GCNGC	8 cut(s)	55, 75, 186, 232, 241, 373, 376, 447
FspBI	CTAG	2 cut(s)	51, 360
GlaI	GCGC	2 cut(s)	113, 189
GluI	GCNGC	8 cut(s)	55, 75, 186, 232, 241, 373, 376, 447
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	74, 372
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	2 cut(s)	114, 190
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	3 cut(s)	322, 391, 412
Hin6I	GCGC	2 cut(s)	112, 188
HinP1I	GCGC	2 cut(s)	112, 188
HinfI	GANTC	2 cut(s)	121, 134
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	7, 268
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	139, 427
Hpy188III	TCNNGA	2 cut(s)	43, 125
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	2 cut(s)	62, 230
HpyAV	CCTTC	2 cut(s)	232, 289
HpyCH4V	TGCA	2 cut(s)	180, 316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 237, 240, 347
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	3 cut(s)	322, 391, 412
HspAI	GCGC	2 cut(s)	112, 188
KasI	GGCGCC	1 cut(s)	111
KspI	CCGCGG	1 cut(s)	376
Kzo9I	GATC	5 cut(s)	8, 321, 379, 402, 439
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	3 cut(s)	68, 102, 293
LpnPI	CCDG	9 cut(s)	36, 56, 128, 139, 155, 323, 367, 428, 452
Lsp1109I	GCAGC	3 cut(s)	172, 227, 433
LweI	GCATC	1 cut(s)	189
MabI	ACCWGGT	1 cut(s)	141
MaeI	CTAG	2 cut(s)	51, 360
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	5 cut(s)	10, 323, 381, 404, 441
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	5 cut(s)	8, 321, 379, 402, 439
MboII	GAAGA	5 cut(s)	157, 184, 274, 295, 446
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	3 cut(s)	29, 459, 474
Mly113I	GGCGCC	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	4 cut(s)	60, 237, 240, 347
NarI	GGCGCC	1 cut(s)	112
NdeII	GATC	5 cut(s)	8, 321, 379, 402, 439
NlaIII	CATG	3 cut(s)	322, 391, 412
NlaIV	GGNNCC	3 cut(s)	64, 113, 158
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	3 cut(s)	231, 270, 375
PctI	GAATGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	8 cut(s)	56, 76, 187, 233, 242, 374, 377, 448
PleI	GAGTC	1 cut(s)	128
PluTI	GGCGCC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	64, 113, 158
PspPI	GGNCC	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	8
SacII	CCGCGG	1 cut(s)	376
SapI	GCTCTTC	1 cut(s)	197
SatI	GCNGC	8 cut(s)	55, 75, 186, 232, 241, 373, 376, 447
Sau3AI	GATC	5 cut(s)	8, 321, 379, 402, 439
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	7 cut(s)	71, 144, 219, 281, 303, 312, 359
SexAI	ACCWGGT	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	189
SfoI	GGCGCC	1 cut(s)	113
Sfr303I	CCGCGG	1 cut(s)	376
SgrBI	CCGCGG	1 cut(s)	376
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	3 cut(s)	29, 459, 474
SspDI	GGCGCC	1 cut(s)	111
SspMI	CTAG	2 cut(s)	51, 360
StyD4I	CCNGG	1 cut(s)	141
TaqI	TCGA	3 cut(s)	126, 198, 438
TasI	AATT	3 cut(s)	29, 459, 474
TauI	GCSGC	5 cut(s)	57, 77, 234, 375, 378
TfiI	GAWTC	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	3 cut(s)	185, 240, 446
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	3 cut(s)	184, 334, 467
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	2 cut(s)	29, 474
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	2 cut(s)	51, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.