Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0014469

Physical Location & Seq

Genomic Coordinates Forward (+)

2761862 .. 2763682

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04530.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTTATTGCCCTTTTGCCTTGTTGCAGGAGAAACACGCGACGAGTTTTGAATACGGGTGGTATGGAAATCCAACGACAGTAGTTGTTGAGGGGAAGATCAGTGCGCTTAAGGGAGCGGAATCGACAATGATATTGGCATCTGGAATGTGTGCTAGCACTGTCTTGTTGATGGCATTGGTTCCAGCTGGTGGGCACATCGTGACCACCACGGATTGCTATAGGAACACTAGGATTTTCATTGAGACCATTCTTCCAAAAATGGGGATCGATCAAGGTAAATTATCCTGTTCTCATAAACATGTGCCCACAATCGTTGACCCTGCTGATGTGGGAGCCCTGGAAACTGCATTGGATGAGCACAAAGTCAGTGGGAAAAAAGTGTGTCTCTTTTCTTCAGAGTCTCCTACTGATCCATTCCTCAGGTGCATTGACATTAAGTTGGTTTCAGAGCTCTTTCTGTATAGATGGCAATTTTGCCACACTTACTCAGGCTACCAGTGTGCGATTATTGTTGGAAAGATTATAGTACAAAAGTTTATGCTGGGATTCACCACTTTGTATTTGAAAACTGATGTTATTGAAAATGTTTATCGGCAGGTGGCACACGCCTACTATCCTGGTTTGCCTAGCCATCCTGAACATCAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAATTTTGAGATTGATGGAGACTTGATGAGAACCATTAAATTCGTGGATGCACTGAAAATCCCATGTATTGCTCCATCCTTTGGTGGCTGTGAGACCATTGTGGATCAGCCATTGTCATGCTATGTGGTTGATGTTGAGAATCAATGTCAACCCAAAACAATAAGTAATCCACAACACAATCTAAAGCCCAAGTCCATATCTAGTTTGATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0001887 GO:0003674 GO:0003824 GO:0003962 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko00920 ko01100 ko01110 ko01130 ko01230 map00270 map00450 map00920 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Cys_Met_Meta_PP

Protein Analysis

301

Amino Acids

33.16

Weight (kDa)

6.78

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01120
fragaria_vesca	FvH4_6g48090
malus_domestica	MD09G1054200.v1.1 MD17G1051900.v1.1
prunus_persica	Prupe.3G264300_v2.0.a1
pyrus_communis	pycom111g04530 pycom111g04550 pycom17g04900
rosa_chinensis	RchiOBHm_Chr2g0167411
rosa_laevigata	RLG00000021715
rosa_multiflora	Rmu_sc0001840.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083530
rosa_rugosa	Rorug02G0530200
rosa_samantha	Rh2AG597200 Rh2CG579400 Rh2DG619800
rosa_wichuraiana	Rw2G049700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	589
Acc36I	ACCTGC	1 cut(s)	589
AccB7I	CCANNNNNTGG	2 cut(s)	191, 767
AccBSI	CCGCTC	1 cut(s)	119
AccII	CGCG	1 cut(s)	41
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	3 cut(s)	275, 407, 798
AcsI	RAATTY	1 cut(s)	725
AcuI	CTGAAG	1 cut(s)	381
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	3 cut(s)	191, 263, 767
AflII	CTTAAG	1 cut(s)	110
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	3 cut(s)	53, 568, 584
AjnI	CCWGG	2 cut(s)	339, 619
AluBI	AGCT	3 cut(s)	188, 454, 649
AluI	AGCT	3 cut(s)	188, 454, 649
Alw21I	GWGCWC	2 cut(s)	363, 456
Alw26I	GTCTC	5 cut(s)	239, 392, 408, 699, 773
AlwI	GGATC	3 cut(s)	275, 407, 798
ApoI	RAATTY	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	544
AsuNHI	GCTAGC	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	422
BaeGI	GKGCMC	2 cut(s)	198, 309
BanII	GRGCYC	2 cut(s)	340, 456
Bbv12I	GWGCWC	2 cut(s)	363, 456
BccI	CCATC	5 cut(s)	166, 462, 642, 695, 769
BciT130I	CCWGG	2 cut(s)	341, 621
BcoDI	GTCTC	5 cut(s)	239, 392, 408, 699, 773
BfaI	CTAG	4 cut(s)	156, 231, 630, 888
BfmI	CTRYAG	1 cut(s)	220
BfrI	CTTAAG	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	589
Bme1390I	CCNGG	2 cut(s)	341, 621
BmiI	GGNNCC	2 cut(s)	183, 337
BmrFI	CCNGG	2 cut(s)	341, 621
BmsI	GCATC	2 cut(s)	149, 724
BmtI	GCTAGC	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	270
BsaI	GGTCTC	2 cut(s)	239, 773
BsaJI	CCNNGG	2 cut(s)	210, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 263, 767
Bse1I	ACTGG	2 cut(s)	499, 673
Bse21I	CCTNAGG	1 cut(s)	422
BseBI	CCWGG	2 cut(s)	341, 621
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	210, 339
BseGI	GGATG	4 cut(s)	361, 634, 739, 761
BseLI	CCNNNNNNNGG	3 cut(s)	191, 263, 767
BseMII	CTCAG	2 cut(s)	436, 504
BseNI	ACTGG	2 cut(s)	499, 673
BseSI	GKGCMC	2 cut(s)	198, 309
BseYI	CCCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	41
BshVI	ATCGAT	1 cut(s)	270
BsiHKAI	GWGCWC	2 cut(s)	363, 456
BslI	CCNNNNNNNGG	3 cut(s)	191, 263, 767
BsmAI	GTCTC	5 cut(s)	239, 392, 408, 699, 773
Bso31I	GGTCTC	2 cut(s)	239, 773
Bsp1286I	GDGCHC	5 cut(s)	198, 309, 340, 363, 456
Bsp143I	GATC	5 cut(s)	99, 267, 271, 412, 790
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	435, 503
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	183, 337
BspMI	ACCTGC	1 cut(s)	589
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	3 cut(s)	275, 407, 798
BspTI	CTTAAG	1 cut(s)	110
BspTNI	GGTCTC	2 cut(s)	239, 773
BsrBI	CCGCTC	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	499, 673
BssECI	CCNNGG	2 cut(s)	210, 339
BssMI	GATC	5 cut(s)	99, 267, 271, 412, 790
Bst2UI	CCWGG	2 cut(s)	341, 621
Bst4CI	ACNGT	2 cut(s)	82, 163
BstAFI	CTTAAG	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	157, 651
BstDEI	CTNAG	2 cut(s)	422, 490
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	4 cut(s)	361, 634, 739, 761
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	5 cut(s)	102, 270, 274, 415, 793
BstMAI	GTCTC	5 cut(s)	239, 392, 408, 699, 773
BstMBI	GATC	5 cut(s)	99, 267, 271, 412, 790
BstNI	CCWGG	2 cut(s)	341, 621
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	339, 619
BstSFI	CTRYAG	1 cut(s)	220
BstSLI	GKGCMC	2 cut(s)	198, 309
BstUI	CGCG	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	270
Bsu36I	CCTNAGG	1 cut(s)	422
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	4 cut(s)	361, 634, 739, 761
BtsIMutI	CAGTG	5 cut(s)	109, 159, 376, 506, 737
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	2 cut(s)	157, 651
CfoI	GCGC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	530
CspCI	CAANNNNNGTGG	4 cut(s)	298, 333, 352, 387
CviAII	CATG	3 cut(s)	302, 750, 804
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	2 cut(s)	422, 490
DpnI	GATC	5 cut(s)	101, 269, 273, 414, 792
DpnII	GATC	5 cut(s)	99, 267, 271, 412, 790
DraIII	CACNNNGTG	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	454
Eco24I	GRGCYC	2 cut(s)	340, 456
Eco31I	GGTCTC	2 cut(s)	239, 773
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	381
Eco81I	CCTNAGG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	339, 619
EcoT38I	GRGCYC	2 cut(s)	340, 456
FaeI	CATG	3 cut(s)	305, 753, 807
FatI	CATG	3 cut(s)	301, 749, 803
FokI	GGATG	4 cut(s)	368, 621, 746, 748
FriOI	GRGCYC	2 cut(s)	340, 456
FspBI	CTAG	4 cut(s)	156, 231, 630, 888
GlaI	GCGC	1 cut(s)	108
GsaI	CCCAGC	1 cut(s)	548
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	305, 753, 807
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	2 cut(s)	319, 836
HindII	GTYRAC	2 cut(s)	319, 836
HinfI	GANTC	4 cut(s)	122, 401, 549, 826
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	2 cut(s)	319, 836
Hpy188I	TCNGA	2 cut(s)	400, 451
Hpy188III	TCNNGA	3 cut(s)	144, 202, 638
Hpy8I	GTNNAC	2 cut(s)	319, 836
Hpy99I	CGWCG	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	82, 163
HpyCH4V	TGCA	4 cut(s)	28, 350, 429, 737
HpyF3I	CTNAG	2 cut(s)	422, 490
Hsp92II	CATG	3 cut(s)	305, 753, 807
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	5 cut(s)	99, 267, 271, 412, 790
LmnI	GCTCC	3 cut(s)	116, 335, 763
LweI	GCATC	2 cut(s)	149, 724
MaeI	CTAG	4 cut(s)	156, 231, 630, 888
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	5 cut(s)	101, 269, 273, 414, 792
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	5 cut(s)	99, 267, 271, 412, 790
MboII	GAAGA	3 cut(s)	109, 245, 387
MhlI	GDGCHC	5 cut(s)	198, 309, 340, 363, 456
MluCI	AATT	4 cut(s)	281, 473, 688, 725
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	2 cut(s)	98, 496
MnlI	CCTC	3 cut(s)	85, 431, 651
MseI	TTAA	3 cut(s)	111, 438, 723
MslI	CAYNNNNRTG	2 cut(s)	300, 802
MspA1I	CMGCKG	1 cut(s)	188
MspCI	CTTAAG	1 cut(s)	110
MspR9I	CCNGG	2 cut(s)	341, 621
MvaI	CCWGG	2 cut(s)	341, 621
MvnI	CGCG	1 cut(s)	41
NdeII	GATC	5 cut(s)	99, 267, 271, 412, 790
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	3 cut(s)	305, 753, 807
NlaIV	GGNNCC	2 cut(s)	183, 337
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	305
PaqCI	CACCTGC	1 cut(s)	589
PciI	ACATGT	1 cut(s)	301
PfeI	GAWTC	3 cut(s)	122, 549, 826
PflMI	CCANNNNNTGG	2 cut(s)	191, 767
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PscI	ACATGT	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	339, 619
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	2 cut(s)	339, 619
PspN4I	GGNNCC	2 cut(s)	183, 337
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
RseI	CAYNNNNRTG	2 cut(s)	300, 802
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	3 cut(s)	111, 438, 723
Sau3AI	GATC	5 cut(s)	99, 267, 271, 412, 790
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	2 cut(s)	341, 621
SduI	GDGCHC	5 cut(s)	198, 309, 340, 363, 456
SetI	ASST	6 cut(s)	190, 280, 428, 456, 603, 651
SfaNI	GCATC	2 cut(s)	149, 724
SfcI	CTRYAG	1 cut(s)	220
SmiMI	CAYNNNNRTG	2 cut(s)	300, 802
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	281, 473, 688, 725
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	4 cut(s)	156, 231, 630, 888
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	339, 619
TaaI	ACNGT	2 cut(s)	82, 163
TaqI	TCGA	2 cut(s)	125, 270
TasI	AATT	4 cut(s)	281, 473, 688, 725
TatI	WGTACW	1 cut(s)	529
TfiI	GAWTC	3 cut(s)	122, 549, 826
Tru1I	TTAA	3 cut(s)	111, 438, 723
Tru9I	TTAA	3 cut(s)	111, 438, 723
TscAI	CASTG	5 cut(s)	109, 166, 376, 506, 744
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	229
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	5 cut(s)	109, 166, 376, 506, 744
Van91I	CCANNNNNTGG	2 cut(s)	191, 767
Vha464I	CTTAAG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	725
XceI	RCATGY	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	727
XspI	CTAG	4 cut(s)	156, 231, 630, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.