Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0022351

Physical Location & Seq

Genomic Coordinates Forward (+)

3381769 .. 3383074

Gene Structure 1306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAGTCAGGAAGCTAGGGCTCTCCTAAGTTTTATTAGCAACTCTTCTGAATTTGCTCTGTTTTGTAAGGAAAGATTCGACTCAAAACAAATCCCTACCGGACTAGGAGAACTAGCTTCCCATCCCACCACTATAAAACATATAATCAGAGACCCCAAAAAATCTCAAACAAGAAAGCCTACGTACATGGAAACTGATGAACAGTTCTGTGCAGATTGCAAGAAATACACACAAGTTGTGATTGACCACCGGTCGGGTGACACGATCTGCACCGACTGTGGTTTGATTGTTGAAGCCTTCAGCATCGATGTCACCGCCGAGTGGCGAAATTTTGCGGATAAGGATCCCAAGGAAGACCGGGCTCGCGTCGGTGCATCCTTGGATCCTTTGCTGGATAATGGCATTCTTACCACTTCTATTTCCCATGAAAAGAAGCAAAACAAGAACAGGGATAACGCCGAAGGCGTTGTTCCTCCAAATAACCTGTTGAATAACGTTGCGACGTCGAACCCTCAAATTTCTCTCGCAAAAGCTACGGAATACCTCGAAGCCATGGCTTACCGGCTAGACAAGCATGGCCTTCCCGAAGGCGTACTATATGATGCCAAAGTGCTATATAAGAAGGCCGTTGACAAGAAGATCTGCAGGGGGAGAAGGTTTGGTGCTATGATGGCCGCTTGCCTGTTCCTTGCTTGCCAAGAAAACCATAGTTCGCGAACACCAAAGGAAATCGCCGGGGCTGCCGATGGACCCTCCATGAAAGAAATTACCAAGATGGTAAAAGTGTTGAAAGAAGAGCTGGAGCTCGTTTCCAAAGCTACGGACGCTGGGGACCTATGGCGGCGATACTGCTCGAATCTTGGCATGAACCGTATTCAGGATCGGAAGGCTGTGGAAGAGACTCTGAAGAACTTGGCGAAGCTTGACATAAGGAGAAGCCCTACATCTGTTGTGGCAGCGGTTCTGTACATGATAGTGAAGCTTGCTTCCAATGGCAAAACTGTTGAAGATGTCCAGCAAGAAACTGGTGCTACCGTGGGGACGATTAAAAGCACATACAAGGAGATTTATCCCTATGCTTCAACGATAGTACCCAACTGGTACTGCAAGTACTTGGAGGACCTCAAGAAACTGAACAGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000769 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006949 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009960 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046686 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIB TF_Zn_Ribbon

Protein Analysis

382

Amino Acids

42.62

Weight (kDa)

8.73

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_Ribbon_TF	PF08271	69 - 111	1.4e-11	TFIIB zinc-binding
TFIIB	PF00382	174 - 246	1.8e-13	Transcription factor TFIIB repeat
TFIIB	PF00382	276 - 357	3.8e-06	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022351)

Species	Orthologous Gene IDs
malus_domestica	MD09G1062100.v1.1 MD09G1062200.v1.1
pyrus_communis	pycom111g05240 pycom111g05250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	506
AccII	CGCG	2 cut(s)	366, 715
AciI	CCGC	5 cut(s)	315, 335, 675, 841, 959
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	5 cut(s)	338, 351, 377, 390, 888
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	3 cut(s)	50, 328, 516
AcuI	CTGAAG	2 cut(s)	283, 926
AcyI	GRCGYC	1 cut(s)	503
AfaI	GTAC	6 cut(s)	185, 594, 968, 1092, 1103, 1112
AfiI	CCNNNNNNNGG	3 cut(s)	253, 321, 877
AgeI	ACCGGT	1 cut(s)	249
AgsI	TTSAA	5 cut(s)	293, 490, 790, 1007, 1083
AhdI	GACNNNNNGTC	1 cut(s)	250
AluBI	AGCT	8 cut(s)	14, 116, 533, 799, 805, 818, 922, 982
AluI	AGCT	8 cut(s)	14, 116, 533, 799, 805, 818, 922, 982
Alw21I	GWGCWC	1 cut(s)	807
Alw26I	GTCTC	2 cut(s)	144, 893
AlwI	GGATC	5 cut(s)	338, 351, 377, 390, 888
AoxI	GGCC	3 cut(s)	577, 624, 672
ApeKI	GCWGC	2 cut(s)	740, 956
ApoI	RAATTY	3 cut(s)	50, 328, 516
AsiGI	ACCGGT	1 cut(s)	249
AspS9I	GGNCC	3 cut(s)	749, 832, 1120
AsuC2I	CCSGG	2 cut(s)	359, 736
AsuHPI	GGTGA	2 cut(s)	269, 304
AvaII	GGWCC	3 cut(s)	749, 832, 1120
BaeI	ACNNNNGTAYC	2 cut(s)	1074, 1107
BamHI	GGATCC	2 cut(s)	343, 382
BanII	GRGCYC	3 cut(s)	22, 364, 807
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	807
BbvI	GCAGC	2 cut(s)	727, 968
BccI	CCATC	4 cut(s)	129, 664, 740, 769
BceAI	ACGGC	1 cut(s)	611
BcnI	CCSGG	2 cut(s)	359, 736
BcoDI	GTCTC	2 cut(s)	144, 893
BfaI	CTAG	4 cut(s)	15, 104, 113, 566
BfmI	CTRYAG	1 cut(s)	643
BglII	AGATCT	1 cut(s)	639
BisI	GCNGC	4 cut(s)	675, 741, 842, 957
BlsI	GCNGC	4 cut(s)	676, 742, 843, 958
BmcAI	AGTACT	1 cut(s)	1112
Bme1390I	CCNGG	2 cut(s)	359, 736
Bme18I	GGWCC	3 cut(s)	749, 832, 1120
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmgT120I	GGNCC	3 cut(s)	749, 832, 1120
BmiI	GGNNCC	4 cut(s)	345, 384, 751, 833
BmrFI	CCNGG	2 cut(s)	359, 736
BmsI	GCATC	3 cut(s)	312, 383, 592
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	821
BpuEI	CTTGAG	1 cut(s)	1109
BpuMI	CCSGG	2 cut(s)	359, 736
Bsa29I	ATCGAT	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	5 cut(s)	348, 378, 552, 735, 1035
BsaWI	WCCGGW	2 cut(s)	98, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 321, 877
Bse118I	RCCGGY	2 cut(s)	249, 561
Bse1I	ACTGG	2 cut(s)	1030, 1103
Bse8I	GATNNNNATC	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	5 cut(s)	348, 378, 552, 735, 1035
BseGI	GGATG	2 cut(s)	121, 374
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	3 cut(s)	253, 321, 877
BseNI	ACTGG	2 cut(s)	1030, 1103
BseXI	GCAGC	2 cut(s)	727, 968
BseYI	CCCAGC	1 cut(s)	827
BsgI	GTGCAG	2 cut(s)	231, 253
Bsh1236I	CGCG	2 cut(s)	366, 715
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	579, 626, 674
BshTI	ACCGGT	1 cut(s)	249
BshVI	ATCGAT	1 cut(s)	306
BsiEI	CGRYCG	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	807
BsiSI	CCGG	5 cut(s)	99, 250, 358, 562, 735
BslFI	GGGAC	2 cut(s)	845, 1054
BslI	CCNNNNNNNGG	3 cut(s)	253, 321, 877
BsmAI	GTCTC	2 cut(s)	144, 893
BsmFI	GGGAC	2 cut(s)	845, 1054
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	3 cut(s)	579, 626, 674
Bso31I	GGTCTC	1 cut(s)	144
Bsp1286I	GDGCHC	3 cut(s)	22, 364, 807
Bsp1407I	TGTACA	1 cut(s)	966
Bsp143I	GATC	5 cut(s)	264, 343, 382, 639, 880
Bsp19I	CCATGG	1 cut(s)	552
Bsp68I	TCGCGA	1 cut(s)	715
BspACI	CCGC	5 cut(s)	315, 335, 675, 841, 959
BspANI	GGCC	3 cut(s)	579, 626, 674
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	2 cut(s)	366, 715
BspLI	GGNNCC	4 cut(s)	345, 384, 751, 833
BspMAI	CTGCAG	1 cut(s)	647
BspPI	GGATC	5 cut(s)	338, 351, 377, 390, 888
BspQI	GCTCTTC	1 cut(s)	789
BspTNI	GGTCTC	1 cut(s)	144
BsrFI	RCCGGY	2 cut(s)	249, 561
BsrGI	TGTACA	1 cut(s)	966
BsrI	ACTGG	2 cut(s)	1030, 1103
BssAI	RCCGGY	2 cut(s)	249, 561
BssECI	CCNNGG	5 cut(s)	348, 378, 552, 735, 1035
BssMI	GATC	5 cut(s)	264, 343, 382, 639, 880
BssNI	GRCGYC	1 cut(s)	503
BssT1I	CCWWGG	3 cut(s)	348, 378, 552
Bst4CI	ACNGT	6 cut(s)	204, 278, 872, 1003, 1036, 1139
Bst6I	CTCTTC	3 cut(s)	49, 789, 891
BstACI	GRCGYC	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	966
BstBAI	YACGTR	1 cut(s)	183
BstC8I	GCNNGC	4 cut(s)	364, 679, 694, 984
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	2 cut(s)	552, 1035
BstF5I	GGATG	2 cut(s)	121, 374
BstFNI	CGCG	2 cut(s)	366, 715
BstKTI	GATC	5 cut(s)	267, 346, 385, 642, 883
BstMAI	GTCTC	2 cut(s)	144, 893
BstMBI	GATC	5 cut(s)	264, 343, 382, 639, 880
BstMCI	CGRYCG	1 cut(s)	254
BstMWI	GCNNNNNNNGC	4 cut(s)	571, 671, 740, 824
BstSCI	CCNGG	2 cut(s)	357, 734
BstSFI	CTRYAG	1 cut(s)	643
BstSNI	TACGTA	1 cut(s)	183
BstUI	CGCG	2 cut(s)	366, 715
BstV1I	GCAGC	2 cut(s)	727, 968
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	3 cut(s)	343, 382, 639
BstYI	RGATCY	3 cut(s)	343, 382, 639
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	579, 626, 674
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	2 cut(s)	552, 1035
BtsCI	GGATG	2 cut(s)	121, 374
BtuMI	TCGCGA	1 cut(s)	715
Cac8I	GCNNGC	4 cut(s)	364, 679, 694, 984
Cfr10I	RCCGGY	2 cut(s)	249, 561
Cfr13I	GGNCC	3 cut(s)	749, 832, 1120
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	2 cut(s)	355, 833
Csp6I	GTAC	6 cut(s)	184, 593, 967, 1091, 1102, 1111
CspAI	ACCGGT	1 cut(s)	249
CviAII	CATG	7 cut(s)	187, 425, 553, 575, 757, 865, 970
CviQI	GTAC	6 cut(s)	184, 593, 967, 1091, 1102, 1111
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	5 cut(s)	266, 345, 384, 641, 882
DpnII	GATC	5 cut(s)	264, 343, 382, 639, 880
DriI	GACNNNNNGTC	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	3 cut(s)	49, 789, 891
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EarI	CTCTTC	3 cut(s)	49, 789, 891
Ecl136II	GAGCTC	1 cut(s)	805
Eco105I	TACGTA	1 cut(s)	183
Eco130I	CCWWGG	3 cut(s)	348, 378, 552
Eco24I	GRGCYC	3 cut(s)	22, 364, 807
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	3 cut(s)	749, 832, 1120
Eco53kI	GAGCTC	1 cut(s)	805
Eco57I	CTGAAG	2 cut(s)	283, 926
EcoICRI	GAGCTC	1 cut(s)	805
EcoO109I	RGGNCCY	2 cut(s)	832, 1120
EcoT14I	CCWWGG	3 cut(s)	348, 378, 552
EcoT38I	GRGCYC	3 cut(s)	22, 364, 807
ErhI	CCWWGG	3 cut(s)	348, 378, 552
FaeI	CATG	7 cut(s)	190, 428, 556, 578, 760, 868, 973
FaqI	GGGAC	2 cut(s)	845, 1054
FatI	CATG	7 cut(s)	186, 424, 552, 574, 756, 864, 969
Fnu4HI	GCNGC	4 cut(s)	675, 741, 842, 957
FokI	GGATG	2 cut(s)	108, 361
FriOI	GRGCYC	3 cut(s)	22, 364, 807
Fsp4HI	GCNGC	4 cut(s)	675, 741, 842, 957
FspBI	CTAG	4 cut(s)	15, 104, 113, 566
GluI	GCNGC	4 cut(s)	675, 741, 842, 957
GsaI	CCCAGC	1 cut(s)	831
GsuI	CTGGAG	1 cut(s)	821
HaeIII	GGCC	3 cut(s)	579, 626, 674
HapII	CCGG	5 cut(s)	99, 250, 358, 562, 735
HgaI	GACGC	2 cut(s)	355, 833
Hin1I	GRCGYC	1 cut(s)	503
Hin1II	CATG	7 cut(s)	190, 428, 556, 578, 760, 868, 973
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HindIII	AAGCTT	2 cut(s)	920, 980
HinfI	GANTC	5 cut(s)	4, 75, 80, 856, 901
HpaII	CCGG	5 cut(s)	99, 250, 358, 562, 735
HphI	GGTGA	2 cut(s)	269, 304
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	4 cut(s)	49, 149, 885, 906
Hpy188III	TCNNGA	5 cut(s)	8, 584, 714, 878, 1126
Hpy8I	GTNNAC	1 cut(s)	631
Hpy99I	CGWCG	3 cut(s)	371, 505, 508
HpyAV	CCTTC	7 cut(s)	307, 455, 581, 590, 616, 648, 880
HpyCH4III	ACNGT	6 cut(s)	204, 278, 872, 1003, 1036, 1139
HpyCH4IV	ACGT	3 cut(s)	182, 495, 503
HpyCH4V	TGCA	6 cut(s)	212, 219, 270, 374, 645, 1107
HpyF10VI	GCNNNNNNNGC	4 cut(s)	571, 671, 740, 824
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	3 cut(s)	182, 495, 503
Hsp92I	GRCGYC	1 cut(s)	503
Hsp92II	CATG	7 cut(s)	190, 428, 556, 578, 760, 868, 973
Kzo9I	GATC	5 cut(s)	264, 343, 382, 639, 880
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	1 cut(s)	802
Lsp1109I	GCAGC	2 cut(s)	727, 968
LweI	GCATC	3 cut(s)	312, 383, 592
MaeI	CTAG	4 cut(s)	15, 104, 113, 566
MaeII	ACGT	3 cut(s)	182, 495, 503
MaeIII	GTNAC	2 cut(s)	257, 310
MalI	GATC	5 cut(s)	266, 345, 384, 641, 882
MboI	GATC	5 cut(s)	264, 343, 382, 639, 880
MboII	GAAGA	7 cut(s)	36, 365, 649, 806, 908, 919, 1019
MflI	RGATCY	3 cut(s)	343, 382, 639
MhlI	GDGCHC	3 cut(s)	22, 364, 807
MluCI	AATT	4 cut(s)	50, 328, 516, 765
MlyI	GAGTC	3 cut(s)	13, 74, 895
MnlI	CCTC	6 cut(s)	483, 522, 554, 763, 1111, 1133
MseI	TTAA	2 cut(s)	1047, 1144
MslI	CAYNNNNRTG	1 cut(s)	974
MspA1I	CMGCKG	1 cut(s)	959
MspI	CCGG	5 cut(s)	99, 250, 358, 562, 735
MspR9I	CCNGG	2 cut(s)	359, 736
Mva1269I	GAATGC	1 cut(s)	402
MvnI	CGCG	2 cut(s)	366, 715
MwoI	GCNNNNNNNGC	4 cut(s)	571, 671, 740, 824
NciI	CCSGG	2 cut(s)	359, 736
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	5 cut(s)	264, 343, 382, 639, 880
NlaIII	CATG	7 cut(s)	190, 428, 556, 578, 760, 868, 973
NlaIV	GGNNCC	4 cut(s)	345, 384, 751, 833
NmeAIII	GCCGAG	1 cut(s)	343
NmuCI	GTSAC	2 cut(s)	257, 310
NruI	TCGCGA	1 cut(s)	715
PciSI	GCTCTTC	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	2 cut(s)	260, 462
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	75, 856
PinAI	ACCGGT	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	676, 742, 843, 958
PleI	GAGTC	3 cut(s)	12, 74, 895
PpsI	GAGTC	3 cut(s)	12, 74, 895
Ppu21I	YACGTR	1 cut(s)	183
PpuMI	RGGWCCY	2 cut(s)	832, 1120
Psp124BI	GAGCTC	1 cut(s)	807
Psp1406I	AACGTT	1 cut(s)	495
Psp5II	RGGWCCY	2 cut(s)	832, 1120
PspFI	CCCAGC	1 cut(s)	827
PspN4I	GGNNCC	4 cut(s)	345, 384, 751, 833
PspPI	GGNCC	3 cut(s)	749, 832, 1120
PspPPI	RGGWCCY	2 cut(s)	832, 1120
PstI	CTGCAG	1 cut(s)	647
PsuI	RGATCY	3 cut(s)	343, 382, 639
RruI	TCGCGA	1 cut(s)	715
RsaI	GTAC	6 cut(s)	185, 594, 968, 1092, 1103, 1112
RsaNI	GTAC	6 cut(s)	184, 593, 967, 1091, 1102, 1111
RseI	CAYNNNNRTG	1 cut(s)	974
SacI	GAGCTC	1 cut(s)	807
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	2 cut(s)	1047, 1144
SatI	GCNGC	4 cut(s)	675, 741, 842, 957
Sau3AI	GATC	5 cut(s)	264, 343, 382, 639, 880
Sau96I	GGNCC	3 cut(s)	749, 832, 1120
ScaI	AGTACT	1 cut(s)	1112
SchI	GAGTC	3 cut(s)	13, 74, 895
ScrFI	CCNGG	2 cut(s)	359, 736
SduI	GDGCHC	3 cut(s)	22, 364, 807
SfaNI	GCATC	3 cut(s)	312, 383, 592
SfcI	CTRYAG	1 cut(s)	643
SinI	GGWCC	3 cut(s)	749, 832, 1120
SmiMI	CAYNNNNRTG	1 cut(s)	974
SmlI	CTYRAG	1 cut(s)	1124
SmoI	CTYRAG	1 cut(s)	1124
SnaBI	TACGTA	1 cut(s)	183
Sse9I	AATT	4 cut(s)	50, 328, 516, 765
SsiI	CCGC	5 cut(s)	315, 335, 675, 841, 959
SspMI	CTAG	4 cut(s)	15, 104, 113, 566
SstI	GAGCTC	1 cut(s)	807
StyD4I	CCNGG	2 cut(s)	357, 734
StyI	CCWWGG	3 cut(s)	348, 378, 552
TaaI	ACNGT	6 cut(s)	204, 278, 872, 1003, 1036, 1139
TaiI	ACGT	3 cut(s)	185, 498, 506
TaqI	TCGA	5 cut(s)	78, 306, 506, 546, 854
TasI	AATT	4 cut(s)	50, 328, 516, 765
TatI	WGTACW	2 cut(s)	966, 1110
TauI	GCSGC	2 cut(s)	677, 844
TfiI	GAWTC	2 cut(s)	75, 856
Tru1I	TTAA	2 cut(s)	1047, 1144
Tru9I	TTAA	2 cut(s)	1047, 1144
TseFI	GTSAC	2 cut(s)	257, 310
TseI	GCWGC	2 cut(s)	740, 956
Tsp45I	GTSAC	2 cut(s)	257, 310
TspDTI	ATGAA	4 cut(s)	213, 441, 773, 881
TspGWI	ACGGA	2 cut(s)	551, 836
VpaK11BI	GGWCC	3 cut(s)	749, 832, 1120
XapI	RAATTY	3 cut(s)	50, 328, 516
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1022
XspI	CTAG	4 cut(s)	15, 104, 113, 566
ZraI	GACGTC	1 cut(s)	504
ZrmI	AGTACT	1 cut(s)	1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.