Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0028892

Physical Location & Seq

Genomic Coordinates Reverse (-)

198579 .. 199111

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTGTCCGGAGTCGTTGCCCTTATCAAATCTGCACATCCGAATTGGTCTCCCGCAGTCAGTTGGTCTGCTCTCATCACCACGGCCATTGATCATAATTCATGTTCAATTGTCACTGCAAACACGATGGACACATCCTTTGACATTGGTGCCGGCCACATTGATTGACCCCATCAAACGGATGGATCCAGGCCTTGTTTACGACATGAAAACAAGCGAATACGTTCTATTCCTCCGCAACATTGGCTACACCGGTGACCAAATCAATCAGATTTTCTTTGCTCTCCCGGAAGTGACACGAGCTGTCCACAAGTACGAACTTCAAATTTTCAACATAAACTGCCCCTCCATCACAGTTACCAATTTCCAATCTCCAATCCACCGTGACGATCAAAAAAAGCGTCCGCAACGTGGGGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009566 GO:0009567 GO:0016787 GO:0017171 GO:0019538 GO:0019953 GO:0022414 GO:0043170 GO:0044238 GO:0044703 GO:0051704 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

141

Amino Acids

16.03

Weight (kDa)

9.06

Isoelectric Point (pI)

64.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028892)

Species	Orthologous Gene IDs
malus_domestica	MD11G1002500.v1.1
pyrus_communis	pycom11g00230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	148
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	3 cut(s)	53, 235, 404
AclWI	GGATC	2 cut(s)	179, 192
AcoI	YGGCCR	2 cut(s)	83, 153
AcsI	RAATTY	1 cut(s)	324
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	2 cut(s)	177, 410
AgeI	ACCGGT	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	107, 323, 331
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	179, 192
Aor13HI	TCCGGA	1 cut(s)	7
AoxI	GGCC	3 cut(s)	83, 153, 190
ApoI	RAATTY	1 cut(s)	324
ArsI	GACNNNNNNTTYG	4 cut(s)	121, 153, 385, 417
AsiGI	ACCGGT	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	69, 266
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	148
BauI	CACGAG	1 cut(s)	297
BccI	CCATC	4 cut(s)	120, 175, 179, 356
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	189, 287
BmiI	GGNNCC	2 cut(s)	150, 186
BmrFI	CCNGG	2 cut(s)	189, 287
BpuMI	CCSGG	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	2 cut(s)	7, 251
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 410
Bse118I	RCCGGY	2 cut(s)	151, 251
BseAI	TCCGGA	1 cut(s)	7
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	3 cut(s)	36, 133, 186
BseLI	CCNNNNNNNGG	2 cut(s)	177, 410
BsgI	GTGCAG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	85, 155, 192
BshNI	GGYRCC	1 cut(s)	148
BshTI	ACCGGT	1 cut(s)	251
BsiSI	CCGG	4 cut(s)	8, 152, 252, 287
BslI	CCNNNNNNNGG	2 cut(s)	177, 410
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	3 cut(s)	85, 155, 192
Bso31I	GGTCTC	1 cut(s)	53
Bsp13I	TCCGGA	1 cut(s)	7
Bsp143I	GATC	3 cut(s)	90, 184, 388
BspACI	CCGC	3 cut(s)	53, 235, 404
BspANI	GGCC	3 cut(s)	85, 155, 192
BspEI	TCCGGA	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	150, 186
BspPI	GGATC	2 cut(s)	179, 192
BspT107I	GGYRCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	53
BsrFI	RCCGGY	2 cut(s)	151, 251
BssAI	RCCGGY	2 cut(s)	151, 251
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	3 cut(s)	90, 184, 388
BssSI	CACGAG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	355, 383
BstC8I	GCNNGC	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	80
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	3 cut(s)	36, 133, 186
BstKTI	GATC	3 cut(s)	93, 187, 391
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	3 cut(s)	90, 184, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	187, 285
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	85, 155, 192
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	36, 133, 186
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	153
Cfr10I	RCCGGY	2 cut(s)	151, 251
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	313
CspAI	ACCGGT	1 cut(s)	251
CspCI	CAANNNNNGTGG	4 cut(s)	69, 104, 145, 180
CviAII	CATG	2 cut(s)	101, 205
CviJI	RGCY	5 cut(s)	85, 155, 192, 246, 302
CviKI_1	RGCY	5 cut(s)	85, 155, 192, 246, 302
CviQI	GTAC	1 cut(s)	313
DpnI	GATC	3 cut(s)	92, 186, 390
DpnII	GATC	3 cut(s)	90, 184, 388
EaeI	YGGCCR	2 cut(s)	83, 153
Eco147I	AGGCCT	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	53
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	104, 208
FaiI	YATR	4 cut(s)	95, 102, 206, 335
FatI	CATG	2 cut(s)	100, 204
FauI	CCCGC	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	90
FokI	GGATG	3 cut(s)	23, 120, 193
HaeIII	GGCC	3 cut(s)	85, 155, 192
HapII	CCGG	4 cut(s)	8, 152, 252, 287
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	2 cut(s)	104, 208
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	4 cut(s)	8, 152, 252, 287
HphI	GGTGA	2 cut(s)	69, 266
Hpy166II	GTNNAC	2 cut(s)	199, 307
Hpy188I	TCNGA	2 cut(s)	41, 270
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	2 cut(s)	199, 307
HpyCH4III	ACNGT	2 cut(s)	355, 383
HpyCH4IV	ACGT	2 cut(s)	222, 409
HpyCH4V	TGCA	2 cut(s)	34, 118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	222, 409
Hsp92II	CATG	2 cut(s)	104, 208
Kpn2I	TCCGGA	1 cut(s)	7
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 184, 388
LpnPI	CCDG	6 cut(s)	21, 165, 174, 201, 265, 300
MaeII	ACGT	2 cut(s)	222, 409
MaeIII	GTNAC	5 cut(s)	111, 254, 292, 355, 383
MalI	GATC	3 cut(s)	92, 186, 390
MboI	GATC	3 cut(s)	90, 184, 388
MfeI	CAATTG	1 cut(s)	107
MflI	RGATCY	1 cut(s)	184
MluCI	AATT	5 cut(s)	42, 96, 107, 324, 361
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	2 cut(s)	242, 355
MroI	TCCGGA	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	222
MspI	CCGG	4 cut(s)	8, 152, 252, 287
MspR9I	CCNGG	2 cut(s)	189, 287
MunI	CAATTG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	243
NaeI	GCCGGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	3 cut(s)	90, 184, 388
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	104, 208
NlaIV	GGNNCC	2 cut(s)	150, 186
NmuCI	GTSAC	4 cut(s)	111, 254, 292, 383
PceI	AGGCCT	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	222
PfoI	TCCNGGA	1 cut(s)	285
PinAI	ACCGGT	1 cut(s)	251
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	187
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	150, 186
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
Sau3AI	GATC	3 cut(s)	90, 184, 388
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	189, 287
SetI	ASST	3 cut(s)	225, 304, 412
SgrAI	CRCCGGYG	1 cut(s)	251
Sse9I	AATT	5 cut(s)	42, 96, 107, 324, 361
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	3 cut(s)	53, 235, 404
StuI	AGGCCT	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	187, 285
TaaI	ACNGT	2 cut(s)	355, 383
TaiI	ACGT	2 cut(s)	225, 412
TasI	AATT	5 cut(s)	42, 96, 107, 324, 361
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	4 cut(s)	111, 254, 292, 383
Tsp45I	GTSAC	4 cut(s)	111, 254, 292, 383
TspDTI	ATGAA	2 cut(s)	89, 221
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	120
XapI	RAATTY	1 cut(s)	324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.