Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0019296

Physical Location & Seq

Genomic Coordinates Reverse (-)

811252 .. 812250

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCTCCTGGAGGTCGCTTCTGTGAGGATGTGGCTGAGTCTCGTATGGCATTTGCAGATACTGATGTTGCAACTTCCGCTGCTGATCTAAGGGCTTCCCCTTTCAGAAAAGCTGCTGCTGGTTTGATTGGAAACCCTGGACTGCCACCAAATAGTAATGTGCATGATCTACTCGAGTGTCCTGTTTGCATGAATTTAATGTGTCCTCCAATTCACCAGTGTCCAAATGGCCATACTCTTTGCTCGAGCTGTAAGGTTAGAGTGCACAACTGTTGCCCCACTTGTCGAAACGAACTTGGAAATATAAGGTGCTTGGCACTGGAGAAAGTAGCAGAGTCTCTGGATCTTCCTTGTAGATACCAAATTTATGGTTGCCAAGATATATTCCCATACTTCAGCAAGCTAAAGCATGAGAAAATCTGTAACTATCGTCCGTACAGTTGCCCTTATGCTGGAGCTGAATGTTCTGTCACTGGAGATATCCAATTCCTTATGATGCATCTTAAAAATCGATCACAAGGTCGACATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901564 GO:1902115 GO:1902584 GO:2000070 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

178

Amino Acids

19.51

Weight (kDa)

7.87

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	60 - 95	4e-11	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	109 - 171	7.7e-25	Sina, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019296)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1
pyrus_communis	pycom11g01020
rosa_rugosa	Rorug05G0474900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	523
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	1 cut(s)	351
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	2 cut(s)	193, 363
AcuI	CTGAAG	1 cut(s)	379
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	452
AjnI	CCWGG	2 cut(s)	7, 136
AluBI	AGCT	4 cut(s)	113, 249, 403, 458
AluI	AGCT	4 cut(s)	113, 249, 403, 458
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	3 cut(s)	9, 45, 342
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	351
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	2 cut(s)	173, 244
AoxI	GGCC	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	263
ApeKI	GCWGC	3 cut(s)	80, 113, 116
ApoI	RAATTY	2 cut(s)	193, 363
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	2 cut(s)	173, 244
BaeGI	GKGCMC	1 cut(s)	267
BaeI	ACNNNNGTAYC	2 cut(s)	51, 84
BalI	TGGCCA	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	67, 100, 103
BciT130I	CCWGG	2 cut(s)	9, 138
BcoDI	GTCTC	3 cut(s)	9, 45, 342
BisI	GCNGC	3 cut(s)	81, 114, 117
BlsI	GCNGC	3 cut(s)	82, 115, 118
Bme1390I	CCNGG	2 cut(s)	9, 138
BmeT110I	CYCGRG	2 cut(s)	173, 244
BmrFI	CCNGG	2 cut(s)	9, 138
BmsI	GCATC	2 cut(s)	486, 508
BpmI	CTGGAG	4 cut(s)	30, 341, 474, 495
Bsa29I	ATCGAT	1 cut(s)	511
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	3 cut(s)	217, 324, 478
BseBI	CCWGG	2 cut(s)	9, 138
BseCI	ATCGAT	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	3 cut(s)	217, 324, 478
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	67, 100, 103
BshFI	GGCC	1 cut(s)	231
BshVI	ATCGAT	1 cut(s)	511
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	2 cut(s)	173, 244
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	3 cut(s)	9, 45, 342
BsnI	GGCC	1 cut(s)	231
BsoBI	CYCGRG	2 cut(s)	173, 244
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	85, 166, 343, 512
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	28
BspDI	ATCGAT	1 cut(s)	511
BspPI	GGATC	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	217, 324, 478
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	4 cut(s)	85, 166, 343, 512
Bst2UI	CCWGG	2 cut(s)	9, 138
Bst4CI	ACNGT	2 cut(s)	272, 440
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	2 cut(s)	36, 89
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	4 cut(s)	88, 169, 346, 515
BstMAI	GTCTC	3 cut(s)	9, 45, 342
BstMBI	GATC	4 cut(s)	85, 166, 343, 512
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	2 cut(s)	9, 138
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	7, 136
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	67, 100, 103
BstX2I	RGATCY	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	3 cut(s)	224, 317, 471
Cac8I	GCNNGC	1 cut(s)	401
CaiI	CAGNNNCTG	1 cut(s)	62
ClaI	ATCGAT	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	5 cut(s)	164, 190, 410, 527, 531
CviJI	RGCY	7 cut(s)	35, 95, 113, 231, 249, 403, 458
CviKI_1	RGCY	7 cut(s)	35, 95, 113, 231, 249, 403, 458
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	2 cut(s)	36, 89
DpnI	GATC	4 cut(s)	87, 168, 345, 514
DpnII	GATC	4 cut(s)	85, 166, 343, 512
EaeI	YGGCCR	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	379
Eco88I	CYCGRG	2 cut(s)	173, 244
EcoRII	CCWGG	2 cut(s)	7, 136
EcoRV	GATATC	1 cut(s)	481
EcoT22I	ATGCAT	2 cut(s)	501, 532
FaeI	CATG	5 cut(s)	167, 193, 413, 530, 534
FatI	CATG	5 cut(s)	163, 189, 409, 526, 530
FblI	GTMKAC	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	81, 114, 117
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	81, 114, 117
GluI	GCNGC	3 cut(s)	81, 114, 117
GsuI	CTGGAG	4 cut(s)	30, 341, 474, 495
HaeIII	GGCC	1 cut(s)	231
Hin1II	CATG	5 cut(s)	167, 193, 413, 530, 534
HincII	GTYRAC	1 cut(s)	524
HindII	GTYRAC	1 cut(s)	524
HinfI	GANTC	2 cut(s)	38, 335
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	265, 524
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	2 cut(s)	265, 524
HpyCH4III	ACNGT	2 cut(s)	272, 440
HpyCH4V	TGCA	7 cut(s)	56, 71, 163, 189, 265, 499, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	36, 89
Hsp92II	CATG	5 cut(s)	167, 193, 413, 530, 534
Kzo9I	GATC	4 cut(s)	85, 166, 343, 512
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	3 cut(s)	67, 100, 103
LweI	GCATC	2 cut(s)	486, 508
MaeIII	GTNAC	2 cut(s)	422, 469
MalI	GATC	4 cut(s)	87, 168, 345, 514
MboI	GATC	4 cut(s)	85, 166, 343, 512
MboII	GAAGA	1 cut(s)	338
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	4 cut(s)	193, 210, 363, 485
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	47, 344
MnlI	CCTC	3 cut(s)	5, 19, 216
Mox20I	TGGCCA	1 cut(s)	231
Mph1103I	ATGCAT	2 cut(s)	501, 532
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	2 cut(s)	197, 504
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	9, 138
MvaI	CCWGG	2 cut(s)	9, 138
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	4 cut(s)	85, 166, 343, 512
NlaIII	CATG	5 cut(s)	167, 193, 413, 530, 534
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	2 cut(s)	501, 532
NspI	RCATGY	1 cut(s)	530
PaeR7I	CTCGAG	2 cut(s)	173, 244
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	82, 115, 118
PleI	GAGTC	2 cut(s)	46, 343
PpsI	GAGTC	2 cut(s)	46, 343
Psp6I	CCWGG	2 cut(s)	7, 136
PspGI	CCWGG	2 cut(s)	7, 136
PspXI	VCTCGAGB	2 cut(s)	173, 244
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SalI	GTCGAC	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	197, 504
SatI	GCNGC	3 cut(s)	81, 114, 117
Sau3AI	GATC	4 cut(s)	85, 166, 343, 512
SchI	GAGTC	2 cut(s)	47, 344
ScrFI	CCNGG	2 cut(s)	9, 138
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	8 cut(s)	16, 115, 251, 258, 311, 405, 460, 523
SfaNI	GCATC	2 cut(s)	486, 508
Sfr274I	CTCGAG	2 cut(s)	173, 244
SlaI	CTCGAG	2 cut(s)	173, 244
SmlI	CTYRAG	2 cut(s)	173, 244
SmoI	CTYRAG	2 cut(s)	173, 244
Sse9I	AATT	4 cut(s)	193, 210, 363, 485
SsiI	CCGC	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	7, 136
TaaI	ACNGT	2 cut(s)	272, 440
TaqI	TCGA	5 cut(s)	174, 245, 286, 511, 523
TasI	AATT	4 cut(s)	193, 210, 363, 485
Tru1I	TTAA	2 cut(s)	197, 504
Tru9I	TTAA	2 cut(s)	197, 504
TscAI	CASTG	3 cut(s)	224, 324, 478
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	3 cut(s)	80, 113, 116
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	1 cut(s)	206
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	3 cut(s)	224, 324, 478
VneI	GTGCAC	1 cut(s)	263
XapI	RAATTY	2 cut(s)	193, 363
XceI	RCATGY	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XhoI	CTCGAG	2 cut(s)	173, 244
XmiI	GTMKAC	1 cut(s)	523
Zsp2I	ATGCAT	2 cut(s)	501, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.