Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0019296

Physical Location & Seq

Genomic Coordinates Reverse (-)

65227744 .. 65228874

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0474900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGCAAGAAGCCCCCGAAGCTACTCTGACTCTTCCATCCTTGCAGGTTATTGCTCCCATCTCGGACATGGCTAATCGTATGATGCAATCTGATGACACCGCACCTACAAATTATGATAGCCTGGCACTCTCCATCCCTCCTGGGTTCACTTTCCCACCTCTCTACAATCGCAACCCTGGCACTCTTTCCATCAATGAACCATCTCCAAATACAAGTACGGGTGAAATTGACACCTGTCTGGGCCACTTCATGGACCCCGAAGCCCAAGCAAGCCTGACTCCCATCGGCCCTAGAGATAAAGGCAAGTCCAAAATGTTCGATCAACAAATGGAGGCCATCCTGCAAGCTAACCCTTTCCTAAGGCCCAACCCTCAAATCCTTCCACCAGATGCTTTTCTAGAGTACCAAGCCACCCACATGCTTCTTCAAAATCACACCCCTACACCTAACCCCCATGAGCTGGCTGGTCCATCCATAACTCACACCCACCCACCCGACCCCTACAATCTCCTCTCTGGCTTTGAACAAACCCACCTCAACAAAAACTTTCCCCATTCCTATCTCAATCACACCAACTCCACTCCACCTACTGAAACCACCATCACTTTCATATCATCTACCCTTGAGCAACTCAATCTGAAACGTCTGGGCTCCGAAATTGCTGACCTTCCCTCCCCAAAACGGCCATGCCAGAATCCCACTGTTGAGACAGATAATGTTATCCTCCCTCCTCCTGCCCCCCCCCCCCCCCCCACTTTACCTCAAGAAATCAACCCCTCTGCCAAGGGACGAGGTCGTGGCAGGGGCCGAGCCAAATCTCCCTCTTCCTCTCGTGGCGGTCGTGGCCGTGGCCGAGGACGGAACAGCCCAAGGGGAGGCCGAGCTCCAAAAGATACCACAACCCACACTTCGTACTCTCAAGATTGGGCTTCCCAAGTTCATGTGGGCACCATCATTCAAGGAGAATCTCTGTTTGAAGTTCAGATCCAAGTAGAGGAACAACTCCAAATCATTCATCATCACCTCCCTCCTAATCCAAACCCTCCGACAGCTCGTATTGAGGAACTCTCTGATCCGAGCTCGGATGATGGCCGTGGTGGCTGGCCTGGGGCAGCCACAGACCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901564 GO:1902115 GO:1902584 GO:2000070 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

376

Amino Acids

40.91

Weight (kDa)

5.76

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019296)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1
pyrus_communis	pycom11g01020
rosa_rugosa	Rorug05G0474900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	947
AccB7I	CCANNNNNTGG	2 cut(s)	250, 460
AciI	CCGC	2 cut(s)	99, 837
AclWI	GGATC	2 cut(s)	979, 1067
AcoI	YGGCCR	4 cut(s)	683, 844, 850, 1090
AfaI	GTAC	3 cut(s)	217, 404, 914
AfiI	CCNNNNNNNGG	5 cut(s)	250, 460, 681, 875, 994
AgsI	TTSAA	4 cut(s)	428, 524, 959, 977
AjnI	CCWGG	4 cut(s)	120, 139, 175, 1105
AluBI	AGCT	6 cut(s)	20, 347, 460, 884, 1052, 1080
AluI	AGCT	6 cut(s)	20, 347, 460, 884, 1052, 1080
Alw21I	GWGCWC	2 cut(s)	886, 1082
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	2 cut(s)	979, 1067
ApeKI	GCWGC	1 cut(s)	1112
AspS9I	GGNCC	6 cut(s)	241, 253, 287, 363, 467, 805
AsuHPI	GGTGA	2 cut(s)	233, 1013
AvaII	GGWCC	2 cut(s)	253, 467
AxyI	CCTNAGG	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	950
BanI	GGYRCC	1 cut(s)	947
BanII	GRGCYC	3 cut(s)	653, 886, 1082
BauI	CACGAG	1 cut(s)	831
Bbv12I	GWGCWC	2 cut(s)	886, 1082
BbvI	GCAGC	1 cut(s)	1124
BceAI	ACGGC	3 cut(s)	698, 831, 1077
BciT130I	CCWGG	4 cut(s)	122, 141, 177, 1107
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	2 cut(s)	291, 398
BfuAI	ACCTGC	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	1098
BisI	GCNGC	1 cut(s)	1113
BlsI	GCNGC	1 cut(s)	1114
Bme1390I	CCNGG	4 cut(s)	122, 141, 177, 1107
Bme18I	GGWCC	2 cut(s)	253, 467
BmgT120I	GGNCC	6 cut(s)	241, 253, 287, 363, 467, 805
BmiI	GGNNCC	4 cut(s)	255, 652, 806, 949
BmrFI	CCNGG	4 cut(s)	122, 141, 177, 1107
BmsI	GCATC	2 cut(s)	72, 379
BoxI	GACNNNNGTC	1 cut(s)	234
BplI	GAGNNNNNCTC	2 cut(s)	1052, 1084
BpuEI	CTTGAG	3 cut(s)	644, 747, 903
BsaJI	CCNNGG	8 cut(s)	140, 175, 783, 847, 853, 869, 1093, 1106
BsaXI	ACNNNNNCTCC	4 cut(s)	560, 590, 656, 686
Bsc4I	CCNNNNNNNGG	5 cut(s)	250, 460, 681, 875, 994
Bse21I	CCTNAGG	1 cut(s)	359
BseBI	CCWGG	4 cut(s)	122, 141, 177, 1107
BseDI	CCNNGG	8 cut(s)	140, 175, 783, 847, 853, 869, 1093, 1106
BseGI	GGATG	5 cut(s)	35, 132, 336, 470, 1090
BseLI	CCNNNNNNNGG	5 cut(s)	250, 460, 681, 875, 994
BseRI	GAGGAG	2 cut(s)	500, 720
BseSI	GKGCMC	1 cut(s)	950
BseXI	GCAGC	1 cut(s)	1124
Bsh1285I	CGRYCG	1 cut(s)	841
BshNI	GGYRCC	1 cut(s)	947
BsiEI	CGRYCG	1 cut(s)	841
BsiHKAI	GWGCWC	2 cut(s)	886, 1082
BslFI	GGGAC	1 cut(s)	801
BslI	CCNNNNNNNGG	5 cut(s)	250, 460, 681, 875, 994
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	1 cut(s)	801
Bsp1286I	GDGCHC	4 cut(s)	653, 886, 950, 1082
Bsp143I	GATC	3 cut(s)	319, 984, 1072
BspACI	CCGC	2 cut(s)	99, 837
BspLI	GGNNCC	4 cut(s)	255, 652, 806, 949
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	979, 1067
BspT107I	GGYRCC	1 cut(s)	947
BssECI	CCNNGG	8 cut(s)	140, 175, 783, 847, 853, 869, 1093, 1106
BssMI	GATC	3 cut(s)	319, 984, 1072
BssSI	CACGAG	1 cut(s)	831
BssT1I	CCWWGG	2 cut(s)	783, 869
Bst2BI	CACGAG	1 cut(s)	831
Bst2UI	CCWGG	4 cut(s)	122, 141, 177, 1107
Bst4CI	ACNGT	1 cut(s)	703
Bst6I	CTCTTC	2 cut(s)	36, 829
BstC8I	GCNNGC	4 cut(s)	271, 345, 462, 1103
BstDEI	CTNAG	1 cut(s)	359
BstDSI	CCRYGG	2 cut(s)	847, 1093
BstF5I	GGATG	5 cut(s)	35, 132, 336, 470, 1090
BstKTI	GATC	3 cut(s)	322, 987, 1075
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	3 cut(s)	319, 984, 1072
BstMCI	CGRYCG	1 cut(s)	841
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 177, 843, 1098
BstNI	CCWGG	4 cut(s)	122, 141, 177, 1107
BstNSI	RCATGY	1 cut(s)	421
BstPAI	GACNNNNGTC	1 cut(s)	234
BstSCI	CCNGG	4 cut(s)	120, 139, 175, 1105
BstSLI	GKGCMC	1 cut(s)	950
BstV1I	GCAGC	1 cut(s)	1124
BstX2I	RGATCY	1 cut(s)	984
BstYI	RGATCY	1 cut(s)	984
Bsu36I	CCTNAGG	1 cut(s)	359
BtgI	CCRYGG	2 cut(s)	847, 1093
BtsCI	GGATG	5 cut(s)	35, 132, 336, 470, 1090
BtsIMutI	CAGTG	1 cut(s)	699
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	4 cut(s)	271, 345, 462, 1103
Cfr13I	GGNCC	6 cut(s)	241, 253, 287, 363, 467, 805
Csp6I	GTAC	3 cut(s)	216, 403, 913
CviAII	CATG	7 cut(s)	67, 250, 418, 455, 687, 941, 1128
CviQI	GTAC	3 cut(s)	216, 403, 913
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	3 cut(s)	321, 986, 1074
DpnII	GATC	3 cut(s)	319, 984, 1072
EaeI	YGGCCR	4 cut(s)	683, 844, 850, 1090
Eam1104I	CTCTTC	2 cut(s)	36, 829
EarI	CTCTTC	2 cut(s)	36, 829
Ecl136II	GAGCTC	2 cut(s)	884, 1080
Eco130I	CCWWGG	2 cut(s)	783, 869
Eco24I	GRGCYC	3 cut(s)	653, 886, 1082
Eco47I	GGWCC	2 cut(s)	253, 467
Eco53kI	GAGCTC	2 cut(s)	884, 1080
Eco81I	CCTNAGG	1 cut(s)	359
EcoICRI	GAGCTC	2 cut(s)	884, 1080
EcoRII	CCWGG	4 cut(s)	120, 139, 175, 1105
EcoT14I	CCWWGG	2 cut(s)	783, 869
EcoT38I	GRGCYC	3 cut(s)	653, 886, 1082
ErhI	CCWWGG	2 cut(s)	783, 869
FaeI	CATG	7 cut(s)	70, 253, 421, 458, 690, 944, 1131
FaqI	GGGAC	1 cut(s)	801
FatI	CATG	7 cut(s)	66, 249, 417, 454, 686, 940, 1127
Fnu4HI	GCNGC	1 cut(s)	1113
FokI	GGATG	5 cut(s)	22, 119, 323, 457, 1097
FriOI	GRGCYC	3 cut(s)	653, 886, 1082
Fsp4HI	GCNGC	1 cut(s)	1113
FspBI	CTAG	2 cut(s)	291, 398
GluI	GCNGC	1 cut(s)	1113
Hin1II	CATG	7 cut(s)	70, 253, 421, 458, 690, 944, 1131
HinfI	GANTC	4 cut(s)	28, 277, 694, 965
HphI	GGTGA	2 cut(s)	233, 1013
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188III	TCNNGA	3 cut(s)	398, 764, 920
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	389, 677
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	4 cut(s)	4, 43, 85, 343
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 177, 843, 1098
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	7 cut(s)	70, 253, 421, 458, 690, 944, 1131
Kzo9I	GATC	3 cut(s)	319, 984, 1072
LmnI	GCTCC	3 cut(s)	58, 656, 889
Lsp1109I	GCAGC	1 cut(s)	1124
LweI	GCATC	2 cut(s)	72, 379
MaeI	CTAG	2 cut(s)	291, 398
MaeII	ACGT	1 cut(s)	643
MalI	GATC	3 cut(s)	321, 986, 1074
MboI	GATC	3 cut(s)	319, 984, 1072
MboII	GAAGA	3 cut(s)	23, 416, 816
MflI	RGATCY	1 cut(s)	984
MhlI	GDGCHC	4 cut(s)	653, 886, 950, 1082
MluCI	AATT	3 cut(s)	109, 225, 657
MlyI	GAGTC	2 cut(s)	22, 271
MmeI	TCCRAC	1 cut(s)	1070
MslI	CAYNNNNRTG	1 cut(s)	416
MspR9I	CCNGG	4 cut(s)	122, 141, 177, 1107
MvaI	CCWGG	4 cut(s)	122, 141, 177, 1107
MwoI	GCNNNNNNNGC	4 cut(s)	17, 177, 843, 1098
NdeII	GATC	3 cut(s)	319, 984, 1072
NlaIII	CATG	7 cut(s)	70, 253, 421, 458, 690, 944, 1131
NlaIV	GGNNCC	4 cut(s)	255, 652, 806, 949
NmeAIII	GCCGAG	3 cut(s)	833, 878, 905
NspI	RCATGY	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	1 cut(s)	838
PfeI	GAWTC	2 cut(s)	694, 965
PflFI	GACNNNGTC	1 cut(s)	792
PflMI	CCANNNNNTGG	2 cut(s)	250, 460
PkrI	GCNGC	1 cut(s)	1114
PleI	GAGTC	2 cut(s)	22, 271
PpsI	GAGTC	2 cut(s)	22, 271
PshAI	GACNNNNGTC	1 cut(s)	234
Psp124BI	GAGCTC	2 cut(s)	886, 1082
Psp6I	CCWGG	4 cut(s)	120, 139, 175, 1105
PspGI	CCWGG	4 cut(s)	120, 139, 175, 1105
PspN4I	GGNNCC	4 cut(s)	255, 652, 806, 949
PspPI	GGNCC	6 cut(s)	241, 253, 287, 363, 467, 805
PsuI	RGATCY	1 cut(s)	984
PsyI	GACNNNGTC	1 cut(s)	792
RsaI	GTAC	3 cut(s)	217, 404, 914
RsaNI	GTAC	3 cut(s)	216, 403, 913
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	2 cut(s)	886, 1082
SatI	GCNGC	1 cut(s)	1113
Sau3AI	GATC	3 cut(s)	319, 984, 1072
Sau96I	GGNCC	6 cut(s)	241, 253, 287, 363, 467, 805
SchI	GAGTC	2 cut(s)	22, 271
ScrFI	CCNGG	4 cut(s)	122, 141, 177, 1107
SduI	GDGCHC	4 cut(s)	653, 886, 950, 1082
SfaNI	GCATC	2 cut(s)	72, 379
SinI	GGWCC	2 cut(s)	253, 467
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	3 cut(s)	623, 762, 918
SmoI	CTYRAG	3 cut(s)	623, 762, 918
Sse9I	AATT	3 cut(s)	109, 225, 657
SsiI	CCGC	2 cut(s)	99, 837
SspMI	CTAG	2 cut(s)	291, 398
SstI	GAGCTC	2 cut(s)	886, 1082
StyD4I	CCNGG	4 cut(s)	120, 139, 175, 1105
StyI	CCWWGG	2 cut(s)	783, 869
TaaI	ACNGT	1 cut(s)	703
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	1 cut(s)	318
TasI	AATT	3 cut(s)	109, 225, 657
TfiI	GAWTC	2 cut(s)	694, 965
TscAI	CASTG	1 cut(s)	706
TseI	GCWGC	1 cut(s)	1112
TspDTI	ATGAA	5 cut(s)	210, 238, 598, 929, 1004
TspGWI	ACGGA	1 cut(s)	874
TspRI	CASTG	1 cut(s)	706
Tth111I	GACNNNGTC	1 cut(s)	792
Van91I	CCANNNNNTGG	2 cut(s)	250, 460
VpaK11BI	GGWCC	2 cut(s)	253, 467
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	1 cut(s)	421
XcmI	CCANNNNNNNNNTGG	2 cut(s)	64, 461
XspI	CTAG	2 cut(s)	291, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.