Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Reverse (-)

881523 .. 886035

Gene Structure 4513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G012400.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTCTCCTGGAGGTCGCTTCTGTGAGGATGTGGCTGAGTCTCGTATGGCATTTGCAGATTCTGATGTTGCAACTTCCACTGGTGATGTAAGGACTTCCCCTTTCAGAAAAGCTGCCCCTGGTTTGCTTGGAATTCCTGGAATGCCATCAAACCACAATGTGCATGACCTACTCGAGTGTCCTGTTTGCATGAATTTAATGTGTCCTCCAATTCACCAGTGTCCAAATGGCCACACTCTCTGCTCGAGCTGTAAGGTTAGAGTGCACAACTGTTGCCCCACGTGTCGCAATGAACTTGGAAATATAAGGTGCTTGGCACTGGAGAAAGTAGCAGAGTCGCTGGATCTTCCTTGTAGATACCAAATTTATGGTTGCCAAGATATATTCCCATACTACAGCAAGCTAAAGCATGAGAAAATCTGTAAATATCGTCCATACAACTGCCCTTATGCTGGAGCTGATTGTTCTGTCACAGGAGATATCCAACTCCTTATGATGCATCTTAAAAATGATCACAAGGTTGACATGCATGACGGATGTACTTTCAACCATAGATATGTTAAATCCAATCCCCAAGAAGTTGACAATGCTACATGGATGTTGACCATTTTTAACTGTTTTGGGCGCCAGTTTTGCTTGCATTTTGAGGCTTTCCACATTGGAACTGCACCTGTTTACATGGCCTTCCTTCGGTTCATGGGTGATGATGATGAGGCAAAGCAATTCACTTATAGTCTCGAAGTTAGCGGCAGTGGCAGAAAGCTTATATGGCAAGGAATTCCTAGGAGCATCCGAGATAGCCACAGAAAAGTTCGTGACAGTCAAGATGGACTAATCATTCCGAGGAACTTAGCACTCTTCTTCTCCGGTGGTAATAGGCAGGAACTGAAGCTGAAAGTCGCTGGTCGTATATGGAAAGAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901564 GO:1902115 GO:1902584 GO:2000070 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

309

Amino Acids

34.86

Weight (kDa)

8.22

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	624
AciI	CCGC	1 cut(s)	747
AclWI	GGATC	1 cut(s)	351
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	4 cut(s)	132, 193, 363, 777
AcuI	CTGAAG	1 cut(s)	908
AcvI	CACGTG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	625
AdeI	CACNNNGTG	1 cut(s)	160
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	452, 690
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	547
AjnI	CCWGG	3 cut(s)	7, 118, 136
AluBI	AGCT	6 cut(s)	113, 249, 403, 458, 763, 892
AluI	AGCT	6 cut(s)	113, 249, 403, 458, 763, 892
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	3 cut(s)	9, 45, 740
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	351
AlwNI	CAGNNNCTG	2 cut(s)	62, 886
Ama87I	CYCGRG	2 cut(s)	173, 244
AoxI	GGCC	2 cut(s)	229, 681
ApaLI	GTGCAC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	4 cut(s)	132, 193, 363, 777
AspA2I	CCTAGG	1 cut(s)	782
AspLEI	GCGC	1 cut(s)	627
AsuHPI	GGTGA	3 cut(s)	95, 206, 713
AvaI	CYCGRG	2 cut(s)	173, 244
AvrII	CCTAGG	1 cut(s)	782
BaeGI	GKGCMC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	624
BbrPI	CACGTG	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	2 cut(s)	154, 821
BciT130I	CCWGG	3 cut(s)	9, 120, 138
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	3 cut(s)	9, 45, 740
BfaI	CTAG	1 cut(s)	783
BfmI	CTRYAG	1 cut(s)	394
BfoI	RGCGCY	1 cut(s)	628
BisI	GCNGC	2 cut(s)	114, 748
BlnI	CCTAGG	1 cut(s)	782
BlsI	GCNGC	2 cut(s)	115, 749
Bme1390I	CCNGG	3 cut(s)	9, 120, 138
BmeT110I	CYCGRG	2 cut(s)	173, 244
BmiI	GGNNCC	1 cut(s)	626
BmrFI	CCNGG	3 cut(s)	9, 120, 138
BmsI	GCATC	3 cut(s)	486, 508, 798
BpmI	CTGGAG	3 cut(s)	30, 341, 474
BsaAI	YACGTR	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	625
BsaJI	CCNNGG	3 cut(s)	118, 782, 842
BsaWI	WCCGGW	1 cut(s)	866
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 690
Bse1I	ACTGG	4 cut(s)	85, 217, 324, 628
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	3 cut(s)	9, 120, 138
BseDI	CCNNGG	3 cut(s)	118, 782, 842
BseGI	GGATG	4 cut(s)	34, 542, 603, 789
BseLI	CCNNNNNNNGG	2 cut(s)	452, 690
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	4 cut(s)	85, 217, 324, 628
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	2 cut(s)	231, 683
BshNI	GGYRCC	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	2 cut(s)	173, 244
BsiSI	CCGG	1 cut(s)	867
BslI	CCNNNNNNNGG	2 cut(s)	452, 690
BsmAI	GTCTC	3 cut(s)	9, 45, 740
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	231, 683
BsoBI	CYCGRG	2 cut(s)	173, 244
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	343, 511
BspACI	CCGC	1 cut(s)	747
BspANI	GGCC	2 cut(s)	231, 683
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	626
BspPI	GGATC	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	4 cut(s)	85, 217, 324, 628
BssECI	CCNNGG	3 cut(s)	118, 782, 842
BssMI	GATC	2 cut(s)	343, 511
BssNI	GRCGYC	1 cut(s)	625
BssT1I	CCWWGG	1 cut(s)	782
Bst2UI	CCWGG	3 cut(s)	9, 120, 138
Bst4CI	ACNGT	3 cut(s)	272, 617, 821
Bst6I	CTCTTC	1 cut(s)	863
BstACI	GRCGYC	1 cut(s)	625
BstBAI	YACGTR	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	401, 638
BstDEI	CTNAG	2 cut(s)	36, 850
BstF5I	GGATG	4 cut(s)	34, 542, 603, 789
BstH2I	RGCGCY	1 cut(s)	628
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	2 cut(s)	346, 514
BstMAI	GTCTC	3 cut(s)	9, 45, 740
BstMBI	GATC	2 cut(s)	343, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	633, 753, 769
BstNI	CCWGG	3 cut(s)	9, 120, 138
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	3 cut(s)	7, 118, 136
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	231, 683
BtsCI	GGATG	4 cut(s)	34, 542, 603, 789
BtsI	GCAGTG	1 cut(s)	757
BtsIMutI	CAGTG	5 cut(s)	78, 224, 317, 757, 922
Cac8I	GCNNGC	2 cut(s)	401, 638
CaiI	CAGNNNCTG	2 cut(s)	62, 886
CfoI	GCGC	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	8 cut(s)	164, 190, 410, 526, 530, 594, 679, 697
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	2 cut(s)	36, 850
DinI	GGCGCC	1 cut(s)	626
DpnI	GATC	2 cut(s)	345, 513
DpnII	GATC	2 cut(s)	343, 511
DraIII	CACNNNGTG	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	863
EarI	CTCTTC	1 cut(s)	863
Eco130I	CCWWGG	1 cut(s)	782
Eco32I	GATATC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	908
Eco72I	CACGTG	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	173, 244
EcoRI	GAATTC	2 cut(s)	132, 777
EcoRII	CCWGG	3 cut(s)	7, 118, 136
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	782
EcoT22I	ATGCAT	2 cut(s)	501, 531
EgeI	GGCGCC	1 cut(s)	626
EheI	GGCGCC	1 cut(s)	626
ErhI	CCWWGG	1 cut(s)	782
FaeI	CATG	8 cut(s)	167, 193, 413, 529, 533, 597, 682, 700
FatI	CATG	8 cut(s)	163, 189, 409, 525, 529, 593, 678, 696
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	114, 748
FokI	GGATG	4 cut(s)	41, 549, 610, 776
Fsp4HI	GCNGC	2 cut(s)	114, 748
FspBI	CTAG	1 cut(s)	783
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	2 cut(s)	114, 748
GsuI	CTGGAG	3 cut(s)	30, 341, 474
HaeII	RGCGCY	1 cut(s)	628
HaeIII	GGCC	2 cut(s)	231, 683
HapII	CCGG	1 cut(s)	867
HhaI	GCGC	1 cut(s)	627
Hin1I	GRCGYC	1 cut(s)	625
Hin1II	CATG	8 cut(s)	167, 193, 413, 529, 533, 597, 682, 700
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	3 cut(s)	523, 583, 603
HindII	GTYRAC	3 cut(s)	523, 583, 603
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	3 cut(s)	38, 59, 335
HpaII	CCGG	1 cut(s)	867
HphI	GGTGA	3 cut(s)	95, 206, 713
Hpy166II	GTNNAC	5 cut(s)	265, 523, 583, 603, 676
Hpy188I	TCNGA	4 cut(s)	64, 107, 794, 843
Hpy188III	TCNNGA	3 cut(s)	737, 815, 824
Hpy8I	GTNNAC	5 cut(s)	265, 523, 583, 603, 676
HpyAV	CCTTC	2 cut(s)	694, 698
HpyCH4III	ACNGT	3 cut(s)	272, 617, 821
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	9 cut(s)	56, 71, 163, 189, 265, 499, 529, 640, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	633, 753, 769
HpyF3I	CTNAG	2 cut(s)	36, 850
HpySE526I	ACGT	1 cut(s)	281
Hsp92I	GRCGYC	1 cut(s)	625
Hsp92II	CATG	8 cut(s)	167, 193, 413, 529, 533, 597, 682, 700
HspAI	GCGC	1 cut(s)	625
KasI	GGCGCC	1 cut(s)	624
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	343, 511
LmnI	GCTCC	2 cut(s)	455, 786
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	3 cut(s)	486, 508, 798
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	2 cut(s)	469, 815
MalI	GATC	2 cut(s)	345, 513
MboI	GATC	2 cut(s)	343, 511
MboII	GAAGA	3 cut(s)	338, 850, 853
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	6 cut(s)	132, 193, 210, 363, 722, 777
MluNI	TGGCCA	1 cut(s)	231
Mly113I	GGCGCC	1 cut(s)	625
MlyI	GAGTC	2 cut(s)	47, 344
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	6 cut(s)	5, 19, 216, 640, 706, 837
Mox20I	TGGCCA	1 cut(s)	231
Mph1103I	ATGCAT	2 cut(s)	501, 531
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	4 cut(s)	197, 504, 561, 612
MslI	CAYNNNNRTG	1 cut(s)	555
Msp20I	TGGCCA	1 cut(s)	231
MspI	CCGG	1 cut(s)	867
MspR9I	CCNGG	3 cut(s)	9, 120, 138
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	3 cut(s)	9, 120, 138
MwoI	GCNNNNNNNGC	3 cut(s)	633, 753, 769
NarI	GGCGCC	1 cut(s)	625
NdeII	GATC	2 cut(s)	343, 511
NlaIII	CATG	8 cut(s)	167, 193, 413, 529, 533, 597, 682, 700
NlaIV	GGNNCC	1 cut(s)	626
NmuCI	GTSAC	2 cut(s)	469, 815
NsiI	ATGCAT	2 cut(s)	501, 531
NspI	RCATGY	1 cut(s)	529
PaeR7I	CTCGAG	2 cut(s)	173, 244
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	59
PfoI	TCCNGGA	2 cut(s)	7, 136
PkrI	GCNGC	2 cut(s)	115, 749
PleI	GAGTC	2 cut(s)	46, 343
PluTI	GGCGCC	1 cut(s)	628
PmaCI	CACGTG	1 cut(s)	282
PmlI	CACGTG	1 cut(s)	282
PpsI	GAGTC	2 cut(s)	46, 343
Ppu21I	YACGTR	1 cut(s)	282
Psp6I	CCWGG	3 cut(s)	7, 118, 136
PspCI	CACGTG	1 cut(s)	282
PspGI	CCWGG	3 cut(s)	7, 118, 136
PspN4I	GGNNCC	1 cut(s)	626
PspXI	VCTCGAGB	2 cut(s)	173, 244
PstNI	CAGNNNCTG	2 cut(s)	62, 886
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
RseI	CAYNNNNRTG	1 cut(s)	555
SaqAI	TTAA	4 cut(s)	197, 504, 561, 612
SatI	GCNGC	2 cut(s)	114, 748
Sau3AI	GATC	2 cut(s)	343, 511
SchI	GAGTC	2 cut(s)	47, 344
ScrFI	CCNGG	3 cut(s)	9, 120, 138
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	3 cut(s)	486, 508, 798
SfcI	CTRYAG	1 cut(s)	394
SfoI	GGCGCC	1 cut(s)	626
Sfr274I	CTCGAG	2 cut(s)	173, 244
SlaI	CTCGAG	2 cut(s)	173, 244
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	173, 244
SmoI	CTYRAG	2 cut(s)	173, 244
Sse9I	AATT	6 cut(s)	132, 193, 210, 363, 722, 777
SsiI	CCGC	1 cut(s)	747
SspDI	GGCGCC	1 cut(s)	624
SspMI	CTAG	1 cut(s)	783
StyD4I	CCNGG	3 cut(s)	7, 118, 136
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	3 cut(s)	272, 617, 821
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	3 cut(s)	174, 245, 738
TasI	AATT	6 cut(s)	132, 193, 210, 363, 722, 777
TatI	WGTACW	1 cut(s)	539
TauI	GCSGC	1 cut(s)	750
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	4 cut(s)	197, 504, 561, 612
Tru9I	TTAA	4 cut(s)	197, 504, 561, 612
TscAI	CASTG	4 cut(s)	85, 224, 324, 757
TseFI	GTSAC	2 cut(s)	469, 815
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	2 cut(s)	469, 815
TspDTI	ATGAA	3 cut(s)	206, 306, 685
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	4 cut(s)	85, 224, 324, 757
VneI	GTGCAC	1 cut(s)	263
XapI	RAATTY	4 cut(s)	132, 193, 363, 777
XceI	RCATGY	1 cut(s)	529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XhoI	CTCGAG	2 cut(s)	173, 244
XmaJI	CCTAGG	1 cut(s)	782
XspI	CTAG	1 cut(s)	783
Zsp2I	ATGCAT	2 cut(s)	501, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.