Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Forward (+)

24933928 .. 24938505

Gene Structure 4578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCAATGGCAAAGTCAGAGACAGTTGGTGCACTTAATAAGCCTACCCCTGGTTTGGGTGGAAAACATGGTCTATATTCAACCAATGGTGTGCATGAGTTACTTGAGTGCCCTGTCTGCACAAGTTTGATGTACCCTCCTATTCATCAGGGTATGAGGTTTAATGGGTTTGATTCAGGTCATTGGAAAGTAGCATTCAACTTTAGGTTGCTGGTGGTGGAGTGGATGGTTGAAGGAGGGGATATGTTTATGCAGTTGTGTCCTAATGGCCACACATTATGTTCTGACTGCAAGGTAAGGGTGCAGAATTGTTGCCCAACTTGCCGCTATGAGCTTGGAAATATCAGGTGTTTGGCTTTGGAGAAGGTTGCTGAATCATTGGAACTTCCATGCATATACCAGAGTTTAGGCTGTCATGATATTTTCCCATACTATAGCAAGCTGAAGCATGAGCAACATTGTCGATTTCGTCTATACAATTGCCCTTATGCTGGATCTGAGTGCTCTGTTACAGGCGATATCCCAACTCTTGTTAATCATCTTAAGGATGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAACCATAGATATGTTAAATCAAACCCACATGAAGTTGAAAATGCAACTTGGATGCTAACCGTCTTTAATTGTTTTGGAAGACAGTTTTGTTTGCACTTTGAGGCTTTCCAGATGGGAATGGCTCCTGTCTACATGGCTTTTTTACGATTCATGGGCGATGATACTGAGGCGAAGAAATTCAGCTATAGTTTGGAGGTTGGTGGAAATGGTCGCAAGTTAATATGGCAAGGAATTCCCAGGAGTATCCGTGACAGTCATAGAAAAGTTCGTGACAGTCAGGATGGACTCATAATACAGAGAAATATGGCGCTCTACTTTTCTGGTGGGGATAGGCAAGAACTGAAGTTGAGGATTACTGGCCGGATATGGAAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0043170 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902115 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

321

Amino Acids

36.7

Weight (kDa)

7.85

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_ZnF	PF21361	122 - 197	7.6e-30	Sina, zinc finger
Sina_TRAF	PF03145	217 - 314	9.9e-35	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	714
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	1 cut(s)	502
AcoI	YGGCCR	2 cut(s)	268, 943
AcsI	RAATTY	2 cut(s)	761, 816
AcuI	CTGAAG	2 cut(s)	464, 947
AfaI	GTAC	2 cut(s)	134, 580
AfiI	CCNNNNNNNGG	4 cut(s)	50, 55, 56, 491
AflII	CTTAAG	1 cut(s)	542
AgsI	TTSAA	5 cut(s)	81, 199, 233, 586, 623
AjnI	CCWGG	2 cut(s)	49, 821
AluBI	AGCT	3 cut(s)	334, 442, 768
AluI	AGCT	3 cut(s)	334, 442, 768
Alw21I	GWGCWC	2 cut(s)	34, 506
Alw26I	GTCTC	1 cut(s)	14
Alw44I	GTGCAC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	502
AoxI	GGCC	2 cut(s)	268, 943
ApaLI	GTGCAC	1 cut(s)	30
ApoI	RAATTY	2 cut(s)	761, 816
Asp700I	GAANNNNTTC	1 cut(s)	761
AspLEI	GCGC	1 cut(s)	895
BaeGI	GKGCMC	2 cut(s)	34, 113
BalI	TGGCCA	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	670
Bbv12I	GWGCWC	2 cut(s)	34, 506
BccI	CCATC	4 cut(s)	220, 566, 691, 860
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	2 cut(s)	51, 823
BciVI	GTATCC	1 cut(s)	839
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	433, 769
BfoI	RGCGCY	1 cut(s)	896
BfrI	CTTAAG	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	839
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
Bme1390I	CCNGG	2 cut(s)	51, 823
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	51, 823
BmsI	GCATC	1 cut(s)	627
BpiI	GAAGAC	1 cut(s)	670
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	49, 821
BsaXI	ACNNNNNCTCC	2 cut(s)	817, 847
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 55, 56, 491
Bse1I	ACTGG	1 cut(s)	946
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	51, 823
BseDI	CCNNGG	2 cut(s)	49, 821
BseGI	GGATG	4 cut(s)	231, 553, 642, 871
BseLI	CCNNNNNNNGG	4 cut(s)	50, 55, 56, 491
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	489, 741
BseNI	ACTGG	1 cut(s)	946
BseSI	GKGCMC	2 cut(s)	34, 113
BsgI	GTGCAG	2 cut(s)	103, 323
BshFI	GGCC	2 cut(s)	270, 945
BsiHKAI	GWGCWC	2 cut(s)	34, 506
BsiSI	CCGG	1 cut(s)	946
BslI	CCNNNNNNNGG	4 cut(s)	50, 55, 56, 491
BsmAI	GTCTC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	270, 945
Bsp1286I	GDGCHC	3 cut(s)	34, 113, 506
Bsp143I	GATC	2 cut(s)	494, 550
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	270, 945
BspCNI	CTCAG	2 cut(s)	490, 742
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	708
BspPI	GGATC	1 cut(s)	502
BspTI	CTTAAG	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	946
BssECI	CCNNGG	2 cut(s)	49, 821
BssMI	GATC	2 cut(s)	494, 550
Bst2UI	CCWGG	2 cut(s)	51, 823
Bst4CI	ACNGT	5 cut(s)	25, 646, 669, 839, 860
BstAFI	CTTAAG	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	2 cut(s)	498, 750
BstF5I	GGATG	4 cut(s)	231, 553, 642, 871
BstH2I	RGCGCY	1 cut(s)	896
BstHHI	GCGC	1 cut(s)	895
BstKTI	GATC	2 cut(s)	497, 553
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	494, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 321
BstNI	CCWGG	2 cut(s)	51, 823
BstNSI	RCATGY	1 cut(s)	568
BstSCI	CCNGG	2 cut(s)	49, 821
BstSFI	CTRYAG	2 cut(s)	433, 769
BstSLI	GKGCMC	2 cut(s)	34, 113
BstV2I	GAAGAC	1 cut(s)	670
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	839
BsuRI	GGCC	2 cut(s)	270, 945
BtgZI	GCGATG	1 cut(s)	756
BtsCI	GGATG	4 cut(s)	231, 553, 642, 871
Cac8I	GCNNGC	1 cut(s)	440
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	1 cut(s)	895
Csp6I	GTAC	2 cut(s)	133, 579
CviQI	GTAC	2 cut(s)	133, 579
DdeI	CTNAG	2 cut(s)	498, 750
DpnI	GATC	2 cut(s)	496, 552
DpnII	GATC	2 cut(s)	494, 550
EaeI	YGGCCR	2 cut(s)	268, 943
Eco32I	GATATC	1 cut(s)	520
Eco57I	CTGAAG	2 cut(s)	464, 947
EcoRI	GAATTC	1 cut(s)	816
EcoRII	CCWGG	2 cut(s)	49, 821
EcoRV	GATATC	1 cut(s)	520
EcoT22I	ATGCAT	2 cut(s)	395, 570
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	4 cut(s)	238, 560, 649, 878
Fsp4HI	GCNGC	1 cut(s)	325
GlaI	GCGC	1 cut(s)	894
GluI	GCNGC	1 cut(s)	325
HaeII	RGCGCY	1 cut(s)	896
HaeIII	GGCC	2 cut(s)	270, 945
HapII	CCGG	1 cut(s)	946
HhaI	GCGC	1 cut(s)	895
Hin6I	GCGC	1 cut(s)	893
HinP1I	GCGC	1 cut(s)	893
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	4 cut(s)	173, 374, 732, 870
HpaII	CCGG	1 cut(s)	946
Hpy166II	GTNNAC	4 cut(s)	32, 562, 579, 715
Hpy188I	TCNGA	3 cut(s)	19, 286, 499
Hpy188III	TCNNGA	4 cut(s)	416, 694, 854, 863
Hpy8I	GTNNAC	4 cut(s)	32, 562, 579, 715
HpyAV	CCTTC	3 cut(s)	227, 358, 592
HpyCH4III	ACNGT	5 cut(s)	25, 646, 669, 839, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 321
HpyF3I	CTNAG	2 cut(s)	498, 750
HspAI	GCGC	1 cut(s)	893
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	494, 550
LmnI	GCTCC	1 cut(s)	712
LweI	GCATC	1 cut(s)	627
MaeIII	GTNAC	4 cut(s)	99, 508, 833, 854
MalI	GATC	2 cut(s)	496, 552
MboI	GATC	2 cut(s)	494, 550
MboII	GAAGA	2 cut(s)	675, 769
MfeI	CAATTG	1 cut(s)	478
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	3 cut(s)	34, 113, 506
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	5 cut(s)	307, 478, 652, 761, 816
MluNI	TGGCCA	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	864
MnlI	CCTC	7 cut(s)	147, 150, 230, 679, 745, 772, 927
Mox20I	TGGCCA	1 cut(s)	270
Mph1103I	ATGCAT	2 cut(s)	395, 570
MroXI	GAANNNNTTC	1 cut(s)	761
MscI	TGGCCA	1 cut(s)	270
MseI	TTAA	7 cut(s)	36, 162, 534, 543, 600, 651, 803
MslI	CAYNNNNRTG	1 cut(s)	594
Msp20I	TGGCCA	1 cut(s)	270
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	1 cut(s)	946
MspR9I	CCNGG	2 cut(s)	51, 823
MunI	CAATTG	1 cut(s)	478
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	2 cut(s)	51, 823
MwoI	GCNNNNNNNGC	2 cut(s)	117, 321
NdeII	GATC	2 cut(s)	494, 550
NlaIV	GGNNCC	1 cut(s)	708
NmuCI	GTSAC	2 cut(s)	833, 854
NsiI	ATGCAT	2 cut(s)	395, 570
NspI	RCATGY	1 cut(s)	568
PagI	TCATGA	1 cut(s)	415
PctI	GAATGC	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	3 cut(s)	173, 374, 732
PkrI	GCNGC	1 cut(s)	326
PleI	GAGTC	1 cut(s)	864
PpsI	GAGTC	1 cut(s)	864
Psp6I	CCWGG	2 cut(s)	49, 821
PspGI	CCWGG	2 cut(s)	49, 821
PspN4I	GGNNCC	1 cut(s)	708
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	2 cut(s)	134, 580
RsaNI	GTAC	2 cut(s)	133, 579
RseI	CAYNNNNRTG	1 cut(s)	594
SaqAI	TTAA	7 cut(s)	36, 162, 534, 543, 600, 651, 803
SatI	GCNGC	1 cut(s)	325
Sau3AI	GATC	2 cut(s)	494, 550
SchI	GAGTC	1 cut(s)	864
ScrFI	CCNGG	2 cut(s)	51, 823
SduI	GDGCHC	3 cut(s)	34, 113, 506
SfaNI	GCATC	1 cut(s)	627
SfcI	CTRYAG	2 cut(s)	433, 769
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	2 cut(s)	104, 542
SmoI	CTYRAG	2 cut(s)	104, 542
Sse9I	AATT	5 cut(s)	307, 478, 652, 761, 816
SsiI	CCGC	1 cut(s)	325
StyD4I	CCNGG	2 cut(s)	49, 821
TaaI	ACNGT	5 cut(s)	25, 646, 669, 839, 860
TaqI	TCGA	1 cut(s)	463
TasI	AATT	5 cut(s)	307, 478, 652, 761, 816
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	3 cut(s)	173, 374, 732
Tru1I	TTAA	7 cut(s)	36, 162, 534, 543, 600, 651, 803
Tru9I	TTAA	7 cut(s)	36, 162, 534, 543, 600, 651, 803
TseFI	GTSAC	2 cut(s)	833, 854
Tsp45I	GTSAC	2 cut(s)	833, 854
TspDTI	ATGAA	3 cut(s)	134, 630, 724
TspGWI	ACGGA	1 cut(s)	821
Vha464I	CTTAAG	1 cut(s)	542
VneI	GTGCAC	1 cut(s)	30
XapI	RAATTY	2 cut(s)	761, 816
XceI	RCATGY	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	714
XmnI	GAANNNNTTC	1 cut(s)	761
Zsp2I	ATGCAT	2 cut(s)	395, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.