Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Reverse (-)

25052497 .. 25057201

Gene Structure 4705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCAATGGCAAAGTCAGAGACAGCTGGTGCACTTAATAAGCCTACCCCTGGTTTGGGTGGAAAACATGGTCTATATTCAACCAATGGTGTGCATGAGTTACTTGAGTGCCCTGTCTGCACAAGTTTAATGTACCCTCCTATTCATCAGTGTCCTAATGGCCACACATTATGTTCTGACTGCAAGGTAAGGGTGCAGAATTGTTGCCCAACTTGCCGCTATGAGCTTGGAAATATCAGGTGTTTGGCTTTGGAGAAGGTTGCTGAATCATTGGAACTCCCATGCATATACCAGAGTTTAGGCTGTCATGATATTTTCCCATACTATAGCAAGCTGAAGCATGAGCAACATTGTCGATTTCGTCTATACAATTGCCCTTATGCTGGATCTGAGTGCTCTGTTACAGGCGATATCCCAACTCTTGTTAATCATCTTAAGGATGATCACAAGGTCGACATGCATGATGGGTGTACCTTCAACCATAGATATGTTAAATCAAACCCACATGAAGTTGAAAATGCAACTTGGATGCTAACTGTCTTTAATTGTTTTGGAAGACAGTTTTGTTTGCACTTTGAGGCTTTCCAGATGGGAATGGCTCCAGTCTACATGGCTTTTTTACGATTCATGGGCGATGATACTGAGGCGAAGAAATTCAGCTATAGTTTGGAGGTTGGTGGAAATGGTCGTAAGTTAATATGGCAAGGAATTCCCAGGAGTATCCGTGACAGTCATAGAAAAGTTCGTGACAGCCAGGATGGACTCATAATACAGAGAAATATGGCGCTCTACTTTTCTGGTGGGGATAGGCAAGAACTGAAGTTGAGGATTACTGGCCGGATATGGAAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0043170 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902115 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

285

Amino Acids

32.44

Weight (kDa)

8.09

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	37 - 72	7.2e-12	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	86 - 161	6.1e-30	Sina, zinc finger
Sina_TRAF	PF03145	181 - 278	7.7e-35	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	453, 606
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	2 cut(s)	160, 835
AcsI	RAATTY	2 cut(s)	653, 708
AcuI	CTGAAG	2 cut(s)	356, 839
AfaI	GTAC	2 cut(s)	134, 472
AfiI	CCNNNNNNNGG	4 cut(s)	50, 55, 56, 383
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	81, 478, 515
AjnI	CCWGG	3 cut(s)	49, 713, 753
AluBI	AGCT	4 cut(s)	26, 226, 334, 660
AluI	AGCT	4 cut(s)	26, 226, 334, 660
Alw21I	GWGCWC	2 cut(s)	34, 398
Alw26I	GTCTC	1 cut(s)	14
Alw44I	GTGCAC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	2 cut(s)	160, 835
ApaLI	GTGCAC	1 cut(s)	30
ApoI	RAATTY	2 cut(s)	653, 708
Asp700I	GAANNNNTTC	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	787
BaeGI	GKGCMC	2 cut(s)	34, 113
BalI	TGGCCA	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	562
Bbv12I	GWGCWC	2 cut(s)	34, 398
BccI	CCATC	3 cut(s)	458, 583, 752
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	3 cut(s)	51, 715, 755
BciVI	GTATCC	1 cut(s)	731
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	325, 661
BfoI	RGCGCY	1 cut(s)	788
BfrI	CTTAAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	731
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	3 cut(s)	51, 715, 755
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	3 cut(s)	51, 715, 755
BmsI	GCATC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	562
BpmI	CTGGAG	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	49, 713
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 55, 56, 383
Bse1I	ACTGG	2 cut(s)	602, 838
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	51, 715, 755
BseDI	CCNNGG	2 cut(s)	49, 713
BseGI	GGATG	3 cut(s)	445, 534, 763
BseLI	CCNNNNNNNGG	4 cut(s)	50, 55, 56, 383
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	381, 633
BseNI	ACTGG	2 cut(s)	602, 838
BseSI	GKGCMC	2 cut(s)	34, 113
BsgI	GTGCAG	2 cut(s)	103, 215
BshFI	GGCC	2 cut(s)	162, 837
BsiHKAI	GWGCWC	2 cut(s)	34, 398
BsiSI	CCGG	1 cut(s)	838
BslI	CCNNNNNNNGG	4 cut(s)	50, 55, 56, 383
BsmAI	GTCTC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	162, 837
Bsp1286I	GDGCHC	3 cut(s)	34, 113, 398
Bsp143I	GATC	2 cut(s)	386, 442
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	2 cut(s)	162, 837
BspCNI	CTCAG	2 cut(s)	382, 634
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	1 cut(s)	394
BspTI	CTTAAG	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	602, 838
BssECI	CCNNGG	2 cut(s)	49, 713
BssMI	GATC	2 cut(s)	386, 442
Bst2UI	CCWGG	3 cut(s)	51, 715, 755
Bst4CI	ACNGT	3 cut(s)	538, 561, 731
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	390, 642
BstF5I	GGATG	3 cut(s)	445, 534, 763
BstH2I	RGCGCY	1 cut(s)	788
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	2 cut(s)	389, 445
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	386, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 213
BstNI	CCWGG	3 cut(s)	51, 715, 755
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	3 cut(s)	49, 713, 753
BstSFI	CTRYAG	2 cut(s)	325, 661
BstSLI	GKGCMC	2 cut(s)	34, 113
BstV2I	GAAGAC	1 cut(s)	562
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuI	GTATCC	1 cut(s)	731
BsuRI	GGCC	2 cut(s)	162, 837
BtgZI	GCGATG	1 cut(s)	648
BtsCI	GGATG	3 cut(s)	445, 534, 763
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	332
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	787
Csp6I	GTAC	2 cut(s)	133, 471
CviQI	GTAC	2 cut(s)	133, 471
DdeI	CTNAG	2 cut(s)	390, 642
DpnI	GATC	2 cut(s)	388, 444
DpnII	GATC	2 cut(s)	386, 442
EaeI	YGGCCR	2 cut(s)	160, 835
Eco32I	GATATC	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	356, 839
EcoRI	GAATTC	1 cut(s)	708
EcoRII	CCWGG	3 cut(s)	49, 713, 753
EcoRV	GATATC	1 cut(s)	412
EcoT22I	ATGCAT	2 cut(s)	287, 462
FbaI	TGATCA	1 cut(s)	442
FblI	GTMKAC	2 cut(s)	453, 606
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	3 cut(s)	452, 541, 770
Fsp4HI	GCNGC	1 cut(s)	217
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	585
HaeII	RGCGCY	1 cut(s)	788
HaeIII	GGCC	2 cut(s)	162, 837
HapII	CCGG	1 cut(s)	838
HhaI	GCGC	1 cut(s)	787
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	3 cut(s)	266, 624, 762
HpaII	CCGG	1 cut(s)	838
Hpy166II	GTNNAC	4 cut(s)	32, 454, 471, 607
Hpy188I	TCNGA	3 cut(s)	19, 178, 391
Hpy188III	TCNNGA	3 cut(s)	308, 586, 746
Hpy8I	GTNNAC	4 cut(s)	32, 454, 471, 607
HpyAV	CCTTC	2 cut(s)	250, 484
HpyCH4III	ACNGT	3 cut(s)	538, 561, 731
HpyCH4V	TGCA	9 cut(s)	32, 94, 120, 183, 196, 285, 460, 521, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 213
HpyF3I	CTNAG	2 cut(s)	390, 642
HspAI	GCGC	1 cut(s)	785
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	386, 442
LmnI	GCTCC	1 cut(s)	604
LweI	GCATC	1 cut(s)	519
MaeIII	GTNAC	4 cut(s)	99, 400, 725, 746
MalI	GATC	2 cut(s)	388, 444
MboI	GATC	2 cut(s)	386, 442
MboII	GAAGA	2 cut(s)	567, 661
MfeI	CAATTG	1 cut(s)	370
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	3 cut(s)	34, 113, 398
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	5 cut(s)	199, 370, 544, 653, 708
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	756
MnlI	CCTC	5 cut(s)	147, 571, 637, 664, 819
Mox20I	TGGCCA	1 cut(s)	162
Mph1103I	ATGCAT	2 cut(s)	287, 462
MroXI	GAANNNNTTC	1 cut(s)	653
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	7 cut(s)	36, 128, 426, 435, 492, 543, 695
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	26
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	1 cut(s)	838
MspR9I	CCNGG	3 cut(s)	51, 715, 755
MunI	CAATTG	1 cut(s)	370
MvaI	CCWGG	3 cut(s)	51, 715, 755
MwoI	GCNNNNNNNGC	2 cut(s)	117, 213
NdeII	GATC	2 cut(s)	386, 442
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	725, 746
NsiI	ATGCAT	2 cut(s)	287, 462
NspI	RCATGY	1 cut(s)	460
PagI	TCATGA	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	266, 624
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	756
Psp6I	CCWGG	3 cut(s)	49, 713, 753
PspGI	CCWGG	3 cut(s)	49, 713, 753
PspN4I	GGNNCC	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	134, 472
RsaNI	GTAC	2 cut(s)	133, 471
RseI	CAYNNNNRTG	1 cut(s)	486
SalI	GTCGAC	1 cut(s)	452
SaqAI	TTAA	7 cut(s)	36, 128, 426, 435, 492, 543, 695
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	386, 442
SchI	GAGTC	1 cut(s)	756
ScrFI	CCNGG	3 cut(s)	51, 715, 755
SduI	GDGCHC	3 cut(s)	34, 113, 398
SfaNI	GCATC	1 cut(s)	519
SfcI	CTRYAG	2 cut(s)	325, 661
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	2 cut(s)	104, 434
SmoI	CTYRAG	2 cut(s)	104, 434
Sse9I	AATT	5 cut(s)	199, 370, 544, 653, 708
SsiI	CCGC	1 cut(s)	217
StyD4I	CCNGG	3 cut(s)	49, 713, 753
TaaI	ACNGT	3 cut(s)	538, 561, 731
TaqI	TCGA	2 cut(s)	355, 453
TasI	AATT	5 cut(s)	199, 370, 544, 653, 708
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	266, 624
Tru1I	TTAA	7 cut(s)	36, 128, 426, 435, 492, 543, 695
Tru9I	TTAA	7 cut(s)	36, 128, 426, 435, 492, 543, 695
TscAI	CASTG	1 cut(s)	155
TseFI	GTSAC	2 cut(s)	725, 746
Tsp45I	GTSAC	2 cut(s)	725, 746
TspDTI	ATGAA	3 cut(s)	134, 522, 616
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	1 cut(s)	155
Vha464I	CTTAAG	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	30
XapI	RAATTY	2 cut(s)	653, 708
XceI	RCATGY	1 cut(s)	460
XmiI	GTMKAC	2 cut(s)	453, 606
XmnI	GAANNNNTTC	1 cut(s)	653
Zsp2I	ATGCAT	2 cut(s)	287, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.