Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Forward (+)

919096 .. 923194

Gene Structure 4099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1012000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTCTCCTGGAGGTCGCTTCTTTGAGGATGTGGCCGAGTCTCATGTGGCATTTGCAGATTCTGATGTTGCAACTTCCACTGCTGATCTAAGGGCTTCTCCATTCAGAAAAGCGGCCCCTGGTTTGTTTGGAAATCCTGGAATGCCACCAAATAGTAATGTGCACGACCTACTCGAGTGTCCTGTTTGCATGAATTTAATGTGTCCTCCAATTCATCAGTGTCCAAATGGCCATACTCTCTGCTCGAGCTGTAAGGTTAGAGTGCACAACTGTTGCCCCACTTGCCGGAATGAACTTGGAAATATAAGGTGCTTGGCACTGGAGAAAGTAGCAGAGTCGCTGGATCTTCCTTGTAGACACCAAATTTATGGTTGCCAAGATATATTCCCATACTACAGCAAGCTGAAGCACGAGAAAACCTGTAAATATCGCCCGTACAGCTGCCCTTATGCTGGAGCTGAATGTTCTGTCACTGGAGATATCCAATTCCTTATGATGCATCTTAAAAATGATCACAAGGTCGACATGCATGACGGGAGTACTTTCAACCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGTTGACAATTTTCAACTGTTTTGGCCGTCAGTTTTGCTTGCATTTTGAGGCTTTCCACATTGGAACTGCACCTGTTTACATGGCCTTCCTAAGGTTTATGGGTGACGATGATGAGGCGAAGCAATTCACTTATAGTCTTGAAGTTAGTGGCAGTGGCAGAAAGCTTACATGGCAAGGAATTCCCCGGAGTATCCGAGATAGCCACCGAAAGGTCCGTGACAGTCAAGACGGATTAATCATTCAGAGAAACCTAGCACTCTTCTTCTCGGGTGGCAATAGGCAGGAGTTGAAGCTGAAAGTCGCCGGACGTATATGGAAAGAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901564 GO:1902115 GO:1902584 GO:2000070 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

309

Amino Acids

34.85

Weight (kDa)

8.1

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	60 - 95	9.3e-11	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	109 - 184	8.4e-31	Sina, zinc finger
Sina_TRAF	PF03145	204 - 300	1.8e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	355, 522
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	351
AcoI	YGGCCR	3 cut(s)	33, 229, 622
AcsI	RAATTY	3 cut(s)	193, 363, 777
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	2 cut(s)	437, 541
AfiI	CCNNNNNNNGG	4 cut(s)	285, 452, 690, 808
AgsI	TTSAA	5 cut(s)	547, 584, 613, 740, 889
AjnI	CCWGG	3 cut(s)	7, 118, 136
AluBI	AGCT	6 cut(s)	249, 403, 441, 458, 763, 892
AluI	AGCT	6 cut(s)	249, 403, 441, 458, 763, 892
Alw21I	GWGCWC	2 cut(s)	165, 267
Alw26I	GTCTC	2 cut(s)	9, 45
Alw44I	GTGCAC	2 cut(s)	161, 263
AlwI	GGATC	1 cut(s)	351
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	3 cut(s)	173, 244, 865
AoxI	GGCC	5 cut(s)	33, 114, 229, 622, 681
ApaLI	GTGCAC	2 cut(s)	161, 263
ApeKI	GCWGC	1 cut(s)	441
ApoI	RAATTY	3 cut(s)	193, 363, 777
AseI	ATTAAT	1 cut(s)	833
Asp700I	GAANNNNTTC	1 cut(s)	722
AspS9I	GGNCC	2 cut(s)	115, 811
AsuC2I	CCSGG	1 cut(s)	784
AsuHPI	GGTGA	1 cut(s)	713
AvaI	CYCGRG	3 cut(s)	173, 244, 865
AvaII	GGWCC	1 cut(s)	811
AxyI	CCTNAGG	1 cut(s)	689
BaeGI	GKGCMC	2 cut(s)	165, 267
BalI	TGGCCA	1 cut(s)	231
BauI	CACGAG	1 cut(s)	410
Bbv12I	GWGCWC	2 cut(s)	165, 267
BbvI	GCAGC	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	609
BciT130I	CCWGG	3 cut(s)	9, 120, 138
BciVI	GTATCC	1 cut(s)	800
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	2 cut(s)	9, 45
BfaI	CTAG	1 cut(s)	851
BfmI	CTRYAG	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	800
BisI	GCNGC	2 cut(s)	114, 442
BlsI	GCNGC	2 cut(s)	115, 443
BmcAI	AGTACT	1 cut(s)	541
Bme1390I	CCNGG	4 cut(s)	9, 120, 138, 784
Bme18I	GGWCC	1 cut(s)	811
BmeT110I	CYCGRG	3 cut(s)	173, 244, 865
BmgT120I	GGNCC	2 cut(s)	115, 811
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	4 cut(s)	9, 120, 138, 784
BmsI	GCATC	2 cut(s)	486, 508
BpmI	CTGGAG	4 cut(s)	30, 341, 474, 495
BpuMI	CCSGG	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	118, 782
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 452, 690, 808
Bse1I	ACTGG	2 cut(s)	324, 478
Bse21I	CCTNAGG	1 cut(s)	689
BseBI	CCWGG	3 cut(s)	9, 120, 138
BseDI	CCNNGG	2 cut(s)	118, 782
BseGI	GGATG	2 cut(s)	34, 603
BseLI	CCNNNNNNNGG	4 cut(s)	285, 452, 690, 808
BseNI	ACTGG	2 cut(s)	324, 478
BseSI	GKGCMC	2 cut(s)	165, 267
BseXI	GCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	5 cut(s)	35, 116, 231, 624, 683
BsiHKAI	GWGCWC	2 cut(s)	165, 267
BsiHKCI	CYCGRG	3 cut(s)	173, 244, 865
BsiSI	CCGG	3 cut(s)	286, 784, 903
BslI	CCNNNNNNNGG	4 cut(s)	285, 452, 690, 808
BsmAI	GTCTC	2 cut(s)	9, 45
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	5 cut(s)	35, 116, 231, 624, 683
BsoBI	CYCGRG	3 cut(s)	173, 244, 865
Bsp1286I	GDGCHC	2 cut(s)	165, 267
Bsp143I	GATC	3 cut(s)	85, 343, 511
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	5 cut(s)	35, 116, 231, 624, 683
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	324, 478
BssECI	CCNNGG	2 cut(s)	118, 782
BssMI	GATC	3 cut(s)	85, 343, 511
BssSI	CACGAG	1 cut(s)	410
Bst2BI	CACGAG	1 cut(s)	410
Bst2UI	CCWGG	3 cut(s)	9, 120, 138
Bst4CI	ACNGT	3 cut(s)	272, 617, 821
Bst6I	CTCTTC	1 cut(s)	863
BstC8I	GCNNGC	2 cut(s)	401, 638
BstDEI	CTNAG	2 cut(s)	89, 689
BstENI	CCTNNNNNAGG	1 cut(s)	688
BstF5I	GGATG	2 cut(s)	34, 603
BstKTI	GATC	3 cut(s)	88, 346, 514
BstMAI	GTCTC	2 cut(s)	9, 45
BstMBI	GATC	3 cut(s)	85, 343, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	282, 438, 769
BstNI	CCWGG	3 cut(s)	9, 120, 138
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	4 cut(s)	7, 118, 136, 782
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	2 cut(s)	165, 267
BstV1I	GCAGC	1 cut(s)	428
BstX2I	RGATCY	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	343
Bsu36I	CCTNAGG	1 cut(s)	689
BsuI	GTATCC	1 cut(s)	800
BsuRI	GGCC	5 cut(s)	35, 116, 231, 624, 683
BtsCI	GGATG	2 cut(s)	34, 603
BtsI	GCAGTG	2 cut(s)	78, 757
BtsIMutI	CAGTG	6 cut(s)	78, 224, 317, 471, 757, 922
Cac8I	GCNNGC	2 cut(s)	401, 638
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	115, 811
Csp6I	GTAC	2 cut(s)	436, 540
CviAII	CATG	7 cut(s)	44, 190, 526, 530, 594, 679, 768
CviQI	GTAC	2 cut(s)	436, 540
DdeI	CTNAG	2 cut(s)	89, 689
DpnI	GATC	3 cut(s)	87, 345, 513
DpnII	GATC	3 cut(s)	85, 343, 511
EaeI	YGGCCR	3 cut(s)	33, 229, 622
Eam1104I	CTCTTC	1 cut(s)	863
EarI	CTCTTC	1 cut(s)	863
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	811
Eco57I	CTGAAG	1 cut(s)	425
Eco81I	CCTNAGG	1 cut(s)	689
Eco88I	CYCGRG	3 cut(s)	173, 244, 865
EcoNI	CCTNNNNNAGG	1 cut(s)	688
EcoRI	GAATTC	1 cut(s)	777
EcoRII	CCWGG	3 cut(s)	7, 118, 136
EcoRV	GATATC	1 cut(s)	481
EcoT22I	ATGCAT	2 cut(s)	501, 531
FaeI	CATG	7 cut(s)	47, 193, 529, 533, 597, 682, 771
FatI	CATG	7 cut(s)	43, 189, 525, 529, 593, 678, 767
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	2 cut(s)	355, 522
Fnu4HI	GCNGC	2 cut(s)	114, 442
FokI	GGATG	2 cut(s)	41, 610
Fsp4HI	GCNGC	2 cut(s)	114, 442
FspBI	CTAG	1 cut(s)	851
GluI	GCNGC	2 cut(s)	114, 442
GsuI	CTGGAG	4 cut(s)	30, 341, 474, 495
HaeIII	GGCC	5 cut(s)	35, 116, 231, 624, 683
HapII	CCGG	3 cut(s)	286, 784, 903
Hin1II	CATG	7 cut(s)	47, 193, 529, 533, 597, 682, 771
HincII	GTYRAC	2 cut(s)	523, 603
HindII	GTYRAC	2 cut(s)	523, 603
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	3 cut(s)	38, 59, 335
HpaII	CCGG	3 cut(s)	286, 784, 903
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	6 cut(s)	163, 265, 356, 523, 603, 676
Hpy188I	TCNGA	4 cut(s)	64, 107, 794, 843
Hpy188III	TCNNGA	2 cut(s)	737, 824
Hpy8I	GTNNAC	6 cut(s)	163, 265, 356, 523, 603, 676
HpyAV	CCTTC	1 cut(s)	694
HpyCH4III	ACNGT	3 cut(s)	272, 617, 821
HpyCH4IV	ACGT	1 cut(s)	907
HpyCH4V	TGCA	9 cut(s)	56, 71, 163, 189, 265, 499, 529, 640, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	282, 438, 769
HpyF3I	CTNAG	2 cut(s)	89, 689
HpySE526I	ACGT	1 cut(s)	907
Hsp92II	CATG	7 cut(s)	47, 193, 529, 533, 597, 682, 771
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	85, 343, 511
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	2 cut(s)	486, 508
MaeI	CTAG	1 cut(s)	851
MaeII	ACGT	1 cut(s)	907
MaeIII	GTNAC	3 cut(s)	469, 701, 815
MalI	GATC	3 cut(s)	87, 345, 513
MboI	GATC	3 cut(s)	85, 343, 511
MboII	GAAGA	3 cut(s)	338, 850, 853
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	165, 267
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	7 cut(s)	193, 210, 363, 485, 606, 722, 777
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	47, 344
MnlI	CCTC	5 cut(s)	5, 19, 216, 640, 706
Mox20I	TGGCCA	1 cut(s)	231
Mph1103I	ATGCAT	2 cut(s)	501, 531
MroXI	GAANNNNTTC	1 cut(s)	722
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	3 cut(s)	197, 504, 833
MslI	CAYNNNNRTG	1 cut(s)	555
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	3 cut(s)	286, 784, 903
MspR9I	CCNGG	4 cut(s)	9, 120, 138, 784
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	3 cut(s)	9, 120, 138
MwoI	GCNNNNNNNGC	3 cut(s)	282, 438, 769
NciI	CCSGG	1 cut(s)	784
NdeII	GATC	3 cut(s)	85, 343, 511
NlaIII	CATG	7 cut(s)	47, 193, 529, 533, 597, 682, 771
NlaIV	GGNNCC	1 cut(s)	117
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	3 cut(s)	469, 701, 815
NsiI	ATGCAT	2 cut(s)	501, 531
NspI	RCATGY	1 cut(s)	529
PaeR7I	CTCGAG	2 cut(s)	173, 244
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	1 cut(s)	59
PfoI	TCCNGGA	2 cut(s)	7, 136
PkrI	GCNGC	2 cut(s)	115, 443
PleI	GAGTC	2 cut(s)	46, 343
PpsI	GAGTC	2 cut(s)	46, 343
PshBI	ATTAAT	1 cut(s)	833
Psp6I	CCWGG	3 cut(s)	7, 118, 136
PspGI	CCWGG	3 cut(s)	7, 118, 136
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	2 cut(s)	115, 811
PspXI	VCTCGAGB	2 cut(s)	173, 244
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	441
RsaI	GTAC	2 cut(s)	437, 541
RsaNI	GTAC	2 cut(s)	436, 540
RseI	CAYNNNNRTG	1 cut(s)	555
SalI	GTCGAC	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	197, 504, 833
SatI	GCNGC	2 cut(s)	114, 442
Sau3AI	GATC	3 cut(s)	85, 343, 511
Sau96I	GGNCC	2 cut(s)	115, 811
ScaI	AGTACT	1 cut(s)	541
SchI	GAGTC	2 cut(s)	47, 344
ScrFI	CCNGG	4 cut(s)	9, 120, 138, 784
SduI	GDGCHC	2 cut(s)	165, 267
SfaNI	GCATC	2 cut(s)	486, 508
SfcI	CTRYAG	1 cut(s)	394
Sfr274I	CTCGAG	2 cut(s)	173, 244
SinI	GGWCC	1 cut(s)	811
SlaI	CTCGAG	2 cut(s)	173, 244
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	173, 244
SmoI	CTYRAG	2 cut(s)	173, 244
Sse9I	AATT	7 cut(s)	193, 210, 363, 485, 606, 722, 777
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	851
StyD4I	CCNGG	4 cut(s)	7, 118, 136, 782
TaaI	ACNGT	3 cut(s)	272, 617, 821
TaiI	ACGT	1 cut(s)	910
TaqI	TCGA	3 cut(s)	174, 245, 522
TasI	AATT	7 cut(s)	193, 210, 363, 485, 606, 722, 777
TatI	WGTACW	1 cut(s)	539
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	3 cut(s)	197, 504, 833
Tru9I	TTAA	3 cut(s)	197, 504, 833
TscAI	CASTG	5 cut(s)	85, 224, 324, 478, 757
TseFI	GTSAC	3 cut(s)	469, 701, 815
TseI	GCWGC	1 cut(s)	441
Tsp45I	GTSAC	3 cut(s)	469, 701, 815
TspDTI	ATGAA	3 cut(s)	203, 206, 306
TspGWI	ACGGA	2 cut(s)	803, 843
TspRI	CASTG	5 cut(s)	85, 224, 324, 478, 757
VneI	GTGCAC	2 cut(s)	161, 263
VpaK11BI	GGWCC	1 cut(s)	811
VspI	ATTAAT	1 cut(s)	833
XagI	CCTNNNNNAGG	1 cut(s)	688
XapI	RAATTY	3 cut(s)	193, 363, 777
XceI	RCATGY	1 cut(s)	529
XhoI	CTCGAG	2 cut(s)	173, 244
XmiI	GTMKAC	2 cut(s)	355, 522
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	1 cut(s)	851
ZrmI	AGTACT	1 cut(s)	541
Zsp2I	ATGCAT	2 cut(s)	501, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.