E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 81 |
| AccII | CGCG | 1 cut(s) | 201 |
| AciI | CCGC | 2 cut(s) | 156, 308 |
| AcoI | YGGCCR | 1 cut(s) | 28 |
| AcsI | RAATTY | 1 cut(s) | 183 |
| AcuI | CTGAAG | 1 cut(s) | 314 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 214 |
| AluBI | AGCT | 3 cut(s) | 169, 292, 298 |
| AluI | AGCT | 3 cut(s) | 169, 292, 298 |
| Alw26I | GTCTC | 1 cut(s) | 146 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 77, 292 |
| AoxI | GGCC | 4 cut(s) | 28, 87, 120, 310 |
| ApoI | RAATTY | 1 cut(s) | 183 |
| AspS9I | GGNCC | 1 cut(s) | 310 |
| AsuHPI | GGTGA | 1 cut(s) | 119 |
| BccI | CCATC | 1 cut(s) | 227 |
| BceAI | ACGGC | 2 cut(s) | 15, 297 |
| BclI | TGATCA | 1 cut(s) | 240 |
| BcoDI | GTCTC | 1 cut(s) | 146 |
| BmgT120I | GGNCC | 1 cut(s) | 310 |
| BsaJI | CCNNGG | 1 cut(s) | 188 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 214 |
| BseDI | CCNNGG | 1 cut(s) | 188 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 214 |
| BseMII | CTCAG | 1 cut(s) | 285 |
| BseRI | GAGGAG | 1 cut(s) | 205 |
| Bsh1236I | CGCG | 1 cut(s) | 201 |
| BshFI | GGCC | 4 cut(s) | 30, 89, 122, 312 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 214 |
| BsmAI | GTCTC | 1 cut(s) | 146 |
| BsmI | GAATGC | 1 cut(s) | 56 |
| BsnI | GGCC | 4 cut(s) | 30, 89, 122, 312 |
| Bsp143I | GATC | 2 cut(s) | 12, 240 |
| Bsp68I | TCGCGA | 1 cut(s) | 201 |
| BspACI | CCGC | 2 cut(s) | 156, 308 |
| BspANI | GGCC | 4 cut(s) | 30, 89, 122, 312 |
| BspCNI | CTCAG | 1 cut(s) | 284 |
| BspFNI | CGCG | 1 cut(s) | 201 |
| BssECI | CCNNGG | 1 cut(s) | 188 |
| BssMI | GATC | 2 cut(s) | 12, 240 |
| BssNAI | GTATAC | 1 cut(s) | 82 |
| Bst1107I | GTATAC | 1 cut(s) | 82 |
| Bst4CI | ACNGT | 3 cut(s) | 23, 140, 227 |
| BstC8I | GCNNGC | 2 cut(s) | 44, 310 |
| BstDEI | CTNAG | 2 cut(s) | 95, 271 |
| BstFNI | CGCG | 1 cut(s) | 201 |
| BstKTI | GATC | 2 cut(s) | 15, 243 |
| BstMAI | GTCTC | 1 cut(s) | 146 |
| BstMBI | GATC | 2 cut(s) | 12, 240 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 175 |
| BstUI | CGCG | 1 cut(s) | 201 |
| BstZ17I | GTATAC | 1 cut(s) | 82 |
| BsuRI | GGCC | 4 cut(s) | 30, 89, 122, 312 |
| BtsIMutI | CAGTG | 2 cut(s) | 8, 328 |
| BtuMI | TCGCGA | 1 cut(s) | 201 |
| Cac8I | GCNNGC | 2 cut(s) | 44, 310 |
| CaiI | CAGNNNCTG | 2 cut(s) | 77, 292 |
| Cfr13I | GGNCC | 1 cut(s) | 310 |
| CviAII | CATG | 3 cut(s) | 85, 103, 174 |
| CviJI | RGCY | 8 cut(s) | 30, 89, 122, 169, 207, 292, 298, 312 |
| CviKI_1 | RGCY | 8 cut(s) | 30, 89, 122, 169, 207, 292, 298, 312 |
| DdeI | CTNAG | 2 cut(s) | 95, 271 |
| DpnI | GATC | 2 cut(s) | 14, 242 |
| DpnII | GATC | 2 cut(s) | 12, 240 |
| EaeI | YGGCCR | 1 cut(s) | 28 |
| Eco57I | CTGAAG | 1 cut(s) | 314 |
| EcoRI | GAATTC | 1 cut(s) | 183 |
| FaeI | CATG | 3 cut(s) | 88, 106, 177 |
| FaiI | YATR | 6 cut(s) | 82, 86, 104, 175, 317, 319 |
| FatI | CATG | 3 cut(s) | 84, 102, 173 |
| FauI | CCCGC | 1 cut(s) | 301 |
| FbaI | TGATCA | 1 cut(s) | 240 |
| FblI | GTMKAC | 1 cut(s) | 81 |
| HaeIII | GGCC | 4 cut(s) | 30, 89, 122, 312 |
| Hin1II | CATG | 3 cut(s) | 88, 106, 177 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HinfI | GANTC | 1 cut(s) | 99 |
| HphI | GGTGA | 1 cut(s) | 119 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 82 |
| Hpy188I | TCNGA | 2 cut(s) | 189, 249 |
| Hpy188III | TCNNGA | 4 cut(s) | 143, 200, 221, 230 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 82 |
| HpyAV | CCTTC | 1 cut(s) | 100 |
| HpyCH4III | ACNGT | 3 cut(s) | 23, 140, 227 |
| HpyCH4V | TGCA | 1 cut(s) | 46 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 175 |
| HpyF3I | CTNAG | 2 cut(s) | 95, 271 |
| Hsp92II | CATG | 3 cut(s) | 88, 106, 177 |
| Ksp22I | TGATCA | 1 cut(s) | 240 |
| Kzo9I | GATC | 2 cut(s) | 12, 240 |
| LmnI | GCTCC | 1 cut(s) | 289 |
| LpnPI | CCDG | 3 cut(s) | 90, 258, 272 |
| MaeIII | GTNAC | 1 cut(s) | 221 |
| MalI | GATC | 2 cut(s) | 14, 242 |
| MboI | GATC | 2 cut(s) | 12, 240 |
| MluCI | AATT | 2 cut(s) | 128, 183 |
| MnlI | CCTC | 4 cut(s) | 46, 112, 183, 243 |
| MseI | TTAA | 1 cut(s) | 18 |
| Mva1269I | GAATGC | 1 cut(s) | 56 |
| MvnI | CGCG | 1 cut(s) | 201 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 175 |
| NdeII | GATC | 2 cut(s) | 12, 240 |
| NlaIII | CATG | 3 cut(s) | 88, 106, 177 |
| NmuCI | GTSAC | 1 cut(s) | 221 |
| NruI | TCGCGA | 1 cut(s) | 201 |
| PctI | GAATGC | 1 cut(s) | 56 |
| PfeI | GAWTC | 1 cut(s) | 99 |
| PspPI | GGNCC | 1 cut(s) | 310 |
| PstNI | CAGNNNCTG | 2 cut(s) | 77, 292 |
| RruI | TCGCGA | 1 cut(s) | 201 |
| SaqAI | TTAA | 1 cut(s) | 18 |
| Sau3AI | GATC | 2 cut(s) | 12, 240 |
| Sau96I | GGNCC | 1 cut(s) | 310 |
| SetI | ASST | 6 cut(s) | 79, 171, 219, 277, 294, 300 |
| Sse9I | AATT | 2 cut(s) | 128, 183 |
| SsiI | CCGC | 2 cut(s) | 156, 308 |
| TaaI | ACNGT | 3 cut(s) | 23, 140, 227 |
| TaqI | TCGA | 1 cut(s) | 144 |
| TasI | AATT | 2 cut(s) | 128, 183 |
| TfiI | GAWTC | 1 cut(s) | 99 |
| Tru1I | TTAA | 1 cut(s) | 18 |
| Tru9I | TTAA | 1 cut(s) | 18 |
| TscAI | CASTG | 1 cut(s) | 15 |
| TseFI | GTSAC | 1 cut(s) | 221 |
| Tsp45I | GTSAC | 1 cut(s) | 221 |
| TspDTI | ATGAA | 1 cut(s) | 91 |
| TspRI | CASTG | 1 cut(s) | 15 |
| XapI | RAATTY | 1 cut(s) | 183 |
| XmiI | GTMKAC | 1 cut(s) | 81 |