Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Reverse (-)

5470040 .. 5474302

Gene Structure 4263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1054300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCAATCGCTAAGTCGGAGGCAGGTAGCAATAGTATGCTAAGTAAGACTACCCCTGGTTTGGGTGGAAAGCATGGTCTGTATTCAACAAATGGTGTGCATGAGTTACTTGAGTGCCCTGTCTGCACGAATTTGATGTACCCTCCTATTCATCAGTGTCCTAATGGCCACACGCTATGTTCAGACTGCAAGATAAGGGTGCACAATTGTTGCCCCACTTGTCGCTATGAGCTTGGAGATATAAGGTGTTTGGCTTTGGAGAAAGTTGCTGAATCGTTGGAACTTCCATGCCGATACCAGAGTTTAGGCTGTCATGATATTTTTCCGTACTACAGCAAGCTCAAACATGAGCAACACTGTCGATTTCGTCTATACAACTGCCCTTATGCTGGATCTGAGTGCTCTGTTACAGGTGATATCCCCACTCTCGTTGGGCATCTTAAGGAGGATCACAAGGTTGACATGCATGATGGGTGCACCTTCAACCATAGATATGTTAAAGCAAACCCAAATGAAGTTGAAAATGCAACTTGGATGCTTACTGTCTTCAATTGTTTCGGAAGACAGTTCTGTTTGCACTTTGAGGCCTTCCAATTAGGAATGGCTCCGGTCTACATGGCTTTTTTACGATTCATGGGTGATGATATTGAAGCTAAGAAGTTCAGCTATAGTTTGGAAGTTGGTGCAAATGGCCGTAAGCTAATATGGCAGGGGATCCCTAGGAGTATTCGTGACAGTCATGGAAAAGTTCGGGACAGCCAGGATGGACTCATTATTCAGAGGAACCTGGCTCTCTATTTCTCAGGCGGGGATAGGCAAGAACTAAAGTTGAGGATTACTGGCCGTATATGGAAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0043170 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902115 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

288

Amino Acids

32.55

Weight (kDa)

7.85

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	39 - 74	8.8e-12	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	88 - 163	7.8e-30	Sina, zinc finger
Sina_TRAF	PF03145	183 - 280	6e-33	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	612
AciI	CCGC	1 cut(s)	807
AclWI	GGATC	4 cut(s)	400, 456, 709, 722
AcoI	YGGCCR	3 cut(s)	166, 691, 841
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	2 cut(s)	140, 329
AfiI	CCNNNNNNNGG	3 cut(s)	61, 62, 389
AflII	CTTAAG	1 cut(s)	440
AgsI	TTSAA	5 cut(s)	87, 484, 521, 550, 650
AjnI	CCWGG	3 cut(s)	55, 759, 786
AluBI	AGCT	5 cut(s)	232, 340, 653, 666, 700
AluI	AGCT	5 cut(s)	232, 340, 653, 666, 700
Alw21I	GWGCWC	3 cut(s)	204, 404, 479
Alw44I	GTGCAC	2 cut(s)	200, 475
AlwI	GGATC	4 cut(s)	400, 456, 709, 722
AoxI	GGCC	4 cut(s)	166, 585, 691, 841
ApaLI	GTGCAC	2 cut(s)	200, 475
ApoI	RAATTY	1 cut(s)	130
AspA2I	CCTAGG	1 cut(s)	719
AsuHPI	GGTGA	2 cut(s)	425, 650
AvrII	CCTAGG	1 cut(s)	719
BaeGI	GKGCMC	3 cut(s)	119, 204, 479
BaeI	ACNNNNGTAYC	2 cut(s)	286, 319
BalI	TGGCCA	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	714
BbsI	GAAGAC	2 cut(s)	538, 568
Bbv12I	GWGCWC	3 cut(s)	204, 404, 479
BccI	CCATC	2 cut(s)	464, 758
BceAI	ACGGC	2 cut(s)	678, 828
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	3 cut(s)	57, 761, 788
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	2 cut(s)	331, 667
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	14
BlnI	CCTAGG	1 cut(s)	719
Bme1390I	CCNGG	3 cut(s)	57, 761, 788
BmiI	GGNNCC	3 cut(s)	606, 716, 785
BmrFI	CCNGG	3 cut(s)	57, 761, 788
BmsI	GCATC	2 cut(s)	445, 525
BpiI	GAAGAC	2 cut(s)	538, 568
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	55, 719
BsaWI	WCCGGW	1 cut(s)	607
BsaXI	ACNNNNNCTCC	2 cut(s)	715, 745
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 62, 389
Bse1I	ACTGG	1 cut(s)	844
BseBI	CCWGG	3 cut(s)	57, 761, 788
BseDI	CCNNGG	2 cut(s)	55, 719
BseGI	GGATG	2 cut(s)	540, 769
BseLI	CCNNNNNNNGG	3 cut(s)	61, 62, 389
BseMII	CTCAG	2 cut(s)	387, 816
BseNI	ACTGG	1 cut(s)	844
BseSI	GKGCMC	3 cut(s)	119, 204, 479
BsgI	GTGCAG	1 cut(s)	109
BshFI	GGCC	4 cut(s)	168, 587, 693, 843
BsiHKAI	GWGCWC	3 cut(s)	204, 404, 479
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	3 cut(s)	61, 62, 389
BsmFI	GGGAC	1 cut(s)	767
BsnI	GGCC	4 cut(s)	168, 587, 693, 843
Bsp1286I	GDGCHC	4 cut(s)	119, 204, 404, 479
Bsp143I	GATC	3 cut(s)	392, 448, 714
BspACI	CCGC	1 cut(s)	807
BspANI	GGCC	4 cut(s)	168, 587, 693, 843
BspCNI	CTCAG	2 cut(s)	388, 815
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	3 cut(s)	606, 716, 785
BspMI	ACCTGC	1 cut(s)	14
BspPI	GGATC	4 cut(s)	400, 456, 709, 722
BspTI	CTTAAG	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	844
BssECI	CCNNGG	2 cut(s)	55, 719
BssMI	GATC	3 cut(s)	392, 448, 714
BssT1I	CCWWGG	1 cut(s)	719
Bst2UI	CCWGG	3 cut(s)	57, 761, 788
Bst4CI	ACNGT	4 cut(s)	359, 544, 567, 737
BstAFI	CTTAAG	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	5 cut(s)	12, 41, 396, 654, 802
BstF5I	GGATG	2 cut(s)	540, 769
BstKTI	GATC	3 cut(s)	395, 451, 717
BstMBI	GATC	3 cut(s)	392, 448, 714
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 706
BstNI	CCWGG	3 cut(s)	57, 761, 788
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	3 cut(s)	55, 759, 786
BstSFI	CTRYAG	2 cut(s)	331, 667
BstSLI	GKGCMC	3 cut(s)	119, 204, 479
BstV2I	GAAGAC	2 cut(s)	538, 568
BstX2I	RGATCY	2 cut(s)	392, 714
BstYI	RGATCY	2 cut(s)	392, 714
BsuRI	GGCC	4 cut(s)	168, 587, 693, 843
BtsCI	GGATG	2 cut(s)	540, 769
BtsIMutI	CAGTG	2 cut(s)	161, 355
BveI	ACCTGC	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	338
CciI	TCATGA	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	139, 328
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviQI	GTAC	2 cut(s)	139, 328
DdeI	CTNAG	5 cut(s)	12, 41, 396, 654, 802
DpnI	GATC	3 cut(s)	394, 450, 716
DpnII	GATC	3 cut(s)	392, 448, 714
EaeI	YGGCCR	3 cut(s)	166, 691, 841
Eco130I	CCWWGG	1 cut(s)	719
Eco147I	AGGCCT	1 cut(s)	587
Eco32I	GATATC	1 cut(s)	418
EcoRII	CCWGG	3 cut(s)	55, 759, 786
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	719
EcoT22I	ATGCAT	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	719
FaqI	GGGAC	1 cut(s)	767
FauI	CCCGC	1 cut(s)	800
FblI	GTMKAC	1 cut(s)	612
FokI	GGATG	2 cut(s)	547, 776
FspBI	CTAG	1 cut(s)	720
HaeIII	GGCC	4 cut(s)	168, 587, 693, 843
HapII	CCGG	1 cut(s)	608
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	3 cut(s)	272, 630, 768
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	2 cut(s)	425, 650
Hpy166II	GTNNAC	4 cut(s)	202, 460, 477, 613
Hpy188I	TCNGA	5 cut(s)	19, 184, 397, 560, 780
Hpy188III	TCNNGA	3 cut(s)	314, 731, 752
Hpy8I	GTNNAC	4 cut(s)	202, 460, 477, 613
HpyAV	CCTTC	2 cut(s)	490, 598
HpyCH4III	ACNGT	4 cut(s)	359, 544, 567, 737
HpyCH4V	TGCA	9 cut(s)	100, 126, 189, 202, 466, 477, 527, 577, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 706
HpyF3I	CTNAG	5 cut(s)	12, 41, 396, 654, 802
Kzo9I	GATC	3 cut(s)	392, 448, 714
LmnI	GCTCC	1 cut(s)	610
LweI	GCATC	2 cut(s)	445, 525
MaeI	CTAG	1 cut(s)	720
MaeIII	GTNAC	3 cut(s)	105, 406, 731
MalI	GATC	3 cut(s)	394, 450, 716
MboI	GATC	3 cut(s)	392, 448, 714
MboII	GAAGA	2 cut(s)	538, 573
MfeI	CAATTG	2 cut(s)	205, 550
MflI	RGATCY	2 cut(s)	392, 714
MhlI	GDGCHC	4 cut(s)	119, 204, 404, 479
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	4 cut(s)	130, 205, 550, 593
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	762
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	13, 153, 439, 577, 774, 825
Mox20I	TGGCCA	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	2 cut(s)	441, 498
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	168
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	3 cut(s)	57, 761, 788
MunI	CAATTG	2 cut(s)	205, 550
MvaI	CCWGG	3 cut(s)	57, 761, 788
MwoI	GCNNNNNNNGC	2 cut(s)	123, 706
NdeII	GATC	3 cut(s)	392, 448, 714
NlaIV	GGNNCC	3 cut(s)	606, 716, 785
NmuCI	GTSAC	1 cut(s)	731
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	1 cut(s)	466
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	272, 630
PleI	GAGTC	1 cut(s)	762
PpsI	GAGTC	1 cut(s)	762
Psp6I	CCWGG	3 cut(s)	55, 759, 786
PspGI	CCWGG	3 cut(s)	55, 759, 786
PspN4I	GGNNCC	3 cut(s)	606, 716, 785
PsuI	RGATCY	2 cut(s)	392, 714
RsaI	GTAC	2 cut(s)	140, 329
RsaNI	GTAC	2 cut(s)	139, 328
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	2 cut(s)	441, 498
Sau3AI	GATC	3 cut(s)	392, 448, 714
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	3 cut(s)	57, 761, 788
SduI	GDGCHC	4 cut(s)	119, 204, 404, 479
SfaNI	GCATC	2 cut(s)	445, 525
SfcI	CTRYAG	2 cut(s)	331, 667
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	2 cut(s)	110, 440
SmoI	CTYRAG	2 cut(s)	110, 440
Sse9I	AATT	4 cut(s)	130, 205, 550, 593
SseBI	AGGCCT	1 cut(s)	587
SsiI	CCGC	1 cut(s)	807
SspMI	CTAG	1 cut(s)	720
StuI	AGGCCT	1 cut(s)	587
StyD4I	CCNGG	3 cut(s)	55, 759, 786
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	4 cut(s)	359, 544, 567, 737
TaqI	TCGA	1 cut(s)	361
TasI	AATT	4 cut(s)	130, 205, 550, 593
TfiI	GAWTC	2 cut(s)	272, 630
Tru1I	TTAA	2 cut(s)	441, 498
Tru9I	TTAA	2 cut(s)	441, 498
TscAI	CASTG	2 cut(s)	161, 362
TseFI	GTSAC	1 cut(s)	731
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	3 cut(s)	140, 528, 622
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	2 cut(s)	161, 362
Vha464I	CTTAAG	1 cut(s)	440
VneI	GTGCAC	2 cut(s)	200, 475
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	466
XmaJI	CCTAGG	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	1 cut(s)	720
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.