Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Forward (+)

21488433 .. 21491518

Gene Structure 3086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCTCCTGGAGGCAGTGCTTTGAAAGAAGTCATGGAATCTAATTCAACGGGAATGGATTACGAGGTTAAAACGGCAAAAGTGGAAGTTAATAATAACAAACCTACAAAGCCAGGGAGTGCAGGGATTGGAAAATATGGGATCCATTCGAACAATGGTGTTTACGAGCTTCTTGAATGTCCCGTCTGTACAAATTTAATGTACCCTCCAATTCATCAGTGTCCGAATGGCCACACATTATGTTCAAACTGCAAACTGAGAGTGCAGAACACATGCCCTACATGTCGCTACGAGCTTGGTAACATAAGATGCTTAGCTCTTGAGAAAGTTGCAGAGTCTTTGGAAGTTCCATGCCGGTACCAAAATTTGGGGTGTCATGACATTTTCCCTTACTACAGCAAGCTTAAGCACGAGCAGCATTGCAGGTTTAGGCCTTACACTTGCCCTTATGCTGGTTCTGAGTGTTCGGTTACAGGTGATATCCCTACACTTGTCGTTCATCTCAAAGATGATCATAAAGTCGATATGCATGACGGATGCACCTTCAACCACCGTTATGTAAAGTCAAATCCACATGAGGTCGAAAATGCTACATGGATGCTTACGGTGTTCAACTGTTTTGGGAGACAGTTCTGTTTACACTTCGAGGCGTTCCAGCTGGGAATGGCTCCAGTGTACATGGCATTCCTTCGTTTTATGGGAGATGAGAACGAGGCGAAGAAGTTCAGTTACAGCTTGGAAGTAGGAGCTCATGGACGGAAATTAACATGGCAAGGGATCCCTAGAAGCATCCGTGACAGTCACAGGAAAGTCCGGGACAGTCAAGACGGACTCATCATCCCAAGGAACCTCGCACTCTACTTCTCTGGAGGTGATAGGCAAGAACTCAAGTTGAGAGTGACTGGACGAATCTGGAAAGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0043170 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902115 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

308

Amino Acids

34.99

Weight (kDa)

8.27

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	60 - 95	1.7e-13	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	109 - 184	2.2e-30	Sina, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	414
Acc65I	GGTACC	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	357
AccB7I	CCANNNNNTGG	1 cut(s)	367
AclWI	GGATC	4 cut(s)	136, 149, 772, 785
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	2 cut(s)	193, 364
AfaI	GTAC	4 cut(s)	190, 203, 359, 677
AfiI	CCNNNNNNNGG	2 cut(s)	367, 452
AflII	CTTAAG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	6 cut(s)	25, 48, 176, 246, 547, 613
AjnI	CCWGG	2 cut(s)	7, 112
AluBI	AGCT	7 cut(s)	169, 295, 317, 403, 658, 735, 749
AluI	AGCT	7 cut(s)	169, 295, 317, 403, 658, 735, 749
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	619
AlwI	GGATC	4 cut(s)	136, 149, 772, 785
AoxI	GGCC	2 cut(s)	229, 431
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	2 cut(s)	193, 364
Asp700I	GAANNNNTTC	1 cut(s)	722
Asp718I	GGTACC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	815
AsuHPI	GGTGA	2 cut(s)	488, 884
AsuII	TTCGAA	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	231
BamHI	GGATCC	2 cut(s)	141, 777
BanI	GGYRCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	751
BarI	GAAGNNNNNNTAC	2 cut(s)	713, 745
BauI	CACGAG	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	1 cut(s)	427
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	2 cut(s)	9, 114
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	815
BcoDI	GTCTC	1 cut(s)	619
BfaI	CTAG	1 cut(s)	783
BfmI	CTRYAG	1 cut(s)	394
BfrI	CTTAAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	414
BisI	GCNGC	1 cut(s)	416
BlpI	GCTNAGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	3 cut(s)	9, 114, 815
BmiI	GGNNCC	6 cut(s)	6, 143, 359, 669, 779, 848
BmrFI	CCNGG	3 cut(s)	9, 114, 815
BmsI	GCATC	4 cut(s)	299, 527, 588, 798
BpmI	CTGGAG	3 cut(s)	30, 654, 888
Bpu1102I	GCTNAGC	1 cut(s)	313
Bpu14I	TTCGAA	1 cut(s)	149
BpuEI	CTTGAG	2 cut(s)	341, 872
BpuMI	CCSGG	1 cut(s)	815
BsaJI	CCNNGG	2 cut(s)	113, 842
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 452
Bse118I	RCCGGY	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	671, 907
Bse3DI	GCAATG	1 cut(s)	418
BseBI	CCWGG	2 cut(s)	9, 114
BseDI	CCNNGG	2 cut(s)	113, 842
BseGI	GGATG	4 cut(s)	542, 603, 789, 837
BseLI	CCNNNNNNNGG	2 cut(s)	367, 452
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	248, 450
BseNI	ACTGG	2 cut(s)	671, 907
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	1 cut(s)	658
BsgI	GTGCAG	2 cut(s)	141, 284
BshFI	GGCC	2 cut(s)	231, 433
BshNI	GGYRCC	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	751
BsiSI	CCGG	2 cut(s)	355, 814
BslFI	GGGAC	2 cut(s)	165, 830
BslI	CCNNNNNNNGG	2 cut(s)	367, 452
BsmAI	GTCTC	1 cut(s)	619
BsmFI	GGGAC	2 cut(s)	165, 830
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	2 cut(s)	231, 433
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp1407I	TGTACA	2 cut(s)	188, 675
Bsp143I	GATC	3 cut(s)	141, 511, 777
Bsp1720I	GCTNAGC	1 cut(s)	313
BspANI	GGCC	2 cut(s)	231, 433
BspCNI	CTCAG	2 cut(s)	249, 451
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	6 cut(s)	6, 143, 359, 669, 779, 848
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	4 cut(s)	136, 149, 772, 785
BspT104I	TTCGAA	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	357
BspTI	CTTAAG	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	354
BsrGI	TGTACA	2 cut(s)	188, 675
BsrI	ACTGG	2 cut(s)	671, 907
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	113, 842
BssMI	GATC	3 cut(s)	141, 511, 777
BssSI	CACGAG	1 cut(s)	410
BssT1I	CCWWGG	1 cut(s)	842
Bst2BI	CACGAG	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	9, 114
Bst4CI	ACNGT	6 cut(s)	554, 607, 617, 630, 800, 821
BstAFI	CTTAAG	1 cut(s)	404
BstAUI	TGTACA	2 cut(s)	188, 675
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	3 cut(s)	257, 313, 459
BstF5I	GGATG	4 cut(s)	542, 603, 789, 837
BstKTI	GATC	3 cut(s)	144, 514, 780
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	3 cut(s)	141, 511, 777
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	2 cut(s)	9, 114
BstNSI	RCATGY	2 cut(s)	276, 285
BstSCI	CCNGG	3 cut(s)	7, 112, 813
BstSFI	CTRYAG	1 cut(s)	394
BstV1I	GCAGC	1 cut(s)	427
BstX2I	RGATCY	2 cut(s)	141, 777
BstYI	RGATCY	2 cut(s)	141, 777
BsuRI	GGCC	2 cut(s)	231, 433
BtsCI	GGATG	4 cut(s)	542, 603, 789, 837
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	3 cut(s)	22, 224, 678
BveI	ACCTGC	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	401
CciI	TCATGA	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	354
Csp6I	GTAC	4 cut(s)	189, 202, 358, 676
CviQI	GTAC	4 cut(s)	189, 202, 358, 676
DdeI	CTNAG	3 cut(s)	257, 313, 459
DpnI	GATC	3 cut(s)	143, 513, 779
DpnII	GATC	3 cut(s)	141, 511, 777
EaeI	YGGCCR	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	749
Eco130I	CCWWGG	1 cut(s)	842
Eco147I	AGGCCT	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	751
Eco32I	GATATC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	749
EcoICRI	GAGCTC	1 cut(s)	749
EcoRII	CCWGG	2 cut(s)	7, 112
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	842
EcoT22I	ATGCAT	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	842
FaqI	GGGAC	2 cut(s)	165, 830
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	4 cut(s)	549, 610, 776, 824
FriOI	GRGCYC	1 cut(s)	751
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	1 cut(s)	783
GluI	GCNGC	1 cut(s)	416
GsaI	CCCAGC	1 cut(s)	662
GsuI	CTGGAG	3 cut(s)	30, 654, 888
HaeIII	GGCC	2 cut(s)	231, 433
HapII	CCGG	2 cut(s)	355, 814
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	4 cut(s)	38, 335, 831, 909
HpaII	CCGG	2 cut(s)	355, 814
HphI	GGTGA	2 cut(s)	488, 884
Hpy166II	GTNNAC	3 cut(s)	163, 638, 676
Hpy188I	TCNGA	2 cut(s)	225, 460
Hpy188III	TCNNGA	6 cut(s)	173, 320, 377, 824, 867, 913
Hpy8I	GTNNAC	3 cut(s)	163, 638, 676
HpyAV	CCTTC	2 cut(s)	553, 698
HpyCH4III	ACNGT	6 cut(s)	554, 607, 617, 630, 800, 821
HpyCH4V	TGCA	7 cut(s)	122, 252, 265, 332, 423, 529, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	3 cut(s)	257, 313, 459
KpnI	GGTACC	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	141, 511, 777
LmnI	GCTCC	3 cut(s)	10, 673, 746
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	4 cut(s)	299, 527, 588, 798
MaeI	CTAG	1 cut(s)	783
MaeIII	GTNAC	6 cut(s)	299, 469, 728, 794, 800, 898
MalI	GATC	3 cut(s)	143, 513, 779
MboI	GATC	3 cut(s)	141, 511, 777
MboII	GAAGA	1 cut(s)	730
MflI	RGATCY	2 cut(s)	141, 777
MhlI	GDGCHC	1 cut(s)	751
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	5 cut(s)	43, 193, 210, 364, 761
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	344, 825
MnlI	CCTC	9 cut(s)	5, 58, 216, 571, 640, 706, 860, 863, 913
Mox20I	TGGCCA	1 cut(s)	231
Mph1103I	ATGCAT	1 cut(s)	531
MroXI	GAANNNNTTC	1 cut(s)	722
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	5 cut(s)	69, 90, 197, 405, 764
MslI	CAYNNNNRTG	1 cut(s)	555
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	658
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	2 cut(s)	355, 814
MspR9I	CCNGG	3 cut(s)	9, 114, 815
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	2 cut(s)	9, 114
MwoI	GCNNNNNNNGC	1 cut(s)	415
NciI	CCSGG	1 cut(s)	815
NdeII	GATC	3 cut(s)	141, 511, 777
NlaIV	GGNNCC	6 cut(s)	6, 143, 359, 669, 779, 848
NmuCI	GTSAC	3 cut(s)	794, 800, 898
NsiI	ATGCAT	1 cut(s)	531
NspI	RCATGY	2 cut(s)	276, 285
NspV	TTCGAA	1 cut(s)	149
PagI	TCATGA	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	433
PciI	ACATGT	1 cut(s)	281
PctI	GAATGC	1 cut(s)	683
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	2 cut(s)	38, 909
PflMI	CCANNNNNTGG	1 cut(s)	367
PfoI	TCCNGGA	2 cut(s)	7, 813
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	2 cut(s)	343, 825
PpsI	GAGTC	2 cut(s)	343, 825
PscI	ACATGT	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	751
Psp6I	CCWGG	2 cut(s)	7, 112
PspFI	CCCAGC	1 cut(s)	658
PspGI	CCWGG	2 cut(s)	7, 112
PspN4I	GGNNCC	6 cut(s)	6, 143, 359, 669, 779, 848
PsuI	RGATCY	2 cut(s)	141, 777
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	4 cut(s)	190, 203, 359, 677
RsaNI	GTAC	4 cut(s)	189, 202, 358, 676
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	751
SaqAI	TTAA	5 cut(s)	69, 90, 197, 405, 764
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	3 cut(s)	141, 511, 777
SchI	GAGTC	2 cut(s)	344, 825
ScrFI	CCNGG	3 cut(s)	9, 114, 815
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	4 cut(s)	299, 527, 588, 798
SfcI	CTRYAG	1 cut(s)	394
SfuI	TTCGAA	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	3 cut(s)	320, 404, 887
SmoI	CTYRAG	3 cut(s)	320, 404, 887
Sse9I	AATT	5 cut(s)	43, 193, 210, 364, 761
SseBI	AGGCCT	1 cut(s)	433
SspMI	CTAG	1 cut(s)	783
SstI	GAGCTC	1 cut(s)	751
StuI	AGGCCT	1 cut(s)	433
StyD4I	CCNGG	3 cut(s)	7, 112, 813
StyI	CCWWGG	1 cut(s)	842
TaaI	ACNGT	6 cut(s)	554, 607, 617, 630, 800, 821
TaqI	TCGA	4 cut(s)	149, 522, 582, 645
TasI	AATT	5 cut(s)	43, 193, 210, 364, 761
TatI	WGTACW	2 cut(s)	188, 675
TfiI	GAWTC	2 cut(s)	38, 909
Tru1I	TTAA	5 cut(s)	69, 90, 197, 405, 764
Tru9I	TTAA	5 cut(s)	69, 90, 197, 405, 764
TscAI	CASTG	3 cut(s)	22, 224, 678
TseFI	GTSAC	3 cut(s)	794, 800, 898
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	3 cut(s)	794, 800, 898
TspDTI	ATGAA	2 cut(s)	203, 488
TspGWI	ACGGA	4 cut(s)	549, 772, 782, 843
TspRI	CASTG	3 cut(s)	22, 224, 678
Van91I	CCANNNNNTGG	1 cut(s)	367
Vha464I	CTTAAG	1 cut(s)	404
XapI	RAATTY	2 cut(s)	193, 364
XceI	RCATGY	2 cut(s)	276, 285
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	1 cut(s)	783
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.