Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Forward (+)

65201726 .. 65202928

Gene Structure 1203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0474800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGAAGCCAAGTCACTCTTTCTCCACTCCAAAACACTCCCACTCTGTTATACTTTCACAGATAGACCCAACATCTCTCTCAGGCATTTCAGCACACACCTTCAAGTCAATTCCATAAACCCCAATTCTCACTTCCACCAGAGCCTTAAACCCCTCAAAACCCCATCAAAATTATGTCTTTCACACAACCCACTATCCTTATCATCACCAACAAGAAGAACCCACTTGCTAAGTCCTCTCAAATGCTCCTACTCCAGCACCACAAGCCCAGAATCTCAGAACCCATTGCTAAAACCCTTCAAGAACCTCTCTTTTGATTCATTGAAAGCTACCCTTTTCAAATTAACCCCCTTTGATGTCATAAAGTGGTCTGGGATCTTATCAATTGCAATTGCAGCCACAAAATGGACCTCCAATTTGGTCTTCAGCCCCTTTTTCTGGATGTACTTCAGCTGGACTTGGATGTTCTGGCCATGGTTTCTGGCTGTTTCGGTAGGCCTTTACGGGTTATACTGTTTTCGAAAGCATTTACTTGGTGAAGCAAGCATATTTGAGCAGCTTGCTGTTGTTACCTCAGTGTTCACTTGGCTCACACTTGTCCCACCTGCCCATTTCAATGGCTTCCTTGAAGGTTGGCCATATGTGTTCTTCCTTGTGTACCATTATTTCTTTTTCTTCAATGTCAGTGTGAGAAAACGTTTGTATGGAGATTACTACGCTCGCCCACATGACCCCAAGTGGGATGTGAGCCCTCCGATGTGGTACCGGCTTTTGTTCAGTGTTGGGGTCATGGTTGGGCACTGGCTAGCTGCATTTGAAGGGCCAGAGCTGCACCGTATTCCTGGCGGTTGGAGCAATTTGGGTATTTGGGGCTTGATAGTTGTCACTATGCTAATGCAGTATAACTCAACATTGTATCTTGCAAAGTATTCCGAAAAGGTGGTGGTGCCAACGGCTGTTGTGCAGTTTGGGCCATACCGGTGGGTGCGCCATCCTATATATGCATCTACAATGCTTCTGTTTGCCACTTATTGTGTTGCCCTTCGAGCACCTTTGAGCTTGCTGTTCGTTGTAGCAGTTTGTGTGTTGTACTATGATCAGAAGGCGAAACTGGAGGAGGCTTTGATGATTGAGACTTTTGGGGAGAGGTATATGGAGTATGCAAGTAAGGTTAGATACAAGTTCATTCCTTTTATCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901564 GO:1902115 GO:1902584 GO:2000070 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

400

Amino Acids

46.5

Weight (kDa)

9.48

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEMT	PF04191	315 - 383	7.2e-07	Phospholipid methyltransferase
ICMT	PF04140	318 - 377	9.5e-06	Isoprenylcysteine carboxyl methyltransferase (ICMT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	613
Acc36I	ACCTGC	1 cut(s)	613
Acc65I	GGTACC	1 cut(s)	762
AccB1I	GGYRCC	2 cut(s)	762, 946
AccB7I	CCANNNNNTGG	1 cut(s)	405
AciI	CCGC	1 cut(s)	846
AclI	AACGTT	1 cut(s)	697
AclWI	GGATC	1 cut(s)	383
AcoI	YGGCCR	2 cut(s)	470, 635
AcuI	CTGAAG	2 cut(s)	409, 433
AfaI	GTAC	4 cut(s)	446, 659, 764, 1091
AfiI	CCNNNNNNNGG	3 cut(s)	405, 438, 739
AgeI	ACCGGT	1 cut(s)	978
AgsI	TTSAA	8 cut(s)	104, 301, 325, 340, 616, 629, 679, 818
AjnI	CCWGG	1 cut(s)	841
AjuI	GAANNNNNNNTTGG	4 cut(s)	116, 148, 407, 439
AluBI	AGCT	6 cut(s)	329, 453, 559, 809, 829, 1059
AluI	AGCT	6 cut(s)	329, 453, 559, 809, 829, 1059
Alw21I	GWGCWC	1 cut(s)	1051
Alw26I	GTCTC	1 cut(s)	1127
AlwI	GGATC	1 cut(s)	383
AoxI	GGCC	5 cut(s)	470, 496, 635, 821, 971
ApeKI	GCWGC	4 cut(s)	395, 556, 809, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
AsiGI	ACCGGT	1 cut(s)	978
Asp718I	GGTACC	1 cut(s)	762
AspLEI	GCGC	1 cut(s)	990
AspS9I	GGNCC	3 cut(s)	408, 821, 971
AsuHPI	GGTGA	2 cut(s)	198, 548
AsuII	TTCGAA	1 cut(s)	520
AsuNHI	GCTAGC	1 cut(s)	805
AvaII	GGWCC	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	801
BalI	TGGCCA	2 cut(s)	472, 637
BanI	GGYRCC	2 cut(s)	762, 946
BanII	GRGCYC	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	1051
BbvI	GCAGC	4 cut(s)	407, 568, 796, 816
BccI	CCATC	2 cut(s)	172, 999
BceAI	ACGGC	1 cut(s)	969
BciT130I	CCWGG	1 cut(s)	843
BclI	TGATCA	1 cut(s)	1096
BcoDI	GTCTC	1 cut(s)	1127
BfaI	CTAG	1 cut(s)	806
BfuAI	ACCTGC	1 cut(s)	613
BisI	GCNGC	4 cut(s)	396, 557, 810, 830
BlsI	GCNGC	4 cut(s)	397, 558, 811, 831
Bme1390I	CCNGG	1 cut(s)	843
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	3 cut(s)	408, 821, 971
BmiI	GGNNCC	2 cut(s)	764, 948
BmrFI	CCNGG	1 cut(s)	843
BmsI	GCATC	1 cut(s)	1013
BmtI	GCTAGC	1 cut(s)	809
BpiI	GAAGAC	1 cut(s)	415
BpmI	CTGGAG	2 cut(s)	238, 1133
Bpu14I	TTCGAA	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	473
BsaWI	WCCGGW	1 cut(s)	978
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	3 cut(s)	405, 438, 739
Bse118I	RCCGGY	2 cut(s)	765, 978
Bse1I	ACTGG	2 cut(s)	806, 1116
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	4 cut(s)	447, 468, 748, 991
BseLI	CCNNNNNNNGG	3 cut(s)	405, 438, 739
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	3 cut(s)	94, 290, 588
BseNI	ACTGG	2 cut(s)	806, 1116
BseRI	GAGGAG	1 cut(s)	1130
BseSI	GKGCMC	1 cut(s)	801
BseXI	GCAGC	4 cut(s)	407, 568, 796, 816
BsgI	GTGCAG	2 cut(s)	815, 983
BshFI	GGCC	5 cut(s)	472, 498, 637, 823, 973
BshNI	GGYRCC	2 cut(s)	762, 946
BshTI	ACCGGT	1 cut(s)	978
BsiHKAI	GWGCWC	1 cut(s)	1051
BsiSI	CCGG	2 cut(s)	766, 979
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	3 cut(s)	405, 438, 739
BsmAI	GTCTC	1 cut(s)	1127
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	5 cut(s)	472, 498, 637, 823, 973
Bsp119I	TTCGAA	1 cut(s)	520
Bsp1286I	GDGCHC	3 cut(s)	752, 801, 1051
Bsp143I	GATC	2 cut(s)	375, 1096
Bsp19I	CCATGG	1 cut(s)	473
BspACI	CCGC	1 cut(s)	846
BspANI	GGCC	5 cut(s)	472, 498, 637, 823, 973
BspCNI	CTCAG	3 cut(s)	93, 289, 587
BspLI	GGNNCC	2 cut(s)	764, 948
BspMI	ACCTGC	1 cut(s)	613
BspOI	GCTAGC	1 cut(s)	809
BspPI	GGATC	1 cut(s)	383
BspT104I	TTCGAA	1 cut(s)	520
BspT107I	GGYRCC	2 cut(s)	762, 946
BsrDI	GCAATG	1 cut(s)	284
BsrFI	RCCGGY	2 cut(s)	765, 978
BsrI	ACTGG	2 cut(s)	806, 1116
BssAI	RCCGGY	2 cut(s)	765, 978
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	2 cut(s)	375, 1096
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	2 cut(s)	515, 836
BstBI	TTCGAA	1 cut(s)	520
BstC8I	GCNNGC	5 cut(s)	544, 561, 721, 807, 1061
BstDEI	CTNAG	4 cut(s)	80, 230, 276, 574
BstDSI	CCRYGG	1 cut(s)	473
BstF5I	GGATG	4 cut(s)	447, 468, 748, 991
BstHHI	GCGC	1 cut(s)	990
BstKTI	GATC	2 cut(s)	378, 1099
BstMAI	GTCTC	1 cut(s)	1127
BstMBI	GATC	2 cut(s)	375, 1096
BstMWI	GCNNNNNNNGC	6 cut(s)	264, 395, 829, 852, 970, 1046
BstNI	CCWGG	1 cut(s)	843
BstSCI	CCNGG	1 cut(s)	841
BstSLI	GKGCMC	1 cut(s)	801
BstV1I	GCAGC	4 cut(s)	407, 568, 796, 816
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	375
BstXI	CCANNNNNNTGG	2 cut(s)	617, 981
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	5 cut(s)	472, 498, 637, 823, 973
BtgI	CCRYGG	1 cut(s)	473
BtsCI	GGATG	4 cut(s)	447, 468, 748, 991
BtsIMutI	CAGTG	4 cut(s)	582, 691, 784, 799
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	5 cut(s)	544, 561, 721, 807, 1061
CfoI	GCGC	1 cut(s)	990
Cfr10I	RCCGGY	2 cut(s)	765, 978
Cfr13I	GGNCC	3 cut(s)	408, 821, 971
Csp6I	GTAC	4 cut(s)	445, 658, 763, 1090
CspAI	ACCGGT	1 cut(s)	978
CviAII	CATG	3 cut(s)	474, 728, 790
CviQI	GTAC	4 cut(s)	445, 658, 763, 1090
DdeI	CTNAG	4 cut(s)	80, 230, 276, 574
DpnI	GATC	2 cut(s)	377, 1098
DpnII	GATC	2 cut(s)	375, 1096
EaeI	YGGCCR	2 cut(s)	470, 635
Eco130I	CCWWGG	1 cut(s)	473
Eco147I	AGGCCT	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	752
Eco47I	GGWCC	1 cut(s)	408
Eco57I	CTGAAG	2 cut(s)	409, 433
EcoRII	CCWGG	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	473
EcoT22I	ATGCAT	1 cut(s)	1006
EcoT38I	GRGCYC	1 cut(s)	752
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	3 cut(s)	477, 731, 793
FalI	AAGNNNNNCTT	3 cut(s)	34, 318, 350
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	3 cut(s)	473, 727, 789
FauNDI	CATATG	1 cut(s)	640
FbaI	TGATCA	1 cut(s)	1096
Fnu4HI	GCNGC	4 cut(s)	396, 557, 810, 830
FokI	GGATG	4 cut(s)	454, 475, 755, 978
FriOI	GRGCYC	1 cut(s)	752
Fsp4HI	GCNGC	4 cut(s)	396, 557, 810, 830
FspBI	CTAG	1 cut(s)	806
GlaI	GCGC	1 cut(s)	989
GluI	GCNGC	4 cut(s)	396, 557, 810, 830
GsuI	CTGGAG	2 cut(s)	238, 1133
HaeIII	GGCC	5 cut(s)	472, 498, 637, 823, 973
HapII	CCGG	2 cut(s)	766, 979
HhaI	GCGC	1 cut(s)	990
Hin1II	CATG	3 cut(s)	477, 731, 793
Hin6I	GCGC	1 cut(s)	988
HinP1I	GCGC	1 cut(s)	988
HinfI	GANTC	2 cut(s)	272, 317
HpaII	CCGG	2 cut(s)	766, 979
HphI	GGTGA	2 cut(s)	198, 548
Hpy166II	GTNNAC	2 cut(s)	582, 658
Hpy188I	TCNGA	4 cut(s)	279, 756, 934, 1101
Hpy188III	TCNNGA	2 cut(s)	301, 439
Hpy8I	GTNNAC	2 cut(s)	582, 658
HpyAV	CCTTC	6 cut(s)	110, 307, 623, 812, 1052, 1096
HpyCH4III	ACNGT	2 cut(s)	515, 836
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	9 cut(s)	389, 395, 812, 832, 898, 923, 964, 1004, 1163
HpyF10VI	GCNNNNNNNGC	6 cut(s)	264, 395, 829, 852, 970, 1046
HpyF3I	CTNAG	4 cut(s)	80, 230, 276, 574
HpySE526I	ACGT	1 cut(s)	697
Hsp92II	CATG	3 cut(s)	477, 731, 793
HspAI	GCGC	1 cut(s)	988
KpnI	GGTACC	1 cut(s)	766
Ksp22I	TGATCA	1 cut(s)	1096
Kzo9I	GATC	2 cut(s)	375, 1096
LmnI	GCTCC	2 cut(s)	251, 852
Lsp1109I	GCAGC	4 cut(s)	407, 568, 796, 816
LweI	GCATC	1 cut(s)	1013
MaeI	CTAG	1 cut(s)	806
MaeII	ACGT	1 cut(s)	697
MaeIII	GTNAC	3 cut(s)	12, 568, 883
MalI	GATC	2 cut(s)	377, 1098
MboI	GATC	2 cut(s)	375, 1096
MboII	GAAGA	4 cut(s)	228, 415, 640, 667
MfeI	CAATTG	2 cut(s)	384, 390
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	3 cut(s)	752, 801, 1051
MlsI	TGGCCA	2 cut(s)	472, 637
MluCI	AATT	8 cut(s)	109, 124, 170, 341, 384, 390, 415, 856
MluNI	TGGCCA	2 cut(s)	472, 637
MmeI	TCCRAC	1 cut(s)	830
MnlI	CCTC	9 cut(s)	164, 246, 317, 421, 583, 762, 1108, 1111, 1140
Mox20I	TGGCCA	2 cut(s)	472, 637
Mph1103I	ATGCAT	1 cut(s)	1006
MscI	TGGCCA	2 cut(s)	472, 637
MseI	TTAA	2 cut(s)	147, 344
MslI	CAYNNNNRTG	2 cut(s)	615, 979
Msp20I	TGGCCA	2 cut(s)	472, 637
MspA1I	CMGCKG	1 cut(s)	453
MspI	CCGG	2 cut(s)	766, 979
MspR9I	CCNGG	1 cut(s)	843
MunI	CAATTG	2 cut(s)	384, 390
MvaI	CCWGG	1 cut(s)	843
MwoI	GCNNNNNNNGC	6 cut(s)	264, 395, 829, 852, 970, 1046
NcoI	CCATGG	1 cut(s)	473
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	2 cut(s)	375, 1096
NheI	GCTAGC	1 cut(s)	805
NlaIII	CATG	3 cut(s)	477, 731, 793
NlaIV	GGNNCC	2 cut(s)	764, 948
NmuCI	GTSAC	2 cut(s)	12, 883
NsiI	ATGCAT	1 cut(s)	1006
NspV	TTCGAA	1 cut(s)	520
PaqCI	CACCTGC	1 cut(s)	613
PceI	AGGCCT	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	272, 317
PflMI	CCANNNNNTGG	1 cut(s)	405
PinAI	ACCGGT	1 cut(s)	978
PkrI	GCNGC	4 cut(s)	397, 558, 811, 831
Psp1406I	AACGTT	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	841
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	2 cut(s)	764, 948
PspPI	GGNCC	3 cut(s)	408, 821, 971
PsuI	RGATCY	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	453
RsaI	GTAC	4 cut(s)	446, 659, 764, 1091
RsaNI	GTAC	4 cut(s)	445, 658, 763, 1090
RseI	CAYNNNNRTG	2 cut(s)	615, 979
SaqAI	TTAA	2 cut(s)	147, 344
SatI	GCNGC	4 cut(s)	396, 557, 810, 830
Sau3AI	GATC	2 cut(s)	375, 1096
Sau96I	GGNCC	3 cut(s)	408, 821, 971
ScrFI	CCNGG	1 cut(s)	843
SduI	GDGCHC	3 cut(s)	752, 801, 1051
SfaNI	GCATC	1 cut(s)	1013
SfuI	TTCGAA	1 cut(s)	520
SinI	GGWCC	1 cut(s)	408
SmiMI	CAYNNNNRTG	2 cut(s)	615, 979
Sse9I	AATT	8 cut(s)	109, 124, 170, 341, 384, 390, 415, 856
SseBI	AGGCCT	1 cut(s)	498
SsiI	CCGC	1 cut(s)	846
SspMI	CTAG	1 cut(s)	806
StuI	AGGCCT	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	515, 836
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	2 cut(s)	520, 1045
TasI	AATT	8 cut(s)	109, 124, 170, 341, 384, 390, 415, 856
TatI	WGTACW	2 cut(s)	444, 1089
TfiI	GAWTC	2 cut(s)	272, 317
Tru1I	TTAA	2 cut(s)	147, 344
Tru9I	TTAA	2 cut(s)	147, 344
TscAI	CASTG	4 cut(s)	582, 691, 784, 806
TseFI	GTSAC	2 cut(s)	12, 883
TseI	GCWGC	4 cut(s)	395, 556, 809, 829
Tsp45I	GTSAC	2 cut(s)	12, 883
TspDTI	ATGAA	2 cut(s)	309, 1174
TspRI	CASTG	4 cut(s)	582, 691, 784, 806
Van91I	CCANNNNNTGG	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	408
XspI	CTAG	1 cut(s)	806
Zsp2I	ATGCAT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.