Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Reverse (-)

22681652 .. 22684279

Gene Structure 2628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCATCTAGCAGTCCATTTTTTGATGACATCCGGACCAAATCTGAGGTAATTGATCCTCCACAAAGTGAAGACATGCTGGATGTTGGAGAAAGTGTCGATGATGCTACTTTAAAGACCCTAAAACCTAATGTGATGGTTTCTAGCAATGTCCGTGAGCTGCTGGAGTGCCCTGTATGCTTAAATGCTATGTACCCCCCAATTCATCAGTGTTCAAATGGTCACACATTATGTTCTGCTTGCAAACCAAGGGTTCACAACCGATGCCCAACTTGCCGGCATGAACTTGGTAATATCAGGTGTCTTGCATTGGAGAAGGTGGCTGCTTCTCTTGAACTTCCATGTAAATACCAGAATTTTGGTTGCATGGGCATATACCCTTACTACAGCAAGCTAAAGCATGAATCTCAGTGTCTCCATAGACCCTACAACTGCCCCTATGCTGGTTCTGAATGCACCATCGTTGGAGATATTCCTTATCTTGTTGCCCATTTAAAAGATGATCACAAAGTTGACATGCACAATGGCAGCACTTTCAACCATCGCTATGTAAAATCAAATCCACAAGAAGTTGAAAACGCTACTTGGATGCTAACGGTTTTTAGTTGCTTCAATCAGTATTTTTGCCTACATTTTGAAGCTTTCCAGCTCGGAATGGCTCCTGTCTACATAGCATTCTTGCGGTTCATGGGTGATGATAACGAGGCCAAGAACTACAGCTACAGTCTAGAAGTGGGCGGGAATGGGAGGAAGATGATATGGCAGGGGGTGCCACGTAGCATTAGGGATAGCCACCGGAAGGTTCGTGACAGTTTTGATGGTCTCATTATTCAACGCAATATGGCTCTCTTCTTCTCAGGGGTAGACCGGAAGGAATTGAAGCTTAGGGTGACCGGAAGGATATGGAAGGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080148 GO:0140096 GO:1901564 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

306

Amino Acids

34.84

Weight (kDa)

7.52

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	769
AccI	GTMKAC	2 cut(s)	666, 864
AccIII	TCCGGA	1 cut(s)	33
AciI	CCGC	2 cut(s)	682, 738
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	355
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	443, 799
AgsI	TTSAA	8 cut(s)	216, 335, 538, 575, 613, 638, 833, 880
AluBI	AGCT	6 cut(s)	160, 394, 641, 649, 720, 883
AluI	AGCT	6 cut(s)	160, 394, 641, 649, 720, 883
Alw26I	GTCTC	2 cut(s)	419, 827
AlwI	GGATC	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	33
AoxI	GGCC	1 cut(s)	705
ApeKI	GCWGC	3 cut(s)	160, 323, 528
ApoI	RAATTY	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	704, 901
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	769
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	147, 310, 540
BccI	CCATC	4 cut(s)	130, 467, 549, 812
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	419, 827
BfaI	CTAG	3 cut(s)	9, 144, 728
BfmI	CTRYAG	3 cut(s)	385, 715, 721
BisI	GCNGC	3 cut(s)	161, 324, 529
BlsI	GCNGC	3 cut(s)	162, 325, 530
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	660, 771
BmsI	GCATC	4 cut(s)	14, 94, 254, 579
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	884
BsaAI	YACGTR	1 cut(s)	776
BsaI	GGTCTC	1 cut(s)	827
BsaJI	CCNNGG	1 cut(s)	248
BsaWI	WCCGGW	4 cut(s)	33, 795, 867, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 799
Bse118I	RCCGGY	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	154
BseAI	TCCGGA	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	3 cut(s)	30, 88, 594
BseLI	CCNNNNNNNGG	2 cut(s)	443, 799
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	36, 422, 870
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	147, 310, 540
BshFI	GGCC	1 cut(s)	707
BshNI	GGYRCC	1 cut(s)	769
BsiSI	CCGG	5 cut(s)	34, 277, 796, 868, 894
BslI	CCNNNNNNNGG	2 cut(s)	443, 799
BsmAI	GTCTC	2 cut(s)	419, 827
BsmI	GAATGC	2 cut(s)	458, 674
BsnI	GGCC	1 cut(s)	707
Bso31I	GGTCTC	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp13I	TCCGGA	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	55, 502
BspACI	CCGC	2 cut(s)	682, 738
BspANI	GGCC	1 cut(s)	707
BspCNI	CTCAG	3 cut(s)	37, 421, 869
BspEI	TCCGGA	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	660, 771
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	769
BspTNI	GGTCTC	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	2 cut(s)	55, 502
BssT1I	CCWWGG	1 cut(s)	248
Bst4CI	ACNGT	4 cut(s)	598, 725, 812, 915
Bst6I	CTCTTC	1 cut(s)	854
BstAPI	GCANNNNNTGC	1 cut(s)	769
BstBAI	YACGTR	1 cut(s)	776
BstC8I	GCNNGC	3 cut(s)	241, 278, 392
BstDEI	CTNAG	4 cut(s)	45, 408, 856, 884
BstEII	GGTNACC	1 cut(s)	889
BstF5I	GGATG	3 cut(s)	30, 88, 594
BstKTI	GATC	2 cut(s)	58, 505
BstMAI	GTCTC	2 cut(s)	419, 827
BstMBI	GATC	2 cut(s)	55, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 273, 769
BstNSI	RCATGY	2 cut(s)	79, 520
BstPI	GGTNACC	1 cut(s)	889
BstSFI	CTRYAG	3 cut(s)	385, 715, 721
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	3 cut(s)	147, 310, 540
BstV2I	GAAGAC	1 cut(s)	78
BstXI	CCANNNNNNTGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	707
BtgZI	GCGATG	1 cut(s)	527
BtsCI	GGATG	3 cut(s)	30, 88, 594
BtsIMutI	CAGTG	2 cut(s)	215, 416
Cac8I	GCNNGC	3 cut(s)	241, 278, 392
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	7 cut(s)	76, 281, 342, 367, 401, 517, 688
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	4 cut(s)	45, 408, 856, 884
DpnI	GATC	2 cut(s)	57, 504
DpnII	GATC	2 cut(s)	55, 502
DraI	TTTAAA	2 cut(s)	114, 495
DraIII	CACNNNGTG	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
Eco130I	CCWWGG	1 cut(s)	248
Eco31I	GGTCTC	1 cut(s)	827
Eco47I	GGWCC	1 cut(s)	36
Eco91I	GGTNACC	1 cut(s)	889
EcoO65I	GGTNACC	1 cut(s)	889
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	7 cut(s)	79, 284, 345, 370, 404, 520, 691
FatI	CATG	7 cut(s)	75, 280, 341, 366, 400, 516, 687
FauI	CCCGC	1 cut(s)	731
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	2 cut(s)	666, 864
Fnu4HI	GCNGC	3 cut(s)	161, 324, 529
FokI	GGATG	3 cut(s)	17, 95, 601
Fsp4HI	GCNGC	3 cut(s)	161, 324, 529
FspBI	CTAG	3 cut(s)	9, 144, 728
GluI	GCNGC	3 cut(s)	161, 324, 529
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	707
HapII	CCGG	5 cut(s)	34, 277, 796, 868, 894
Hin1II	CATG	7 cut(s)	79, 284, 345, 370, 404, 520, 691
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	2 cut(s)	639, 881
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	5 cut(s)	34, 277, 796, 868, 894
HphI	GGTGA	2 cut(s)	704, 901
Hpy166II	GTNNAC	4 cut(s)	256, 514, 667, 865
Hpy188I	TCNGA	3 cut(s)	46, 451, 653
Hpy188III	TCNNGA	4 cut(s)	34, 332, 728, 806
Hpy8I	GTNNAC	4 cut(s)	256, 514, 667, 865
HpyAV	CCTTC	5 cut(s)	310, 793, 865, 891, 901
HpyCH4III	ACNGT	4 cut(s)	598, 725, 812, 915
HpyCH4IV	ACGT	1 cut(s)	775
HpyCH4V	TGCA	5 cut(s)	243, 308, 366, 456, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 273, 769
HpyF3I	CTNAG	4 cut(s)	45, 408, 856, 884
HpySE526I	ACGT	1 cut(s)	775
Hsp92II	CATG	7 cut(s)	79, 284, 345, 370, 404, 520, 691
Kpn2I	TCCGGA	1 cut(s)	33
KroI	GCCGGC	1 cut(s)	276
KroNI	GCCGGC	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	55, 502
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	3 cut(s)	147, 310, 540
LweI	GCATC	4 cut(s)	14, 94, 254, 579
MaeI	CTAG	3 cut(s)	9, 144, 728
MaeII	ACGT	1 cut(s)	775
MaeIII	GTNAC	3 cut(s)	221, 806, 889
MalI	GATC	2 cut(s)	57, 504
MboI	GATC	2 cut(s)	55, 502
MboII	GAAGA	4 cut(s)	83, 763, 841, 844
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	4 cut(s)	51, 201, 355, 875
MmeI	TCCRAC	2 cut(s)	67, 445
MnlI	CCTC	4 cut(s)	40, 69, 697, 741
MroI	TCCGGA	1 cut(s)	33
MroNI	GCCGGC	1 cut(s)	276
MseI	TTAA	3 cut(s)	113, 182, 494
MslI	CAYNNNNRTG	1 cut(s)	546
MspI	CCGG	5 cut(s)	34, 277, 796, 868, 894
Mva1269I	GAATGC	2 cut(s)	458, 674
MwoI	GCNNNNNNNGC	3 cut(s)	177, 273, 769
NaeI	GCCGGC	1 cut(s)	278
NdeII	GATC	2 cut(s)	55, 502
NgoMIV	GCCGGC	1 cut(s)	276
NlaIII	CATG	7 cut(s)	79, 284, 345, 370, 404, 520, 691
NlaIV	GGNNCC	2 cut(s)	660, 771
NmuCI	GTSAC	3 cut(s)	221, 806, 889
NspI	RCATGY	2 cut(s)	79, 520
PctI	GAATGC	2 cut(s)	458, 674
PdiI	GCCGGC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	3 cut(s)	162, 325, 530
Ppu21I	YACGTR	1 cut(s)	776
PspEI	GGTNACC	1 cut(s)	889
PspN4I	GGNNCC	2 cut(s)	660, 771
PspPI	GGNCC	1 cut(s)	36
PsrI	GAACNNNNNNTAC	2 cut(s)	704, 736
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	3 cut(s)	113, 182, 494
SatI	GCNGC	3 cut(s)	161, 324, 529
Sau3AI	GATC	2 cut(s)	55, 502
Sau96I	GGNCC	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	4 cut(s)	14, 94, 254, 579
SfcI	CTRYAG	3 cut(s)	385, 715, 721
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	546
Sse9I	AATT	4 cut(s)	51, 201, 355, 875
SsiI	CCGC	2 cut(s)	682, 738
SspMI	CTAG	3 cut(s)	9, 144, 728
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	4 cut(s)	598, 725, 812, 915
TaiI	ACGT	1 cut(s)	778
TaqI	TCGA	1 cut(s)	99
TasI	AATT	4 cut(s)	51, 201, 355, 875
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	3 cut(s)	113, 182, 494
Tru9I	TTAA	3 cut(s)	113, 182, 494
TscAI	CASTG	2 cut(s)	215, 416
TseFI	GTSAC	3 cut(s)	221, 806, 889
TseI	GCWGC	3 cut(s)	160, 323, 528
Tsp45I	GTSAC	3 cut(s)	221, 806, 889
TspDTI	ATGAA	4 cut(s)	194, 297, 417, 676
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	2 cut(s)	215, 416
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	355
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	2 cut(s)	79, 520
XmiI	GTMKAC	2 cut(s)	666, 864
XspI	CTAG	3 cut(s)	9, 144, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.