Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Forward (+)

11612915 .. 11618188

Gene Structure 5274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G080800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCAATGGCAAAGTTGGAGACAGGTAGTATGCTCAATAAAACTTCCCCTGGTTTGGGTGGAAAAAATGGTCTTTATTCAACCAATGGCGTGCATGAGTTACTTGAGTGCCCTGTCTGCACAAATTTGATGTACCCTCCTATTCATCAGTGTCCAAATGGTCACACATTATGTTCAGACTGCAAGATTAGGGTGCACAATTGTTGTCCCACTTGCCGCTATGAACTTGGAGATATAAGGTGTTTGGCTTTGGAGAAAGTTGCTGAATCATTGGAACTTCCGTGCAGATACCAGAGTTTAGGCTGTCATGATATATTTCCATACTACAGCAAGCTCAAACATGAGCAACACTGTCGGTTTCGTCTATACAATTGCCCTTATGCTGGATCTGAGTGCTCTGTTACAGGTGATATCCCTACTCTTGTTGGGCATCTTAAGGAGGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAACCATAGATATGTTAAAGCAAACCCAAATGAAGTTGAAAATGCAACTTGGATGCTAACTGTCTTTAATTGTTTTGGAAGACAGTTCTGTTTGCACTTTGAAGCCTTCCAGCTAGGCATGGCTCCAGTCTACATGGCCTTTTTACGATTCATGGGTGATGACATTGAGGCTAAGAAATTTAGCTACAGTTTGGAAGTAGGCGCAAATGGCCGTAAGCTGATATGGCAGGGAATTCCTAGGAGTATCCGGGACAGTCATAGAAAAGTTCGTGACAGCCAAGATGGACTCATTATTCAGAGGAATCTAGCTCTGTATTTCTCTGGTGGGGATAAGCAAGAACTAAAGTTGAGGATTACTGGCCGTATATGGAAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0043170 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902115 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

286

Amino Acids

32.48

Weight (kDa)

8.08

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	606
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	394, 450
AcoI	YGGCCR	2 cut(s)	685, 835
AcsI	RAATTY	3 cut(s)	124, 653, 708
AfaI	GTAC	2 cut(s)	134, 472
AfiI	CCNNNNNNNGG	3 cut(s)	55, 56, 383
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	81, 478, 515, 578
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	5 cut(s)	334, 589, 660, 694, 785
AluI	AGCT	5 cut(s)	334, 589, 660, 694, 785
Alw21I	GWGCWC	2 cut(s)	198, 398
Alw26I	GTCTC	1 cut(s)	14
Alw44I	GTGCAC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	394, 450
AoxI	GGCC	3 cut(s)	612, 685, 835
ApaLI	GTGCAC	1 cut(s)	194
ApoI	RAATTY	3 cut(s)	124, 653, 708
AspA2I	CCTAGG	1 cut(s)	713
AspLEI	GCGC	1 cut(s)	680
AsuC2I	CCSGG	1 cut(s)	725
AsuHPI	GGTGA	2 cut(s)	419, 644
AvrII	CCTAGG	1 cut(s)	713
BaeGI	GKGCMC	2 cut(s)	113, 198
BaeI	ACNNNNGTAYC	2 cut(s)	280, 313
BbsI	GAAGAC	1 cut(s)	562
Bbv12I	GWGCWC	2 cut(s)	198, 398
BccI	CCATC	2 cut(s)	458, 752
BceAI	ACGGC	2 cut(s)	672, 822
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	731
BcnI	CCSGG	1 cut(s)	725
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	3 cut(s)	590, 714, 782
BfmI	CTRYAG	2 cut(s)	325, 661
BfrI	CTTAAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	731
BisI	GCNGC	1 cut(s)	217
BlnI	CCTAGG	1 cut(s)	713
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	51, 725
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	2 cut(s)	51, 725
BmsI	GCATC	2 cut(s)	439, 519
BpiI	GAAGAC	1 cut(s)	562
BpmI	CTGGAG	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	725
BsaJI	CCNNGG	2 cut(s)	49, 713
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 56, 383
Bse1I	ACTGG	2 cut(s)	602, 838
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	49, 713
BseGI	GGATG	1 cut(s)	534
BseLI	CCNNNNNNNGG	3 cut(s)	55, 56, 383
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	602, 838
BseSI	GKGCMC	2 cut(s)	113, 198
BsgI	GTGCAG	2 cut(s)	103, 304
BshFI	GGCC	3 cut(s)	614, 687, 837
BsiHKAI	GWGCWC	2 cut(s)	198, 398
BsiSI	CCGG	1 cut(s)	724
BslFI	GGGAC	2 cut(s)	192, 740
BslI	CCNNNNNNNGG	3 cut(s)	55, 56, 383
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	192, 740
BsnI	GGCC	3 cut(s)	614, 687, 837
Bsp1286I	GDGCHC	3 cut(s)	113, 198, 398
Bsp143I	GATC	2 cut(s)	386, 442
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	3 cut(s)	614, 687, 837
BspCNI	CTCAG	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	2 cut(s)	394, 450
BspTI	CTTAAG	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	602, 838
BssECI	CCNNGG	2 cut(s)	49, 713
BssMI	GATC	2 cut(s)	386, 442
BssT1I	CCWWGG	1 cut(s)	713
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	5 cut(s)	353, 538, 561, 665, 731
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	92, 332
BstDEI	CTNAG	2 cut(s)	390, 648
BstF5I	GGATG	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	2 cut(s)	389, 445
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	386, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 684, 700
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	2 cut(s)	49, 723
BstSFI	CTRYAG	2 cut(s)	325, 661
BstSLI	GKGCMC	2 cut(s)	113, 198
BstV2I	GAAGAC	1 cut(s)	562
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuI	GTATCC	1 cut(s)	731
BsuRI	GGCC	3 cut(s)	614, 687, 837
BtsCI	GGATG	1 cut(s)	534
BtsIMutI	CAGTG	2 cut(s)	155, 349
Cac8I	GCNNGC	2 cut(s)	92, 332
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	680
Csp6I	GTAC	2 cut(s)	133, 471
CviAII	CATG	8 cut(s)	95, 308, 341, 457, 461, 595, 610, 628
CviQI	GTAC	2 cut(s)	133, 471
DdeI	CTNAG	2 cut(s)	390, 648
DpnI	GATC	2 cut(s)	388, 444
DpnII	GATC	2 cut(s)	386, 442
EaeI	YGGCCR	2 cut(s)	685, 835
Eco130I	CCWWGG	1 cut(s)	713
Eco32I	GATATC	1 cut(s)	412
EcoRI	GAATTC	1 cut(s)	708
EcoRII	CCWGG	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	713
EcoT22I	ATGCAT	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	713
FaeI	CATG	8 cut(s)	98, 311, 344, 460, 464, 598, 613, 631
FaqI	GGGAC	2 cut(s)	192, 740
FatI	CATG	8 cut(s)	94, 307, 340, 456, 460, 594, 609, 627
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	1 cut(s)	541
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	3 cut(s)	590, 714, 782
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	3 cut(s)	614, 687, 837
HapII	CCGG	1 cut(s)	724
HhaI	GCGC	1 cut(s)	680
Hin1II	CATG	8 cut(s)	98, 311, 344, 460, 464, 598, 613, 631
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	4 cut(s)	266, 624, 762, 778
HpaII	CCGG	1 cut(s)	724
HphI	GGTGA	2 cut(s)	419, 644
Hpy166II	GTNNAC	4 cut(s)	196, 454, 471, 607
Hpy188I	TCNGA	3 cut(s)	178, 391, 774
Hpy188III	TCNNGA	2 cut(s)	308, 746
Hpy8I	GTNNAC	4 cut(s)	196, 454, 471, 607
HpyAV	CCTTC	2 cut(s)	484, 592
HpyCH4III	ACNGT	5 cut(s)	353, 538, 561, 665, 731
HpyCH4V	TGCA	8 cut(s)	94, 120, 183, 196, 285, 460, 521, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 684, 700
HpyF3I	CTNAG	2 cut(s)	390, 648
Hsp92II	CATG	8 cut(s)	98, 311, 344, 460, 464, 598, 613, 631
HspAI	GCGC	1 cut(s)	678
Kzo9I	GATC	2 cut(s)	386, 442
LmnI	GCTCC	1 cut(s)	604
LweI	GCATC	2 cut(s)	439, 519
MaeI	CTAG	3 cut(s)	590, 714, 782
MaeIII	GTNAC	4 cut(s)	99, 161, 400, 746
MalI	GATC	2 cut(s)	388, 444
MboI	GATC	2 cut(s)	386, 442
MboII	GAAGA	1 cut(s)	567
MfeI	CAATTG	2 cut(s)	199, 370
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	3 cut(s)	113, 198, 398
MluCI	AATT	6 cut(s)	124, 199, 370, 544, 653, 708
MlyI	GAGTC	1 cut(s)	756
MnlI	CCTC	5 cut(s)	147, 433, 637, 768, 819
Mph1103I	ATGCAT	1 cut(s)	462
MseI	TTAA	3 cut(s)	435, 492, 543
MslI	CAYNNNNRTG	1 cut(s)	486
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	1 cut(s)	724
MspR9I	CCNGG	2 cut(s)	51, 725
MunI	CAATTG	2 cut(s)	199, 370
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	3 cut(s)	117, 684, 700
NciI	CCSGG	1 cut(s)	725
NdeII	GATC	2 cut(s)	386, 442
NlaIII	CATG	8 cut(s)	98, 311, 344, 460, 464, 598, 613, 631
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	161, 746
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	1 cut(s)	460
PagI	TCATGA	1 cut(s)	307
PfeI	GAWTC	3 cut(s)	266, 624, 778
PfoI	TCCNGGA	1 cut(s)	723
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	2 cut(s)	134, 472
RsaNI	GTAC	2 cut(s)	133, 471
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	435, 492, 543
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	386, 442
SchI	GAGTC	1 cut(s)	756
ScrFI	CCNGG	2 cut(s)	51, 725
SduI	GDGCHC	3 cut(s)	113, 198, 398
SfaNI	GCATC	2 cut(s)	439, 519
SfcI	CTRYAG	2 cut(s)	325, 661
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	2 cut(s)	104, 434
SmoI	CTYRAG	2 cut(s)	104, 434
Sse9I	AATT	6 cut(s)	124, 199, 370, 544, 653, 708
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	3 cut(s)	590, 714, 782
StyD4I	CCNGG	2 cut(s)	49, 723
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	5 cut(s)	353, 538, 561, 665, 731
TasI	AATT	6 cut(s)	124, 199, 370, 544, 653, 708
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	3 cut(s)	266, 624, 778
Tru1I	TTAA	3 cut(s)	435, 492, 543
Tru9I	TTAA	3 cut(s)	435, 492, 543
TscAI	CASTG	2 cut(s)	155, 356
TseFI	GTSAC	2 cut(s)	161, 746
Tsp45I	GTSAC	2 cut(s)	161, 746
TspDTI	ATGAA	4 cut(s)	134, 237, 522, 616
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	2 cut(s)	155, 356
Vha464I	CTTAAG	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	194
XapI	RAATTY	3 cut(s)	124, 653, 708
XceI	RCATGY	1 cut(s)	460
XmaJI	CCTAGG	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	3 cut(s)	590, 714, 782
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.