Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Forward (+)

86532049 .. 86536407

Gene Structure 4359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTCTCCTGGAGGCCGCTTCTGCGAGGATGTGGCTGACACTCATATTACATTGGCCGATTCCGATGCAGCGACTTCGTTTGCTGATCTAAGGACTTCCCCCTTTAGAAAAGCTCTTCCTGGTTTAAATGGAAATGCAGGAATGCCATCAAACAAGAATGTGCATGACCTACTCGAGTGCCCCGTTTGCATGAATTTAATGTGTCCTCCAATTCACCAGTGTCCAAATGGCCATACTTTATGCTCGAGCTGTAAGACTAGAGTGCAGAACTGTTGCCCCACTTGTCGTAATGAGCTTGGAAATATAAGGTGCTTGGCACTGGAGAAAGTAGCAGAGTCCCTGGATCTTCCTTGTAGATATCAAATTTATGGTTGCCCTGATATATTCCCTTACTACAGCAAGCTAAAGCATGAGAAAGTCTGTAAATATCGTCCTTACAACTGCCCTTATGCTGGAGCTGAATGTTCTGTTACTGGAGATATCCTATTCCTTATGATGCATCTTAAAAATGATCACAAGGTTGACATGCATGATGGATCTACTTTCAACCATAGATATGTTAAGTCCAATCCCCAAGAAGTTGAAAATGCTACGTGGATGTTAACCATCTTTAACTGTTTTGGCCGTCAGTTCTGCTTGCATTTTGAGGCATTCCACATTGGAACAGCACCTGTATACATGGCCTTCCTTAGATTCATGGGTGATGACGATGAGGCCAAGCAATTCACTTACAGTCTTGAAGTTGGTGGCGGTGGCAGAAAGCTGACATGGCAAGGAATTCCGAGGAGTATTCGTGATAGCCACCGAAAGGTTCGTGACAGTCAAGATGGACTGATCATTCAGAGGAACTTGGCACTCTTCTTCTCCGGTGGTAATAGGCAGGAGCTGAAGCTGAAAGTGGCGGGCCGTATATGGAAAGAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901564 GO:1902115 GO:1902584 GO:2000070 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

309

Amino Acids

34.81

Weight (kDa)

8.24

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	60 - 95	1.7e-11	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	109 - 184	2.1e-30	Sina, zinc finger
Sina_TRAF	PF03145	204 - 300	3.5e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	675
AciI	CCGC	3 cut(s)	16, 750, 902
AclWI	GGATC	2 cut(s)	351, 544
AcoI	YGGCCR	3 cut(s)	54, 229, 622
AcsI	RAATTY	3 cut(s)	193, 363, 777
AcuI	CTGAAG	1 cut(s)	908
AfiI	CCNNNNNNNGG	2 cut(s)	452, 808
AgsI	TTSAA	3 cut(s)	547, 584, 740
AjnI	CCWGG	3 cut(s)	7, 118, 339
AluBI	AGCT	8 cut(s)	113, 249, 295, 403, 458, 763, 886, 892
AluI	AGCT	8 cut(s)	113, 249, 295, 403, 458, 763, 886, 892
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	351, 544
AlwNI	CAGNNNCTG	2 cut(s)	671, 886
Ama87I	CYCGRG	2 cut(s)	173, 244
AoxI	GGCC	7 cut(s)	13, 54, 229, 622, 681, 714, 904
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	3 cut(s)	193, 363, 777
AspS9I	GGNCC	1 cut(s)	904
AsuHPI	GGTGA	2 cut(s)	206, 713
AvaI	CYCGRG	2 cut(s)	173, 244
BaeGI	GKGCMC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	4 cut(s)	154, 527, 614, 821
BceAI	ACGGC	2 cut(s)	609, 891
BcgI	CGANNNNNNTGC	4 cut(s)	47, 57, 81, 91
BciT130I	CCWGG	3 cut(s)	9, 120, 341
BclI	TGATCA	2 cut(s)	511, 834
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	394
BisI	GCNGC	2 cut(s)	16, 69
BlsI	GCNGC	2 cut(s)	17, 70
Bme1390I	CCNGG	3 cut(s)	9, 120, 341
BmeT110I	CYCGRG	2 cut(s)	173, 244
BmgT120I	GGNCC	1 cut(s)	904
BmrFI	CCNGG	3 cut(s)	9, 120, 341
BmsI	GCATC	3 cut(s)	55, 486, 508
BpmI	CTGGAG	4 cut(s)	30, 341, 474, 495
BsaAI	YACGTR	1 cut(s)	594
BsaJI	CCNNGG	2 cut(s)	339, 782
BsaWI	WCCGGW	1 cut(s)	866
BsaXI	ACNNNNNCTCC	2 cut(s)	778, 808
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 808
Bse1I	ACTGG	3 cut(s)	217, 324, 478
BseBI	CCWGG	3 cut(s)	9, 120, 341
BseDI	CCNNGG	2 cut(s)	339, 782
BseGI	GGATG	2 cut(s)	34, 603
BseLI	CCNNNNNNNGG	2 cut(s)	452, 808
BseNI	ACTGG	3 cut(s)	217, 324, 478
BseRI	GAGGAG	1 cut(s)	799
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	7 cut(s)	15, 56, 231, 624, 683, 716, 906
BsiHKCI	CYCGRG	2 cut(s)	173, 244
BsiSI	CCGG	1 cut(s)	867
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	452, 808
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	322
BsmI	GAATGC	2 cut(s)	147, 650
BsnI	GGCC	7 cut(s)	15, 56, 231, 624, 683, 716, 906
BsoBI	CYCGRG	2 cut(s)	173, 244
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	5 cut(s)	85, 343, 511, 536, 834
BspACI	CCGC	3 cut(s)	16, 750, 902
BspANI	GGCC	7 cut(s)	15, 56, 231, 624, 683, 716, 906
BspPI	GGATC	2 cut(s)	351, 544
BspQI	GCTCTTC	1 cut(s)	120
BsrI	ACTGG	3 cut(s)	217, 324, 478
BssECI	CCNNGG	2 cut(s)	339, 782
BssMI	GATC	5 cut(s)	85, 343, 511, 536, 834
BssNAI	GTATAC	1 cut(s)	676
Bst1107I	GTATAC	1 cut(s)	676
Bst2UI	CCWGG	3 cut(s)	9, 120, 341
Bst4CI	ACNGT	4 cut(s)	272, 617, 734, 821
Bst6I	CTCTTC	2 cut(s)	120, 863
BstBAI	YACGTR	1 cut(s)	594
BstC8I	GCNNGC	3 cut(s)	401, 638, 904
BstDEI	CTNAG	2 cut(s)	89, 689
BstF5I	GGATG	2 cut(s)	34, 603
BstKTI	GATC	5 cut(s)	88, 346, 514, 539, 837
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	85, 343, 511, 536, 834
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 186, 769
BstNI	CCWGG	3 cut(s)	9, 120, 341
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	3 cut(s)	7, 118, 339
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	80
BstX2I	RGATCY	2 cut(s)	343, 536
BstYI	RGATCY	2 cut(s)	343, 536
BstZ17I	GTATAC	1 cut(s)	676
BsuRI	GGCC	7 cut(s)	15, 56, 231, 624, 683, 716, 906
BtsCI	GGATG	2 cut(s)	34, 603
BtsIMutI	CAGTG	3 cut(s)	224, 317, 922
Cac8I	GCNNGC	3 cut(s)	401, 638, 904
CaiI	CAGNNNCTG	2 cut(s)	671, 886
Cfr13I	GGNCC	1 cut(s)	904
CviAII	CATG	8 cut(s)	164, 190, 410, 526, 530, 679, 697, 768
DdeI	CTNAG	2 cut(s)	89, 689
DpnI	GATC	5 cut(s)	87, 345, 513, 538, 836
DpnII	GATC	5 cut(s)	85, 343, 511, 536, 834
DraI	TTTAAA	1 cut(s)	126
EaeI	YGGCCR	3 cut(s)	54, 229, 622
Eam1104I	CTCTTC	2 cut(s)	120, 863
EarI	CTCTTC	2 cut(s)	120, 863
Eco32I	GATATC	2 cut(s)	359, 481
Eco57I	CTGAAG	1 cut(s)	908
Eco88I	CYCGRG	2 cut(s)	173, 244
EcoRI	GAATTC	1 cut(s)	777
EcoRII	CCWGG	3 cut(s)	7, 118, 339
EcoRV	GATATC	2 cut(s)	359, 481
EcoT22I	ATGCAT	2 cut(s)	501, 531
FaeI	CATG	8 cut(s)	167, 193, 413, 529, 533, 682, 700, 771
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	8 cut(s)	163, 189, 409, 525, 529, 678, 696, 767
FauI	CCCGC	1 cut(s)	895
FbaI	TGATCA	2 cut(s)	511, 834
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	2 cut(s)	16, 69
FokI	GGATG	2 cut(s)	41, 610
Fsp4HI	GCNGC	2 cut(s)	16, 69
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	2 cut(s)	16, 69
GsuI	CTGGAG	4 cut(s)	30, 341, 474, 495
HaeIII	GGCC	7 cut(s)	15, 56, 231, 624, 683, 716, 906
HapII	CCGG	1 cut(s)	867
Hin1II	CATG	8 cut(s)	167, 193, 413, 529, 533, 682, 700, 771
HincII	GTYRAC	2 cut(s)	523, 603
HindII	GTYRAC	2 cut(s)	523, 603
HinfI	GANTC	3 cut(s)	59, 335, 693
HpaI	GTTAAC	1 cut(s)	603
HpaII	CCGG	1 cut(s)	867
HphI	GGTGA	2 cut(s)	206, 713
Hpy166II	GTNNAC	3 cut(s)	523, 603, 676
Hpy188I	TCNGA	3 cut(s)	64, 783, 843
Hpy188III	TCNNGA	4 cut(s)	737, 794, 815, 824
Hpy8I	GTNNAC	3 cut(s)	523, 603, 676
HpyAV	CCTTC	1 cut(s)	694
HpyCH4III	ACNGT	4 cut(s)	272, 617, 734, 821
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	8 cut(s)	68, 137, 163, 189, 265, 499, 529, 640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 186, 769
HpyF3I	CTNAG	2 cut(s)	89, 689
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	8 cut(s)	167, 193, 413, 529, 533, 682, 700, 771
Ksp22I	TGATCA	2 cut(s)	511, 834
KspAI	GTTAAC	1 cut(s)	603
Kzo9I	GATC	5 cut(s)	85, 343, 511, 536, 834
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	2 cut(s)	455, 883
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	3 cut(s)	55, 486, 508
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	2 cut(s)	469, 815
MalI	GATC	5 cut(s)	87, 345, 513, 538, 836
MboI	GATC	5 cut(s)	85, 343, 511, 536, 834
MboII	GAAGA	4 cut(s)	107, 338, 850, 853
MflI	RGATCY	2 cut(s)	343, 536
MhlI	GDGCHC	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	5 cut(s)	193, 210, 363, 722, 777
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	7 cut(s)	5, 19, 216, 640, 706, 777, 837
Mox20I	TGGCCA	1 cut(s)	231
Mph1103I	ATGCAT	2 cut(s)	501, 531
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	6 cut(s)	125, 197, 504, 561, 602, 612
MslI	CAYNNNNRTG	1 cut(s)	555
Msp20I	TGGCCA	1 cut(s)	231
MspI	CCGG	1 cut(s)	867
MspR9I	CCNGG	3 cut(s)	9, 120, 341
Mva1269I	GAATGC	2 cut(s)	147, 650
MvaI	CCWGG	3 cut(s)	9, 120, 341
MwoI	GCNNNNNNNGC	3 cut(s)	21, 186, 769
NdeII	GATC	5 cut(s)	85, 343, 511, 536, 834
NlaIII	CATG	8 cut(s)	167, 193, 413, 529, 533, 682, 700, 771
NmuCI	GTSAC	1 cut(s)	815
NsiI	ATGCAT	2 cut(s)	501, 531
NspI	RCATGY	1 cut(s)	529
PaeR7I	CTCGAG	2 cut(s)	173, 244
PciSI	GCTCTTC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	2 cut(s)	147, 650
PfeI	GAWTC	2 cut(s)	59, 693
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	17, 70
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	594
Psp6I	CCWGG	3 cut(s)	7, 118, 339
PspGI	CCWGG	3 cut(s)	7, 118, 339
PspPI	GGNCC	1 cut(s)	904
PspXI	VCTCGAGB	2 cut(s)	173, 244
PstNI	CAGNNNCTG	2 cut(s)	671, 886
PsuI	RGATCY	2 cut(s)	343, 536
RseI	CAYNNNNRTG	1 cut(s)	555
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	6 cut(s)	125, 197, 504, 561, 602, 612
SatI	GCNGC	2 cut(s)	16, 69
Sau3AI	GATC	5 cut(s)	85, 343, 511, 536, 834
Sau96I	GGNCC	1 cut(s)	904
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	3 cut(s)	9, 120, 341
SduI	GDGCHC	1 cut(s)	182
SfaNI	GCATC	3 cut(s)	55, 486, 508
SfcI	CTRYAG	1 cut(s)	394
Sfr274I	CTCGAG	2 cut(s)	173, 244
SlaI	CTCGAG	2 cut(s)	173, 244
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	173, 244
SmoI	CTYRAG	2 cut(s)	173, 244
Sse9I	AATT	5 cut(s)	193, 210, 363, 722, 777
SsiI	CCGC	3 cut(s)	16, 750, 902
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	7, 118, 339
TaaI	ACNGT	4 cut(s)	272, 617, 734, 821
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	2 cut(s)	174, 245
TasI	AATT	5 cut(s)	193, 210, 363, 722, 777
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	59, 693
Tru1I	TTAA	6 cut(s)	125, 197, 504, 561, 602, 612
Tru9I	TTAA	6 cut(s)	125, 197, 504, 561, 602, 612
TscAI	CASTG	2 cut(s)	224, 324
TseFI	GTSAC	1 cut(s)	815
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	815
TspDTI	ATGAA	2 cut(s)	206, 685
TspRI	CASTG	2 cut(s)	224, 324
XapI	RAATTY	3 cut(s)	193, 363, 777
XceI	RCATGY	1 cut(s)	529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XhoI	CTCGAG	2 cut(s)	173, 244
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	1 cut(s)	258
Zsp2I	ATGCAT	2 cut(s)	501, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.