Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Reverse (-)

2675828 .. 2678348

Gene Structure 2521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCTCCTGGAGGCCGCTTCTGCGAGGATGTGGCTGACACTCATATTACATTGGCCGATTCCGATGCAGCGACTTCCTGTAAGACTAGAGTGCAGAACTGTTGCCCCACTTGTCGTAATGAGCTTGGAAATATAAGGTGCTTGGCACTGGAGAAAGTAGCAGAGTCCCTGGATCTTCCTTGTAGATATCAAATTTATGGTTGCCCTGATATATTCCCTTACTACAGCAAGCTAAAGCATGAGAAAGTTGACATGCATGATGGATCTACTTTCAACCATAGATATGTTAAGTCCAATCCCCAAGAAGTTGAAAATGCTACGTGGATGTTAACCATCTTTAACTGTTTTGGCCGTCAGTTCTGCTTGCATTTTGAGGCATTCCACATTGGAACAGCACCTGTATACATGGCCTTCCTTAGATTCATGGGTGATGACGATGAGGCCAAGCAATTCACTTACAGTCTCGAAGTTGGTGGCGGTGGCAGAAAGCTGACATGGCAAGGAATTCCGAGGAGTATTCGCGATAGCCACCGAAAGGTTCGTGACAGTCAAGATGGACTGATCATTCAGAGGAACTTGGCACTTTTCTTCTCAGGTGGTAATAGGCAGGAGCTGAAGCTGAAAGTGGCGGGCCGTATATGGAAAGAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901564 GO:1902115 GO:1902584 GO:2000070 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

217

Amino Acids

24.78

Weight (kDa)

8.03

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_ZnF	PF21361	52 - 83	5.4e-08	Sina, zinc finger
Sina_TRAF	PF03145	113 - 209	1.6e-34	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	1 cut(s)	522
AciI	CCGC	3 cut(s)	16, 477, 629
AclWI	GGATC	2 cut(s)	180, 271
AcoI	YGGCCR	2 cut(s)	54, 349
AcsI	RAATTY	2 cut(s)	192, 504
AcuI	CTGAAG	1 cut(s)	635
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	2 cut(s)	274, 311
AjnI	CCWGG	2 cut(s)	7, 168
AluBI	AGCT	5 cut(s)	124, 232, 490, 613, 619
AluI	AGCT	5 cut(s)	124, 232, 490, 613, 619
Alw26I	GTCTC	2 cut(s)	9, 467
AlwI	GGATC	2 cut(s)	180, 271
AlwNI	CAGNNNCTG	2 cut(s)	398, 613
AoxI	GGCC	6 cut(s)	13, 54, 349, 408, 441, 631
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	2 cut(s)	192, 504
AspS9I	GGNCC	1 cut(s)	631
AsuHPI	GGTGA	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	3 cut(s)	254, 341, 548
BceAI	ACGGC	2 cut(s)	336, 618
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	2 cut(s)	9, 170
BclI	TGATCA	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	9, 467
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	223
BisI	GCNGC	2 cut(s)	16, 69
BlsI	GCNGC	2 cut(s)	17, 70
Bme1390I	CCNGG	2 cut(s)	9, 170
BmgT120I	GGNCC	1 cut(s)	631
BmrFI	CCNGG	2 cut(s)	9, 170
BmsI	GCATC	1 cut(s)	55
BpmI	CTGGAG	2 cut(s)	30, 170
BsaAI	YACGTR	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	168, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse1I	ACTGG	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	9, 170
BseDI	CCNNGG	2 cut(s)	168, 509
BseGI	GGATG	2 cut(s)	34, 330
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	526
BseXI	GCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	522
BshFI	GGCC	6 cut(s)	15, 56, 351, 410, 443, 633
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	2 cut(s)	9, 467
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	6 cut(s)	15, 56, 351, 410, 443, 633
Bsp143I	GATC	3 cut(s)	172, 263, 561
Bsp68I	TCGCGA	1 cut(s)	522
BspACI	CCGC	3 cut(s)	16, 477, 629
BspANI	GGCC	6 cut(s)	15, 56, 351, 410, 443, 633
BspCNI	CTCAG	1 cut(s)	605
BspFNI	CGCG	1 cut(s)	522
BspPI	GGATC	2 cut(s)	180, 271
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	168, 509
BssMI	GATC	3 cut(s)	172, 263, 561
BssNAI	GTATAC	1 cut(s)	403
Bst1107I	GTATAC	1 cut(s)	403
Bst2UI	CCWGG	2 cut(s)	9, 170
Bst4CI	ACNGT	4 cut(s)	101, 344, 461, 548
BstBAI	YACGTR	1 cut(s)	321
BstC8I	GCNNGC	3 cut(s)	230, 365, 631
BstDEI	CTNAG	2 cut(s)	416, 592
BstF5I	GGATG	2 cut(s)	34, 330
BstFNI	CGCG	1 cut(s)	522
BstKTI	GATC	3 cut(s)	175, 266, 564
BstMAI	GTCTC	2 cut(s)	9, 467
BstMBI	GATC	3 cut(s)	172, 263, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 496
BstNI	CCWGG	2 cut(s)	9, 170
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	7, 168
BstSFI	CTRYAG	1 cut(s)	223
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	80
BstX2I	RGATCY	2 cut(s)	172, 263
BstYI	RGATCY	2 cut(s)	172, 263
BstZ17I	GTATAC	1 cut(s)	403
BsuRI	GGCC	6 cut(s)	15, 56, 351, 410, 443, 633
BtsCI	GGATG	2 cut(s)	34, 330
BtsIMutI	CAGTG	2 cut(s)	146, 649
BtuMI	TCGCGA	1 cut(s)	522
Cac8I	GCNNGC	3 cut(s)	230, 365, 631
CaiI	CAGNNNCTG	2 cut(s)	398, 613
Cfr13I	GGNCC	1 cut(s)	631
CviAII	CATG	6 cut(s)	239, 253, 257, 406, 424, 495
DdeI	CTNAG	2 cut(s)	416, 592
DpnI	GATC	3 cut(s)	174, 265, 563
DpnII	GATC	3 cut(s)	172, 263, 561
EaeI	YGGCCR	2 cut(s)	54, 349
Eco32I	GATATC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	504
EcoRII	CCWGG	2 cut(s)	7, 168
EcoRV	GATATC	1 cut(s)	188
EcoT22I	ATGCAT	1 cut(s)	258
FaeI	CATG	6 cut(s)	242, 256, 260, 409, 427, 498
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	6 cut(s)	238, 252, 256, 405, 423, 494
FauI	CCCGC	1 cut(s)	622
FbaI	TGATCA	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	16, 69
FokI	GGATG	2 cut(s)	41, 337
Fsp4HI	GCNGC	2 cut(s)	16, 69
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	2 cut(s)	16, 69
GsuI	CTGGAG	2 cut(s)	30, 170
HaeIII	GGCC	6 cut(s)	15, 56, 351, 410, 443, 633
Hin1II	CATG	6 cut(s)	242, 256, 260, 409, 427, 498
HincII	GTYRAC	2 cut(s)	250, 330
HindII	GTYRAC	2 cut(s)	250, 330
HinfI	GANTC	3 cut(s)	59, 164, 420
HpaI	GTTAAC	1 cut(s)	330
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	250, 330, 403
Hpy188I	TCNGA	3 cut(s)	64, 510, 570
Hpy188III	TCNNGA	4 cut(s)	464, 521, 542, 551
Hpy8I	GTNNAC	3 cut(s)	250, 330, 403
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	4 cut(s)	101, 344, 461, 548
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	4 cut(s)	68, 94, 256, 367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 496
HpyF3I	CTNAG	2 cut(s)	416, 592
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	6 cut(s)	242, 256, 260, 409, 427, 498
Ksp22I	TGATCA	1 cut(s)	561
KspAI	GTTAAC	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	172, 263, 561
LmnI	GCTCC	1 cut(s)	610
LpnPI	CCDG	9 cut(s)	21, 91, 134, 155, 182, 219, 411, 579, 593
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	3 cut(s)	174, 265, 563
MboI	GATC	3 cut(s)	172, 263, 561
MboII	GAAGA	2 cut(s)	167, 580
MflI	RGATCY	2 cut(s)	172, 263
MluCI	AATT	3 cut(s)	192, 449, 504
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	6 cut(s)	5, 19, 367, 433, 504, 564
Mph1103I	ATGCAT	1 cut(s)	258
MseI	TTAA	3 cut(s)	288, 329, 339
MslI	CAYNNNNRTG	1 cut(s)	282
MspR9I	CCNGG	2 cut(s)	9, 170
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	2 cut(s)	9, 170
MvnI	CGCG	1 cut(s)	522
MwoI	GCNNNNNNNGC	2 cut(s)	21, 496
NdeII	GATC	3 cut(s)	172, 263, 561
NlaIII	CATG	6 cut(s)	242, 256, 260, 409, 427, 498
NmuCI	GTSAC	1 cut(s)	542
NruI	TCGCGA	1 cut(s)	522
NsiI	ATGCAT	1 cut(s)	258
NspI	RCATGY	1 cut(s)	256
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	59, 420
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	17, 70
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	7, 168
PspGI	CCWGG	2 cut(s)	7, 168
PspPI	GGNCC	1 cut(s)	631
PstNI	CAGNNNCTG	2 cut(s)	398, 613
PsuI	RGATCY	2 cut(s)	172, 263
RruI	TCGCGA	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	288, 329, 339
SatI	GCNGC	2 cut(s)	16, 69
Sau3AI	GATC	3 cut(s)	172, 263, 561
Sau96I	GGNCC	1 cut(s)	631
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	9, 170
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	3 cut(s)	192, 449, 504
SsiI	CCGC	3 cut(s)	16, 477, 629
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	7, 168
TaaI	ACNGT	4 cut(s)	101, 344, 461, 548
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	1 cut(s)	465
TasI	AATT	3 cut(s)	192, 449, 504
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	59, 420
Tru1I	TTAA	3 cut(s)	288, 329, 339
Tru9I	TTAA	3 cut(s)	288, 329, 339
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	1 cut(s)	412
TspRI	CASTG	1 cut(s)	153
XapI	RAATTY	2 cut(s)	192, 504
XceI	RCATGY	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	1 cut(s)	87
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.