Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Forward (+)

25689360 .. 25691586

Gene Structure 2227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023589

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCAAAGTCAGAGATAGTTGGTGCACTTAATAAGCCTACCCCTGGTTTGGGTGGAAAACATGGTCTGTATTCAACCAATGGTGTGCATGAGTTACTGGAGTGCCCTGTCTGCACAAGTTTGATGTACCCTCCTATTCATCAGTGTCCTAATGGCCACACGTTATGTTCTGACTGCAAGGTAAGGGTGCAGAATTGTTGCCCAACTTGCCGCTATGAGCTTGGAAATATCAGGTGTTTGGCTTTGGAGAAGGTTGCTGAATCATTGGAACTCCCATGCATATACCAGAGTTTAGGCTGTCATGATATTTTCCCATACTATAGCAAGCTGAAGCATGAGCAACATTGTCGATTTCGTCTATACAATTGCCCTTATGCTGGATCTGAGTGCTCTGTTACCGGTGATATCCCAACTCTTGTTAATCATCTTAAGGATGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAACCATAGATATGTTAAATCAAACCCACATGAAGTTGAAAATGCAACTTGGATGCTAACTGTCTTTAATTGTTTTGGAAGACAGTTTTGTTTGCACTTTGAGGCTTTCCAGATGGGAATGGCTCCAGTCTACATGGCTTTTTTACGATTCATGGGCGATGATACTGAGGCGAAGAAATTCAGCTATAGTTTGGAGGTTGGTGGAAATGGTCGTAAGTTAATATGGCAAGGAATTCCCAGGAGTATCCGCGACAGTCATAGAAAAGTTCGTGACAGCCAGGATGGACTCATAATACAGAGAAATATGGCGCTCTACTTTTCTGGTGGGGATAGGCAAGAACTGAAGTTGAGGATTACTGGCCGGATATGGAAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0043170 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902115 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

284

Amino Acids

32.28

Weight (kDa)

8.09

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_RING	PF21362	35 - 70	7.1e-12	E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF	PF21361	84 - 159	6e-30	Sina, zinc finger
Sina_TRAF	PF03145	179 - 276	7.6e-35	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	600
AccII	CGCG	1 cut(s)	720
AciI	CCGC	2 cut(s)	211, 718
AclWI	GGATC	1 cut(s)	388
AcoI	YGGCCR	2 cut(s)	154, 829
AcsI	RAATTY	2 cut(s)	647, 702
AcuI	CTGAAG	2 cut(s)	350, 833
AfaI	GTAC	2 cut(s)	128, 466
AfiI	CCNNNNNNNGG	4 cut(s)	44, 49, 50, 377
AflII	CTTAAG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	159
AgeI	ACCGGT	1 cut(s)	398
AgsI	TTSAA	3 cut(s)	75, 472, 509
AjnI	CCWGG	3 cut(s)	43, 707, 747
AluBI	AGCT	3 cut(s)	220, 328, 654
AluI	AGCT	3 cut(s)	220, 328, 654
Alw21I	GWGCWC	2 cut(s)	28, 392
Alw44I	GTGCAC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	154, 829
ApaLI	GTGCAC	1 cut(s)	24
ApoI	RAATTY	2 cut(s)	647, 702
AsiGI	ACCGGT	1 cut(s)	398
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	781
AsuHPI	GGTGA	1 cut(s)	413
BaeGI	GKGCMC	2 cut(s)	28, 107
BalI	TGGCCA	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	556
Bbv12I	GWGCWC	2 cut(s)	28, 392
BccI	CCATC	3 cut(s)	452, 577, 746
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	3 cut(s)	45, 709, 749
BciVI	GTATCC	1 cut(s)	725
BclI	TGATCA	1 cut(s)	436
BfmI	CTRYAG	2 cut(s)	319, 655
BfoI	RGCGCY	1 cut(s)	782
BfrI	CTTAAG	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	725
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	3 cut(s)	45, 709, 749
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	3 cut(s)	45, 709, 749
BmsI	GCATC	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	556
BpmI	CTGGAG	2 cut(s)	119, 579
BsaJI	CCNNGG	2 cut(s)	43, 707
BsaWI	WCCGGW	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 49, 50, 377
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	3 cut(s)	102, 596, 832
BseBI	CCWGG	3 cut(s)	45, 709, 749
BseDI	CCNNGG	2 cut(s)	43, 707
BseGI	GGATG	3 cut(s)	439, 528, 757
BseLI	CCNNNNNNNGG	4 cut(s)	44, 49, 50, 377
BseMII	CTCAG	2 cut(s)	375, 627
BseNI	ACTGG	3 cut(s)	102, 596, 832
BseSI	GKGCMC	2 cut(s)	28, 107
BsgI	GTGCAG	2 cut(s)	97, 209
Bsh1236I	CGCG	1 cut(s)	720
BshFI	GGCC	2 cut(s)	156, 831
BshTI	ACCGGT	1 cut(s)	398
BsiHKAI	GWGCWC	2 cut(s)	28, 392
BsiSI	CCGG	2 cut(s)	399, 832
BslI	CCNNNNNNNGG	4 cut(s)	44, 49, 50, 377
BsnI	GGCC	2 cut(s)	156, 831
Bsp1286I	GDGCHC	3 cut(s)	28, 107, 392
Bsp143I	GATC	2 cut(s)	380, 436
BspACI	CCGC	2 cut(s)	211, 718
BspANI	GGCC	2 cut(s)	156, 831
BspCNI	CTCAG	2 cut(s)	376, 628
BspFNI	CGCG	1 cut(s)	720
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	594
BspPI	GGATC	1 cut(s)	388
BspTI	CTTAAG	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	398
BsrI	ACTGG	3 cut(s)	102, 596, 832
BssAI	RCCGGY	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	43, 707
BssMI	GATC	2 cut(s)	380, 436
Bst2UI	CCWGG	3 cut(s)	45, 709, 749
Bst4CI	ACNGT	3 cut(s)	532, 555, 725
BstAFI	CTTAAG	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	384, 636
BstF5I	GGATG	3 cut(s)	439, 528, 757
BstFNI	CGCG	1 cut(s)	720
BstH2I	RGCGCY	1 cut(s)	782
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	2 cut(s)	383, 439
BstMBI	GATC	2 cut(s)	380, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 207
BstNI	CCWGG	3 cut(s)	45, 709, 749
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	3 cut(s)	43, 707, 747
BstSFI	CTRYAG	2 cut(s)	319, 655
BstSLI	GKGCMC	2 cut(s)	28, 107
BstUI	CGCG	1 cut(s)	720
BstV2I	GAAGAC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuI	GTATCC	1 cut(s)	725
BsuRI	GGCC	2 cut(s)	156, 831
BtgZI	GCGATG	1 cut(s)	642
BtsCI	GGATG	3 cut(s)	439, 528, 757
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	326
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	781
Cfr10I	RCCGGY	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	127, 465
CspAI	ACCGGT	1 cut(s)	398
CviQI	GTAC	2 cut(s)	127, 465
DdeI	CTNAG	2 cut(s)	384, 636
DpnI	GATC	2 cut(s)	382, 438
DpnII	GATC	2 cut(s)	380, 436
EaeI	YGGCCR	2 cut(s)	154, 829
Eco32I	GATATC	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	350, 833
EcoRI	GAATTC	1 cut(s)	702
EcoRII	CCWGG	3 cut(s)	43, 707, 747
EcoRV	GATATC	1 cut(s)	406
EcoT22I	ATGCAT	2 cut(s)	281, 456
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	3 cut(s)	446, 535, 764
Fsp4HI	GCNGC	1 cut(s)	211
GlaI	GCGC	1 cut(s)	780
GluI	GCNGC	1 cut(s)	211
GsuI	CTGGAG	2 cut(s)	119, 579
HaeII	RGCGCY	1 cut(s)	782
HaeIII	GGCC	2 cut(s)	156, 831
HapII	CCGG	2 cut(s)	399, 832
HhaI	GCGC	1 cut(s)	781
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	260, 618, 756
HpaII	CCGG	2 cut(s)	399, 832
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	4 cut(s)	26, 448, 465, 601
Hpy188I	TCNGA	3 cut(s)	13, 172, 385
Hpy188III	TCNNGA	3 cut(s)	302, 580, 740
Hpy8I	GTNNAC	4 cut(s)	26, 448, 465, 601
HpyAV	CCTTC	2 cut(s)	244, 478
HpyCH4III	ACNGT	3 cut(s)	532, 555, 725
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	9 cut(s)	26, 88, 114, 177, 190, 279, 454, 515, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 207
HpyF3I	CTNAG	2 cut(s)	384, 636
HpySE526I	ACGT	1 cut(s)	161
HspAI	GCGC	1 cut(s)	779
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	380, 436
LmnI	GCTCC	1 cut(s)	598
LweI	GCATC	1 cut(s)	513
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	3 cut(s)	93, 394, 740
MalI	GATC	2 cut(s)	382, 438
MboI	GATC	2 cut(s)	380, 436
MboII	GAAGA	2 cut(s)	561, 655
MfeI	CAATTG	1 cut(s)	364
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	3 cut(s)	28, 107, 392
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	5 cut(s)	193, 364, 538, 647, 702
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	750
MnlI	CCTC	5 cut(s)	141, 565, 631, 658, 813
Mox20I	TGGCCA	1 cut(s)	156
Mph1103I	ATGCAT	2 cut(s)	281, 456
MroXI	GAANNNNTTC	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	6 cut(s)	30, 420, 429, 486, 537, 689
MslI	CAYNNNNRTG	1 cut(s)	480
Msp20I	TGGCCA	1 cut(s)	156
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	2 cut(s)	399, 832
MspR9I	CCNGG	3 cut(s)	45, 709, 749
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	45, 709, 749
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	2 cut(s)	111, 207
NdeII	GATC	2 cut(s)	380, 436
NlaIV	GGNNCC	1 cut(s)	594
NmuCI	GTSAC	1 cut(s)	740
NsiI	ATGCAT	2 cut(s)	281, 456
NspI	RCATGY	1 cut(s)	454
PagI	TCATGA	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	2 cut(s)	260, 618
PinAI	ACCGGT	1 cut(s)	398
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	750
PpsI	GAGTC	1 cut(s)	750
Psp6I	CCWGG	3 cut(s)	43, 707, 747
PspGI	CCWGG	3 cut(s)	43, 707, 747
PspN4I	GGNNCC	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	2 cut(s)	128, 466
RsaNI	GTAC	2 cut(s)	127, 465
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	6 cut(s)	30, 420, 429, 486, 537, 689
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	2 cut(s)	380, 436
SchI	GAGTC	1 cut(s)	750
ScrFI	CCNGG	3 cut(s)	45, 709, 749
SduI	GDGCHC	3 cut(s)	28, 107, 392
SfaNI	GCATC	1 cut(s)	513
SfcI	CTRYAG	2 cut(s)	319, 655
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	5 cut(s)	193, 364, 538, 647, 702
SsiI	CCGC	2 cut(s)	211, 718
StyD4I	CCNGG	3 cut(s)	43, 707, 747
TaaI	ACNGT	3 cut(s)	532, 555, 725
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	349
TasI	AATT	5 cut(s)	193, 364, 538, 647, 702
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	260, 618
Tru1I	TTAA	6 cut(s)	30, 420, 429, 486, 537, 689
Tru9I	TTAA	6 cut(s)	30, 420, 429, 486, 537, 689
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	740
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	3 cut(s)	128, 516, 610
TspRI	CASTG	1 cut(s)	149
Vha464I	CTTAAG	1 cut(s)	428
VneI	GTGCAC	1 cut(s)	24
XapI	RAATTY	2 cut(s)	647, 702
XceI	RCATGY	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	647
Zsp2I	ATGCAT	2 cut(s)	281, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.