Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Forward (+)

2090701 .. 2092798

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGTCCAGTAGTCCATTTTTTGATGACATCCGGACCAAATCTGAGGTTATTGATCCTCCTCAAAGTGAGGACATGCTGGATGTTGGAGAAAGTGTAATTGATGCTACTGTAATGCCCCAAAAACCTAATGTGACGGTTTCTAGCAGTGTTCGCGAGCTGCTGGAGTGCCCTGTGTGCTTAAATGCTATGTACCCCCCAATCCATCAGTGTTCAAATGGTCACACATTATGTTCTGGTTGCAAACCAAGGGTTCACAACCGGTGCCCCACTTGCCGGCATGAGCTTGGTAATATCAGATGTCTTGCGTTGGAGAAGGTGGCTGCTTCTCTGGAACTTCCTTGTAAATACCAGAGTTTTGGTTGCATGGGCATATACCCTTATTACAGCAAGCTAAAGCATGAATCTCAGTGCCTCCATAGACCCTATAACTGCCCCTATGCTGGTTCTGAATGCTCCGTGGTTGGAGATATTCCTCATCTTGTGGCCCATTTAAAAGATGATCACAAAGTCGACATGCACAATGGCAGCACTTTCAACCATCGCTATGTAAAACCAAATCCACAAGAAGTTGAAAACGCCACTTGGATGTTAACGGTTTTTAGTTGCTTCAACCAGTATTTTTGCCTACATTTTGAAGCCTTCCAGCTCGGGATGGCTCCCGTCTACATAGCATTCTTGCGGTTCATGGGAGATGATAACGAGGCAAAGAACTACAGCTACAGTCTAGAAGTAGGTGGGAACGGGAGGAAGATGATTTGGCAGGGGGTGCCGCGTAGCATTAGGGATAGCCATCGCAAGGTTCGTGACAGTTTTGATGGTCTCATTATTCAGCGCAACATGGCTCTCTTCTTCTCAGGGGGAGACCGAAAGGAATTGAAGCTTAGGGTGACCGGAAGGATATGGAAGGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0080148 GO:0140096 GO:1901564 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

306

Amino Acids

34.65

Weight (kDa)

7.54

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	264, 769
AccI	GTMKAC	2 cut(s)	513, 666
AccII	CGCG	2 cut(s)	156, 775
AccIII	TCCGGA	1 cut(s)	33
AciI	CCGC	2 cut(s)	682, 773
AclWI	GGATC	1 cut(s)	50
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	3 cut(s)	276, 443, 799
AgeI	ACCGGT	1 cut(s)	261
AgsI	TTSAA	6 cut(s)	216, 538, 575, 613, 638, 880
AluBI	AGCT	6 cut(s)	160, 286, 394, 649, 720, 883
AluI	AGCT	6 cut(s)	160, 286, 394, 649, 720, 883
Alw26I	GTCTC	2 cut(s)	827, 858
AlwI	GGATC	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	650
Aor13HI	TCCGGA	1 cut(s)	33
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	3 cut(s)	160, 323, 528
AsiGI	ACCGGT	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	837
AspS9I	GGNCC	2 cut(s)	36, 487
AsuHPI	GGTGA	1 cut(s)	901
AvaI	CYCGRG	1 cut(s)	650
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	2 cut(s)	173, 269
BanI	GGYRCC	2 cut(s)	264, 769
BbvI	GCAGC	3 cut(s)	147, 310, 540
BccI	CCATC	5 cut(s)	213, 549, 649, 801, 812
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	827, 858
BfaI	CTAG	2 cut(s)	144, 728
BfmI	CTRYAG	2 cut(s)	715, 721
BisI	GCNGC	4 cut(s)	161, 324, 529, 773
BlsI	GCNGC	4 cut(s)	162, 325, 530, 774
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	650
BmgT120I	GGNCC	2 cut(s)	36, 487
BmiI	GGNNCC	3 cut(s)	266, 660, 771
BmsI	GCATC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	884
BsaBI	GATNNNNATC	1 cut(s)	792
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	827, 858
BsaJI	CCNNGG	2 cut(s)	248, 459
BsaWI	WCCGGW	3 cut(s)	33, 261, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 443, 799
Bse118I	RCCGGY	2 cut(s)	261, 276
Bse1I	ACTGG	2 cut(s)	9, 616
Bse8I	GATNNNNATC	1 cut(s)	792
BseAI	TCCGGA	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	248, 459
BseGI	GGATG	4 cut(s)	30, 88, 594, 660
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	3 cut(s)	276, 443, 799
BseMII	CTCAG	3 cut(s)	36, 422, 870
BseNI	ACTGG	2 cut(s)	9, 616
BseRI	GAGGAG	1 cut(s)	51
BseSI	GKGCMC	2 cut(s)	173, 269
BseXI	GCAGC	3 cut(s)	147, 310, 540
Bsh1236I	CGCG	2 cut(s)	156, 775
BshFI	GGCC	1 cut(s)	488
BshNI	GGYRCC	2 cut(s)	264, 769
BshTI	ACCGGT	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	4 cut(s)	34, 262, 277, 894
BslI	CCNNNNNNNGG	3 cut(s)	276, 443, 799
BsmAI	GTCTC	2 cut(s)	827, 858
BsmI	GAATGC	2 cut(s)	458, 674
BsnI	GGCC	1 cut(s)	488
Bso31I	GGTCTC	2 cut(s)	827, 858
BsoBI	CYCGRG	1 cut(s)	650
Bsp1286I	GDGCHC	2 cut(s)	173, 269
Bsp13I	TCCGGA	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	55, 502
Bsp68I	TCGCGA	1 cut(s)	156
BspACI	CCGC	2 cut(s)	682, 773
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	3 cut(s)	37, 421, 869
BspEI	TCCGGA	1 cut(s)	33
BspFNI	CGCG	2 cut(s)	156, 775
BspLI	GGNNCC	3 cut(s)	266, 660, 771
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	2 cut(s)	264, 769
BspTNI	GGTCTC	2 cut(s)	827, 858
BsrFI	RCCGGY	2 cut(s)	261, 276
BsrI	ACTGG	2 cut(s)	9, 616
BssAI	RCCGGY	2 cut(s)	261, 276
BssECI	CCNNGG	2 cut(s)	248, 459
BssMI	GATC	2 cut(s)	55, 502
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	248
Bst4CI	ACNGT	6 cut(s)	112, 139, 598, 725, 812, 915
Bst6I	CTCTTC	1 cut(s)	854
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	769
BstC8I	GCNNGC	3 cut(s)	158, 278, 392
BstDEI	CTNAG	4 cut(s)	45, 408, 856, 884
BstDSI	CCRYGG	1 cut(s)	459
BstEII	GGTNACC	1 cut(s)	889
BstF5I	GGATG	4 cut(s)	30, 88, 594, 660
BstFNI	CGCG	2 cut(s)	156, 775
BstHHI	GCGC	1 cut(s)	837
BstKTI	GATC	2 cut(s)	58, 505
BstMAI	GTCTC	2 cut(s)	827, 858
BstMBI	GATC	2 cut(s)	55, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 177, 273, 769
BstNSI	RCATGY	2 cut(s)	79, 520
BstPI	GGTNACC	1 cut(s)	889
BstSFI	CTRYAG	2 cut(s)	715, 721
BstSLI	GKGCMC	2 cut(s)	173, 269
BstUI	CGCG	2 cut(s)	156, 775
BstV1I	GCAGC	3 cut(s)	147, 310, 540
BstXI	CCANNNNNNTGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	459
BtgZI	GCGATG	2 cut(s)	527, 779
BtsCI	GGATG	4 cut(s)	30, 88, 594, 660
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	3 cut(s)	154, 215, 416
BtuMI	TCGCGA	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	158, 278, 392
CfoI	GCGC	1 cut(s)	837
Cfr10I	RCCGGY	2 cut(s)	261, 276
Cfr13I	GGNCC	2 cut(s)	36, 487
Csp6I	GTAC	1 cut(s)	193
CspAI	ACCGGT	1 cut(s)	261
CviAII	CATG	7 cut(s)	76, 281, 367, 401, 517, 688, 841
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	4 cut(s)	45, 408, 856, 884
DpnI	GATC	2 cut(s)	57, 504
DpnII	GATC	2 cut(s)	55, 502
DraI	TTTAAA	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
Eco130I	CCWWGG	1 cut(s)	248
Eco31I	GGTCTC	2 cut(s)	827, 858
Eco47I	GGWCC	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	650
Eco91I	GGTNACC	1 cut(s)	889
EcoO65I	GGTNACC	1 cut(s)	889
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	7 cut(s)	79, 284, 370, 404, 520, 691, 844
FatI	CATG	7 cut(s)	75, 280, 366, 400, 516, 687, 840
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	2 cut(s)	513, 666
Fnu4HI	GCNGC	4 cut(s)	161, 324, 529, 773
FokI	GGATG	4 cut(s)	17, 95, 601, 667
Fsp4HI	GCNGC	4 cut(s)	161, 324, 529, 773
FspBI	CTAG	2 cut(s)	144, 728
GlaI	GCGC	1 cut(s)	836
GluI	GCNGC	4 cut(s)	161, 324, 529, 773
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	4 cut(s)	34, 262, 277, 894
HhaI	GCGC	1 cut(s)	837
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	79, 284, 370, 404, 520, 691, 844
Hin6I	GCGC	1 cut(s)	835
HinP1I	GCGC	1 cut(s)	835
HincII	GTYRAC	2 cut(s)	514, 594
HindII	GTYRAC	2 cut(s)	514, 594
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	1 cut(s)	404
HpaI	GTTAAC	1 cut(s)	594
HpaII	CCGG	4 cut(s)	34, 262, 277, 894
HphI	GGTGA	1 cut(s)	901
Hpy166II	GTNNAC	4 cut(s)	256, 514, 594, 667
Hpy188I	TCNGA	3 cut(s)	46, 299, 451
Hpy188III	TCNNGA	6 cut(s)	34, 155, 332, 652, 728, 806
Hpy8I	GTNNAC	4 cut(s)	256, 514, 594, 667
HpyAV	CCTTC	4 cut(s)	310, 652, 891, 901
HpyCH4III	ACNGT	6 cut(s)	112, 139, 598, 725, 812, 915
HpyCH4V	TGCA	3 cut(s)	243, 366, 520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 177, 273, 769
HpyF3I	CTNAG	4 cut(s)	45, 408, 856, 884
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	79, 284, 370, 404, 520, 691, 844
HspAI	GCGC	1 cut(s)	835
Kpn2I	TCCGGA	1 cut(s)	33
KroI	GCCGGC	1 cut(s)	276
KroNI	GCCGGC	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	502
KspAI	GTTAAC	1 cut(s)	594
Kzo9I	GATC	2 cut(s)	55, 502
LmnI	GCTCC	2 cut(s)	461, 664
Lsp1109I	GCAGC	3 cut(s)	147, 310, 540
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	144, 728
MaeIII	GTNAC	4 cut(s)	133, 221, 806, 889
MalI	GATC	2 cut(s)	57, 504
MboI	GATC	2 cut(s)	55, 502
MboII	GAAGA	3 cut(s)	763, 841, 844
MhlI	GDGCHC	2 cut(s)	173, 269
MluCI	AATT	2 cut(s)	99, 875
MmeI	TCCRAC	3 cut(s)	67, 291, 445
MnlI	CCTC	8 cut(s)	40, 64, 69, 72, 425, 486, 697, 741
MroI	TCCGGA	1 cut(s)	33
MroNI	GCCGGC	1 cut(s)	276
MseI	TTAA	3 cut(s)	182, 494, 593
MslI	CAYNNNNRTG	2 cut(s)	546, 587
MspI	CCGG	4 cut(s)	34, 262, 277, 894
Mva1269I	GAATGC	2 cut(s)	458, 674
MvnI	CGCG	2 cut(s)	156, 775
MwoI	GCNNNNNNNGC	4 cut(s)	153, 177, 273, 769
NaeI	GCCGGC	1 cut(s)	278
NdeII	GATC	2 cut(s)	55, 502
NgoMIV	GCCGGC	1 cut(s)	276
NlaIII	CATG	7 cut(s)	79, 284, 370, 404, 520, 691, 844
NlaIV	GGNNCC	3 cut(s)	266, 660, 771
NmuCI	GTSAC	4 cut(s)	133, 221, 806, 889
NruI	TCGCGA	1 cut(s)	156
NspI	RCATGY	2 cut(s)	79, 520
PcsI	WCGNNNNNNNCGW	1 cut(s)	802
PctI	GAATGC	2 cut(s)	458, 674
PdiI	GCCGGC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	404
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	4 cut(s)	162, 325, 530, 774
PspEI	GGTNACC	1 cut(s)	889
PspN4I	GGNNCC	3 cut(s)	266, 660, 771
PspPI	GGNCC	2 cut(s)	36, 487
PsrI	GAACNNNNNNTAC	2 cut(s)	704, 736
RruI	TCGCGA	1 cut(s)	156
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	546, 587
SalI	GTCGAC	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	182, 494, 593
SatI	GCNGC	4 cut(s)	161, 324, 529, 773
Sau3AI	GATC	2 cut(s)	55, 502
Sau96I	GGNCC	2 cut(s)	36, 487
SduI	GDGCHC	2 cut(s)	173, 269
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	2 cut(s)	715, 721
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	2 cut(s)	546, 587
Sse9I	AATT	2 cut(s)	99, 875
SsiI	CCGC	2 cut(s)	682, 773
SspMI	CTAG	2 cut(s)	144, 728
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	6 cut(s)	112, 139, 598, 725, 812, 915
TaqI	TCGA	1 cut(s)	513
TaqII	GACCGA	1 cut(s)	882
TasI	AATT	2 cut(s)	99, 875
TauI	GCSGC	1 cut(s)	775
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	3 cut(s)	182, 494, 593
Tru9I	TTAA	3 cut(s)	182, 494, 593
TscAI	CASTG	3 cut(s)	154, 215, 416
TseFI	GTSAC	4 cut(s)	133, 221, 806, 889
TseI	GCWGC	3 cut(s)	160, 323, 528
Tsp45I	GTSAC	4 cut(s)	133, 221, 806, 889
TspDTI	ATGAA	2 cut(s)	417, 676
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	3 cut(s)	154, 215, 416
VpaK11BI	GGWCC	1 cut(s)	36
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	2 cut(s)	79, 520
XmiI	GTMKAC	2 cut(s)	513, 666
XspI	CTAG	2 cut(s)	144, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.