E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 143, 176, 449 |
| AcuI | CTGAAG | 1 cut(s) | 401 |
| AflIII | ACRYGT | 1 cut(s) | 84 |
| AgsI | TTSAA | 3 cut(s) | 56, 404, 412 |
| AluBI | AGCT | 2 cut(s) | 35, 458 |
| AluI | AGCT | 2 cut(s) | 35, 458 |
| Alw21I | GWGCWC | 1 cut(s) | 256 |
| Alw26I | GTCTC | 1 cut(s) | 93 |
| ApoI | RAATTY | 3 cut(s) | 143, 176, 449 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 338 |
| BauI | CACGAG | 1 cut(s) | 198 |
| Bbv12I | GWGCWC | 1 cut(s) | 256 |
| BceAI | ACGGC | 1 cut(s) | 147 |
| BcoDI | GTCTC | 1 cut(s) | 93 |
| BfaI | CTAG | 1 cut(s) | 66 |
| BglII | AGATCT | 1 cut(s) | 368 |
| BmsI | GCATC | 1 cut(s) | 409 |
| BpuEI | CTTGAG | 1 cut(s) | 213 |
| BsaJI | CCNNGG | 1 cut(s) | 95 |
| Bse1I | ACTGG | 1 cut(s) | 264 |
| BseDI | CCNNGG | 1 cut(s) | 95 |
| BseGI | GGATG | 1 cut(s) | 424 |
| BseMII | CTCAG | 1 cut(s) | 363 |
| BseNI | ACTGG | 1 cut(s) | 264 |
| BsiHKAI | GWGCWC | 1 cut(s) | 256 |
| BsmAI | GTCTC | 1 cut(s) | 93 |
| BsmI | GAATGC | 3 cut(s) | 134, 298, 435 |
| Bsp1286I | GDGCHC | 1 cut(s) | 256 |
| Bsp143I | GATC | 2 cut(s) | 279, 368 |
| BspCNI | CTCAG | 1 cut(s) | 364 |
| BsrI | ACTGG | 1 cut(s) | 264 |
| BssECI | CCNNGG | 1 cut(s) | 95 |
| BssMI | GATC | 2 cut(s) | 279, 368 |
| BssSI | CACGAG | 1 cut(s) | 198 |
| BssT1I | CCWWGG | 1 cut(s) | 95 |
| Bst2BI | CACGAG | 1 cut(s) | 198 |
| Bst4CI | ACNGT | 1 cut(s) | 187 |
| Bst6I | CTCTTC | 1 cut(s) | 96 |
| BstC8I | GCNNGC | 1 cut(s) | 390 |
| BstDEI | CTNAG | 2 cut(s) | 45, 372 |
| BstF5I | GGATG | 1 cut(s) | 424 |
| BstKTI | GATC | 2 cut(s) | 282, 371 |
| BstMAI | GTCTC | 1 cut(s) | 93 |
| BstMBI | GATC | 2 cut(s) | 279, 368 |
| BstNSI | RCATGY | 2 cut(s) | 88, 392 |
| BstX2I | RGATCY | 1 cut(s) | 368 |
| BstYI | RGATCY | 1 cut(s) | 368 |
| BtsCI | GGATG | 1 cut(s) | 424 |
| BtsIMutI | CAGTG | 2 cut(s) | 192, 271 |
| Cac8I | GCNNGC | 1 cut(s) | 390 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 308, 343 |
| CviAII | CATG | 3 cut(s) | 85, 350, 389 |
| CviJI | RGCY | 4 cut(s) | 35, 156, 211, 458 |
| CviKI_1 | RGCY | 4 cut(s) | 35, 156, 211, 458 |
| DdeI | CTNAG | 2 cut(s) | 45, 372 |
| DpnI | GATC | 2 cut(s) | 281, 370 |
| DpnII | GATC | 2 cut(s) | 279, 368 |
| DraI | TTTAAA | 1 cut(s) | 142 |
| Eam1104I | CTCTTC | 1 cut(s) | 96 |
| EarI | CTCTTC | 1 cut(s) | 96 |
| Eco130I | CCWWGG | 1 cut(s) | 95 |
| Eco57I | CTGAAG | 1 cut(s) | 401 |
| EcoT14I | CCWWGG | 1 cut(s) | 95 |
| ErhI | CCWWGG | 1 cut(s) | 95 |
| FaeI | CATG | 3 cut(s) | 88, 353, 392 |
| FaiI | YATR | 8 cut(s) | 86, 111, 113, 128, 153, 344, 351, 390 |
| FatI | CATG | 3 cut(s) | 84, 349, 388 |
| FokI | GGATG | 1 cut(s) | 431 |
| FspBI | CTAG | 1 cut(s) | 66 |
| Hin1II | CATG | 3 cut(s) | 88, 353, 392 |
| HinfI | GANTC | 1 cut(s) | 29 |
| Hpy188I | TCNGA | 1 cut(s) | 373 |
| HpyAV | CCTTC | 2 cut(s) | 376, 406 |
| HpyCH4III | ACNGT | 1 cut(s) | 187 |
| HpyCH4V | TGCA | 3 cut(s) | 310, 433, 446 |
| HpyF3I | CTNAG | 2 cut(s) | 45, 372 |
| Hsp92II | CATG | 3 cut(s) | 88, 353, 392 |
| Kzo9I | GATC | 2 cut(s) | 279, 368 |
| LmnI | GCTCC | 1 cut(s) | 385 |
| LpnPI | CCDG | 1 cut(s) | 277 |
| LweI | GCATC | 1 cut(s) | 409 |
| MaeI | CTAG | 1 cut(s) | 66 |
| MaeIII | GTNAC | 1 cut(s) | 40 |
| MalI | GATC | 2 cut(s) | 281, 370 |
| MboI | GATC | 2 cut(s) | 279, 368 |
| MboII | GAAGA | 4 cut(s) | 83, 281, 365, 416 |
| MflI | RGATCY | 1 cut(s) | 368 |
| MhlI | GDGCHC | 1 cut(s) | 256 |
| MluCI | AATT | 6 cut(s) | 143, 176, 272, 407, 437, 449 |
| MnlI | CCTC | 2 cut(s) | 367, 409 |
| MroXI | GAANNNNTTC | 1 cut(s) | 338 |
| MseI | TTAA | 5 cut(s) | 81, 102, 141, 222, 460 |
| MslI | CAYNNNNRTG | 3 cut(s) | 83, 321, 354 |
| MspA1I | CMGCKG | 1 cut(s) | 35 |
| Mva1269I | GAATGC | 3 cut(s) | 134, 298, 435 |
| NdeII | GATC | 2 cut(s) | 279, 368 |
| NlaIII | CATG | 3 cut(s) | 88, 353, 392 |
| NmuCI | GTSAC | 1 cut(s) | 40 |
| NspI | RCATGY | 2 cut(s) | 88, 392 |
| PaeI | GCATGC | 1 cut(s) | 392 |
| PciI | ACATGT | 1 cut(s) | 84 |
| PctI | GAATGC | 3 cut(s) | 134, 298, 435 |
| PdmI | GAANNNNTTC | 1 cut(s) | 338 |
| PfeI | GAWTC | 1 cut(s) | 29 |
| PscI | ACATGT | 1 cut(s) | 84 |
| PsuI | RGATCY | 1 cut(s) | 368 |
| PvuII | CAGCTG | 1 cut(s) | 35 |
| RseI | CAYNNNNRTG | 3 cut(s) | 83, 321, 354 |
| SaqAI | TTAA | 5 cut(s) | 81, 102, 141, 222, 460 |
| Sau3AI | GATC | 2 cut(s) | 279, 368 |
| SduI | GDGCHC | 1 cut(s) | 256 |
| SetI | ASST | 2 cut(s) | 37, 460 |
| SfaNI | GCATC | 1 cut(s) | 409 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 83, 321, 354 |
| SmlI | CTYRAG | 1 cut(s) | 228 |
| SmoI | CTYRAG | 1 cut(s) | 228 |
| SphI | GCATGC | 1 cut(s) | 392 |
| Sse9I | AATT | 6 cut(s) | 143, 176, 272, 407, 437, 449 |
| SspI | AATATT | 1 cut(s) | 399 |
| SspMI | CTAG | 1 cut(s) | 66 |
| StyI | CCWWGG | 1 cut(s) | 95 |
| TaaI | ACNGT | 1 cut(s) | 187 |
| TaqI | TCGA | 3 cut(s) | 27, 75, 332 |
| TasI | AATT | 6 cut(s) | 143, 176, 272, 407, 437, 449 |
| TfiI | GAWTC | 1 cut(s) | 29 |
| Tru1I | TTAA | 5 cut(s) | 81, 102, 141, 222, 460 |
| Tru9I | TTAA | 5 cut(s) | 81, 102, 141, 222, 460 |
| TscAI | CASTG | 2 cut(s) | 192, 271 |
| TseFI | GTSAC | 1 cut(s) | 40 |
| Tsp45I | GTSAC | 1 cut(s) | 40 |
| TspDTI | ATGAA | 4 cut(s) | 17, 207, 331, 366 |
| TspGWI | ACGGA | 1 cut(s) | 137 |
| TspRI | CASTG | 2 cut(s) | 192, 271 |
| XapI | RAATTY | 3 cut(s) | 143, 176, 449 |
| XceI | RCATGY | 2 cut(s) | 88, 392 |
| XmnI | GAANNNNTTC | 1 cut(s) | 338 |
| XspI | CTAG | 1 cut(s) | 66 |