Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036084.1

Orthogroup ID

OG0001082

Physical Location & Seq

Genomic Coordinates Forward (+)

7938 .. 8767

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036084.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggccacacattatgttctgactgcaagcaagctgaagcacgagcaacattgtcgatttcgtctatacaattgcccttatgctggatctgagtgctctgttacaggcgatatcccaactcttgttaatcatcttaaggatgatcacaaggttgacatgcatgatgggtgtaccttcaaccatagatatgttaaatcaaacccacatgaagttgaaaatgcaacttggatgctaactgtctttaattgttttggaagacagttttgtttgcactttgaggctttccagatgggaatggctccagtctacatggcttttttacgattcatgggcgatgatactgaggcaaagaaattcagctatagtttggaggttggtggaaatggtcgtaagttaatatggcaaggaattcccaggagtatccgtgacagtcatagaaaagttcgtgacagccaggatggactcataatacagagaaatatggcgctctacttttctggtggggataggcaagaactgaagttgaggattaccggccggatatggaaagaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009894 GO:0009987 GO:0010506 GO:0016241 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0031323 GO:0031329 GO:0032446 GO:0033043 GO:0036211 GO:0043170 GO:0043412 GO:0044087 GO:0044088 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051128 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902115 GO:2000785

KEGG Pathways

Metabolic & Signaling

ko04013 ko04115 ko04120 ko04310 map04013 map04115 map04120 map04310

Pfam Domains

Protein Families

Sina

Protein Analysis

185

Amino Acids

21.53

Weight (kDa)

8.73

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41980 AT3G58040 AT3G58040
fragaria_vesca	FvH4_3g44521 FvH4_6g21930
malus_domestica	MD02G1290000.v1.1 MD03G1012000.v1.1 MD07G1037000.v1.1 MD11G1014900.v1.1 MD12G1055100.v1.1 MD14G1054300.v1.1
prunus_persica	Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.2G032500_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.6G012400_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1 Prupe.7G080800_v2.0.a1
pyrus_communis	pycom02g24550 pycom03g01070 pycom07g02580 pycom12g04810 pycom14g04480
rosa_chinensis	RchiOBHm_Chr1g0325251 RchiOBHm_Chr3g0479261 RchiOBHm_Chr5g0081221
rosa_laevigata	RLG00000023589 RLG00000036920
rosa_multiflora	Rmu_sc0002978.1_g000005 Rmu_sc0007768.1_g000002 Rmu_sc0036084.1_g000002 Rmu_ssc0000432.1_g000070
rosa_roxburghii	Rroxscaffold_1G00002250 Rroxscaffold_6G00402480
rosa_rugosa	Rorug03G0173400 Rorug03G0173500 Rorug03G0173600 Rorug05G0474800 Rorug05G0475000 Rorug05G0475000
rosa_samantha	Rh3AG224400 Rh3AG224900 Rh3BG257400 Rh3DG249200 Rh5AG526600 Rh5BG550800 Rh5CG573700 Rh5DG560900
rosa_wichuraiana	Rw3G020110 Rw5G048950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	2 cut(s)	3, 535
AcsI	RAATTY	2 cut(s)	353, 408
AcuI	CTGAAG	2 cut(s)	56, 539
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	178, 215
AjnI	CCWGG	2 cut(s)	413, 453
AluBI	AGCT	2 cut(s)	34, 360
AluI	AGCT	2 cut(s)	34, 360
Alw21I	GWGCWC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	2 cut(s)	3, 535
ApoI	RAATTY	2 cut(s)	353, 408
AspLEI	GCGC	1 cut(s)	487
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	98
BccI	CCATC	3 cut(s)	158, 283, 452
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	2 cut(s)	415, 455
BciVI	GTATCC	1 cut(s)	431
BclI	TGATCA	1 cut(s)	142
BfmI	CTRYAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	488
BfrI	CTTAAG	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	431
Bme1390I	CCNGG	2 cut(s)	415, 455
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	415, 455
BmsI	GCATC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	302
BseBI	CCWGG	2 cut(s)	415, 455
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	3 cut(s)	145, 234, 463
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	81, 333
BseNI	ACTGG	1 cut(s)	302
BseX3I	CGGCCG	1 cut(s)	535
Bsh1285I	CGRYCG	1 cut(s)	538
BshFI	GGCC	2 cut(s)	5, 537
BsiEI	CGRYCG	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	534, 538
BslI	CCNNNNNNNGG	1 cut(s)	83
BsnI	GGCC	2 cut(s)	5, 537
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	86, 142
BspANI	GGCC	2 cut(s)	5, 537
BspCNI	CTCAG	2 cut(s)	82, 334
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	94
BspTI	CTTAAG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	2 cut(s)	86, 142
BssSI	CACGAG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	2 cut(s)	415, 455
Bst4CI	ACNGT	3 cut(s)	238, 261, 431
BstAFI	CTTAAG	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	28, 32
BstDEI	CTNAG	2 cut(s)	90, 342
BstF5I	GGATG	3 cut(s)	145, 234, 463
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	2 cut(s)	89, 145
BstMBI	GATC	2 cut(s)	86, 142
BstMCI	CGRYCG	1 cut(s)	538
BstNI	CCWGG	2 cut(s)	415, 455
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	413, 453
BstSFI	CTRYAG	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BstZI	CGGCCG	1 cut(s)	535
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	5, 537
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	145, 234, 463
Cac8I	GCNNGC	2 cut(s)	28, 32
CfoI	GCGC	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	5 cut(s)	157, 161, 206, 310, 328
CviJI	RGCY	8 cut(s)	5, 34, 281, 299, 314, 360, 453, 537
CviKI_1	RGCY	8 cut(s)	5, 34, 281, 299, 314, 360, 453, 537
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	2 cut(s)	90, 342
DpnI	GATC	2 cut(s)	88, 144
DpnII	GATC	2 cut(s)	86, 142
EaeI	YGGCCR	2 cut(s)	3, 535
EagI	CGGCCG	1 cut(s)	535
EclXI	CGGCCG	1 cut(s)	535
Eco32I	GATATC	1 cut(s)	112
Eco52I	CGGCCG	1 cut(s)	535
Eco57I	CTGAAG	2 cut(s)	56, 539
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	413, 453
EcoRV	GATATC	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	162
FaeI	CATG	5 cut(s)	160, 164, 209, 313, 331
FatI	CATG	5 cut(s)	156, 160, 205, 309, 327
FbaI	TGATCA	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	306
FokI	GGATG	3 cut(s)	152, 241, 470
GlaI	GCGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	285
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	5, 537
HapII	CCGG	2 cut(s)	534, 538
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	5 cut(s)	160, 164, 209, 313, 331
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	324, 462
HpaII	CCGG	2 cut(s)	534, 538
Hpy166II	GTNNAC	3 cut(s)	154, 171, 307
Hpy188I	TCNGA	2 cut(s)	21, 91
Hpy188III	TCNNGA	2 cut(s)	286, 446
Hpy8I	GTNNAC	3 cut(s)	154, 171, 307
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	3 cut(s)	238, 261, 431
HpyCH4V	TGCA	4 cut(s)	26, 160, 221, 271
HpyF3I	CTNAG	2 cut(s)	90, 342
Hsp92II	CATG	5 cut(s)	160, 164, 209, 313, 331
HspAI	GCGC	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	86, 142
LmnI	GCTCC	1 cut(s)	304
LweI	GCATC	1 cut(s)	219
MaeIII	GTNAC	3 cut(s)	100, 425, 446
MalI	GATC	2 cut(s)	88, 144
MboI	GATC	2 cut(s)	86, 142
MboII	GAAGA	1 cut(s)	267
MfeI	CAATTG	1 cut(s)	70
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	98
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	70, 244, 353, 408
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	456
MnlI	CCTC	4 cut(s)	271, 337, 364, 519
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	126, 135, 192, 243, 395
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	2 cut(s)	534, 538
MspR9I	CCNGG	2 cut(s)	415, 455
MunI	CAATTG	1 cut(s)	70
MvaI	CCWGG	2 cut(s)	415, 455
NdeII	GATC	2 cut(s)	86, 142
NlaIII	CATG	5 cut(s)	160, 164, 209, 313, 331
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	2 cut(s)	425, 446
NsiI	ATGCAT	1 cut(s)	162
NspI	RCATGY	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	324
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	413, 453
PspGI	CCWGG	2 cut(s)	413, 453
PspN4I	GGNNCC	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	5 cut(s)	126, 135, 192, 243, 395
Sau3AI	GATC	2 cut(s)	86, 142
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	415, 455
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	5 cut(s)	36, 153, 176, 362, 375
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	70, 244, 353, 408
StyD4I	CCNGG	2 cut(s)	413, 453
TaaI	ACNGT	3 cut(s)	238, 261, 431
TaqI	TCGA	1 cut(s)	55
TasI	AATT	4 cut(s)	70, 244, 353, 408
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	5 cut(s)	126, 135, 192, 243, 395
Tru9I	TTAA	5 cut(s)	126, 135, 192, 243, 395
TseFI	GTSAC	2 cut(s)	425, 446
Tsp45I	GTSAC	2 cut(s)	425, 446
TspDTI	ATGAA	2 cut(s)	222, 316
TspGWI	ACGGA	1 cut(s)	413
Vha464I	CTTAAG	1 cut(s)	134
XapI	RAATTY	2 cut(s)	353, 408
XceI	RCATGY	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.